Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013148

Physical Location & Seq

Genomic Coordinates Reverse (-)

25046607 .. 25048388

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1127100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTTCTTTCTCGATGATATCGGCGTCATCCCACCTCTACATTCCAAAGAAGCTAGCTTTTCCAATCCGGTGCTCCTCCGCTTCATCGTCGCCGTCCATTTCAGCCCAATCGAGCTCCCTCAAGTTCGATTTGAAAACCTACTGGACTACCCTGATCGCCGACATGAATCAGAAGCTTCACGAAGCCATTCCGATTCGGTACCCAGAGCAGATCTATCAATCCATGCGATACTCCGTCCTCGCTGATGGCGCCAAGCGAGCCTCACCGGTCATGTGCGTCGCAGCCTGTGAACTCTTCGGCGGCAACCGCCTTGCCGCCTTCCCCACCGCCTGCGCTCTCGAAATGGTACATGCGGCTTCACTCATACACGACGATCTTCCGTGCATGGATGACGACCCATCACGGAGAGGCCAGCCCTCGAACCACACAATTTACGGCGATGACATGGCTATTCTCGCCGGGGATGCTCTGTTTCCATTGGGGTTTCAGCACATTGTATCAAACACGCCTTCCAATCTCGTGCCGGAGCCGCGCCTCCTGCGTGTGATCACAGAGATTGCTCAGACCGTGGGTTCCACGGGAATGGCGGCCGGGCAGTTCCTGGACCTTGAAGGCGGGCCAGAGGCGGTGGAATTCGCCCAGGAGAAGAAGTTTGGGGAGATGAGTCAGTGCTCTGCTGTTTGCGGAGGACTGCTGGGGGGTGCTGAAGATGATGAGTTGGATAGGCTGAGGAGGTATGGGAGAGCTGTCGGGGTTTTGTACCGGGTGGTTGACGATATTCTCGAGGAGAAGATGAAGGGCGGAGATGATGGTGATAGAGAGGGGAAGAAGAAGGGGTTCAGCTATGTGAAAATGTATGGGGTGGAGAAGGCTATGGAGGTGGCAGAGCAGCTTAAAACCAAAGCTAAGCAGGAGTTGGATGGGTTTGAGAAGTATGGTGATGGAGTGGTGCCACTCTATAGCTTTGTGGATTATGCTGTTGACAGAGGGTTTAGTGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034357 GO:0042214 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

336

Amino Acids

36.49

Weight (kDa)

5.19

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	71 - 265	1.1e-31	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38460
fragaria_vesca	FvH4_2g15810
malus_domestica	MD05G1127100.v1.1 MD12G1092700.v1.1
prunus_persica	Prupe.8G170800_v2.0.a1
pyrus_communis	pycom05g12290 pycom10g11180
rosa_chinensis	RchiOBHm_Chr6g0279181
rosa_laevigata	RLG00000013157
rosa_multiflora	Rmu_sc0014203.1_g000011 Rmu_sc0014536.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189050
rosa_rugosa	Rorug06G0123500
rosa_samantha	Rh6AG231800 Rh6BG236700 Rh6CG238600 Rh6DG230200
rosa_wichuraiana	Rw6G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	3 cut(s)	201, 251, 952
AccII	CGCG	1 cut(s)	535
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	729
AcyI	GRCGYC	2 cut(s)	26, 252
AfaI	GTAC	3 cut(s)	203, 351, 764
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	136, 614
AjnI	CCWGG	2 cut(s)	603, 642
AluBI	AGCT	9 cut(s)	55, 59, 117, 178, 749, 846, 895, 908, 966
AluI	AGCT	9 cut(s)	55, 59, 117, 178, 749, 846, 895, 908, 966
Alw21I	GWGCWC	3 cut(s)	77, 119, 677
AlwNI	CAGNNNCTG	1 cut(s)	604
Ama87I	CYCGRG	1 cut(s)	785
AoxI	GGCC	3 cut(s)	412, 591, 620
ApeKI	GCWGC	2 cut(s)	284, 892
ApoI	RAATTY	1 cut(s)	635
AsiGI	ACCGGT	1 cut(s)	268
Asp700I	GAANNNNTTC	2 cut(s)	189, 839
Asp718I	GGTACC	1 cut(s)	201
AspLEI	GCGC	3 cut(s)	254, 338, 537
AspS9I	GGNCC	2 cut(s)	607, 620
AsuC2I	CCSGG	3 cut(s)	463, 595, 767
AsuHPI	GGTGA	3 cut(s)	258, 827, 953
AsuNHI	GCTAGC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	785
AvaII	GGWCC	1 cut(s)	607
BanI	GGYRCC	3 cut(s)	201, 251, 952
BanII	GRGCYC	1 cut(s)	119
BauI	CACGAG	1 cut(s)	521
Bbv12I	GWGCWC	3 cut(s)	77, 119, 677
BbvCI	CCTCAGC	1 cut(s)	731
BbvI	GCAGC	2 cut(s)	296, 904
BccI	CCATC	5 cut(s)	242, 409, 806, 917, 938
BceAI	ACGGC	2 cut(s)	79, 454
BciT130I	CCWGG	2 cut(s)	605, 644
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	3 cut(s)	463, 595, 767
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	961
BfoI	RGCGCY	1 cut(s)	255
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	7 cut(s)	285, 304, 318, 357, 533, 591, 893
BlpI	GCTNAGC	1 cut(s)	909
BlsI	GCNGC	7 cut(s)	286, 305, 319, 358, 534, 592, 894
Bme1390I	CCNGG	5 cut(s)	463, 595, 605, 644, 767
Bme18I	GGWCC	1 cut(s)	607
BmeT110I	CYCGRG	1 cut(s)	785
BmgT120I	GGNCC	2 cut(s)	607, 620
BmiI	GGNNCC	5 cut(s)	203, 253, 531, 577, 954
BmrFI	CCNGG	5 cut(s)	463, 595, 605, 644, 767
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	731
Bpu1102I	GCTNAGC	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	3 cut(s)	463, 595, 767
BsaHI	GRCGYC	2 cut(s)	26, 252
BsaJI	CCNNGG	4 cut(s)	462, 570, 579, 642
BsaWI	WCCGGW	2 cut(s)	69, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	2 cut(s)	605, 644
BseDI	CCNNGG	4 cut(s)	462, 570, 579, 642
BseGI	GGATG	4 cut(s)	29, 397, 472, 928
BseMII	CTCAG	2 cut(s)	578, 722
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	3 cut(s)	67, 748, 803
BseX3I	CGGCCG	1 cut(s)	591
BseXI	GCAGC	2 cut(s)	296, 904
BseYI	CCCAGC	1 cut(s)	697
Bsh1236I	CGCG	1 cut(s)	535
Bsh1285I	CGRYCG	1 cut(s)	594
BshFI	GGCC	3 cut(s)	414, 593, 622
BshNI	GGYRCC	3 cut(s)	201, 251, 952
BshTI	ACCGGT	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	594
BsiHKAI	GWGCWC	3 cut(s)	77, 119, 677
BsiHKCI	CYCGRG	1 cut(s)	785
BsiSI	CCGG	6 cut(s)	70, 269, 462, 527, 594, 766
BsnI	GGCC	3 cut(s)	414, 593, 622
BsoBI	CYCGRG	1 cut(s)	785
Bsp1286I	GDGCHC	3 cut(s)	77, 119, 677
Bsp143I	GATC	4 cut(s)	156, 213, 376, 549
Bsp1720I	GCTNAGC	1 cut(s)	909
BspANI	GGCC	3 cut(s)	414, 593, 622
BspCNI	CTCAG	2 cut(s)	577, 723
BspFNI	CGCG	1 cut(s)	535
BspLI	GGNNCC	5 cut(s)	203, 253, 531, 577, 954
BspOI	GCTAGC	1 cut(s)	59
BspT107I	GGYRCC	3 cut(s)	201, 251, 952
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	4 cut(s)	462, 570, 579, 642
BssMI	GATC	4 cut(s)	156, 213, 376, 549
BssNI	GRCGYC	2 cut(s)	26, 252
BssSI	CACGAG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	605, 644
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	2 cut(s)	26, 252
BstC8I	GCNNGC	5 cut(s)	57, 261, 334, 416, 620
BstDEI	CTNAG	3 cut(s)	564, 731, 909
BstDSI	CCRYGG	2 cut(s)	570, 579
BstF5I	GGATG	4 cut(s)	29, 397, 472, 928
BstFNI	CGCG	1 cut(s)	535
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	3 cut(s)	254, 338, 537
BstKTI	GATC	4 cut(s)	159, 216, 379, 552
BstMBI	GATC	4 cut(s)	156, 213, 376, 549
BstMCI	CGRYCG	1 cut(s)	594
BstMWI	GCNNNNNNNGC	7 cut(s)	251, 260, 309, 458, 467, 532, 541
BstNI	CCWGG	2 cut(s)	605, 644
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	5 cut(s)	461, 593, 603, 642, 765
BstSFI	CTRYAG	1 cut(s)	961
BstUI	CGCG	1 cut(s)	535
BstV1I	GCAGC	2 cut(s)	296, 904
BstX2I	RGATCY	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	213
BstZI	CGGCCG	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	414, 593, 622
BtgI	CCRYGG	2 cut(s)	570, 579
BtgZI	GCGATG	1 cut(s)	456
BtsCI	GGATG	4 cut(s)	29, 397, 472, 928
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	5 cut(s)	57, 261, 334, 416, 620
CaiI	CAGNNNCTG	1 cut(s)	604
CfoI	GCGC	3 cut(s)	254, 338, 537
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	607, 620
CseI	GACGC	2 cut(s)	15, 268
Csp6I	GTAC	3 cut(s)	202, 350, 763
CspAI	ACCGGT	1 cut(s)	268
CviAII	CATG	6 cut(s)	166, 226, 274, 353, 388, 448
CviQI	GTAC	3 cut(s)	202, 350, 763
DdeI	CTNAG	3 cut(s)	564, 731, 909
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	4 cut(s)	158, 215, 378, 551
DpnII	GATC	4 cut(s)	156, 213, 376, 549
EaeI	YGGCCR	1 cut(s)	591
EagI	CGGCCG	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	819
Ecl136II	GAGCTC	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	607
Eco52I	CGGCCG	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	785
EcoICRI	GAGCTC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	603, 642
EcoRV	GATATC	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaeI	CATG	6 cut(s)	169, 229, 277, 356, 391, 451
FatI	CATG	6 cut(s)	165, 225, 273, 352, 387, 447
FauI	CCCGC	1 cut(s)	611
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	7 cut(s)	285, 304, 318, 357, 533, 591, 893
FokI	GGATG	4 cut(s)	16, 404, 479, 935
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	7 cut(s)	285, 304, 318, 357, 533, 591, 893
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	3 cut(s)	253, 337, 536
GluI	GCNGC	7 cut(s)	285, 304, 318, 357, 533, 591, 893
GsaI	CCCAGC	1 cut(s)	701
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	414, 593, 622
HapII	CCGG	6 cut(s)	70, 269, 462, 527, 594, 766
HgaI	GACGC	2 cut(s)	15, 268
HhaI	GCGC	3 cut(s)	254, 338, 537
Hin1I	GRCGYC	2 cut(s)	26, 252
Hin1II	CATG	6 cut(s)	169, 229, 277, 356, 391, 451
Hin6I	GCGC	3 cut(s)	252, 336, 535
HinP1I	GCGC	3 cut(s)	252, 336, 535
HincII	GTYRAC	2 cut(s)	775, 985
HindII	GTYRAC	2 cut(s)	775, 985
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	3 cut(s)	169, 196, 667
HpaII	CCGG	6 cut(s)	70, 269, 462, 527, 594, 766
HphI	GGTGA	3 cut(s)	258, 827, 953
Hpy166II	GTNNAC	3 cut(s)	293, 775, 985
Hpy188I	TCNGA	3 cut(s)	174, 195, 567
Hpy188III	TCNNGA	4 cut(s)	13, 182, 341, 785
Hpy8I	GTNNAC	3 cut(s)	293, 775, 985
Hpy99I	CGWCG	3 cut(s)	94, 284, 377
HpyAV	CCTTC	6 cut(s)	331, 522, 608, 793, 829, 865
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	7 cut(s)	251, 260, 309, 458, 467, 532, 541
HpyF3I	CTNAG	3 cut(s)	564, 731, 909
Hsp92I	GRCGYC	2 cut(s)	26, 252
Hsp92II	CATG	6 cut(s)	169, 229, 277, 356, 391, 451
HspAI	GCGC	3 cut(s)	252, 336, 535
KasI	GGCGCC	1 cut(s)	251
KpnI	GGTACC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	4 cut(s)	156, 213, 376, 549
LmnI	GCTCC	3 cut(s)	80, 122, 529
Lsp1109I	GCAGC	2 cut(s)	296, 904
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	1 cut(s)	56
MalI	GATC	4 cut(s)	158, 215, 378, 551
MboI	GATC	4 cut(s)	156, 213, 376, 549
MboII	GAAGA	7 cut(s)	289, 371, 661, 722, 805, 841, 844
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	77, 119, 677
MluCI	AATT	2 cut(s)	432, 635
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	676
MmeI	TCCRAC	2 cut(s)	702, 900
MroXI	GAANNNNTTC	2 cut(s)	189, 839
MseI	TTAA	1 cut(s)	897
MslI	CAYNNNNRTG	1 cut(s)	584
MspI	CCGG	6 cut(s)	70, 269, 462, 527, 594, 766
MspR9I	CCNGG	5 cut(s)	463, 595, 605, 644, 767
MvaI	CCWGG	2 cut(s)	605, 644
MvnI	CGCG	1 cut(s)	535
MwoI	GCNNNNNNNGC	7 cut(s)	251, 260, 309, 458, 467, 532, 541
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	3 cut(s)	463, 595, 767
NdeII	GATC	4 cut(s)	156, 213, 376, 549
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	6 cut(s)	169, 229, 277, 356, 391, 451
NlaIV	GGNNCC	5 cut(s)	203, 253, 531, 577, 954
NspI	RCATGY	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	785
PcsI	WCGNNNNNNNCGW	1 cut(s)	783
PdmI	GAANNNNTTC	2 cut(s)	189, 839
PfeI	GAWTC	2 cut(s)	169, 196
PfoI	TCCNGGA	1 cut(s)	603
PinAI	ACCGGT	1 cut(s)	268
PkrI	GCNGC	7 cut(s)	286, 305, 319, 358, 534, 592, 894
PleI	GAGTC	1 cut(s)	675
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	603, 642
PspFI	CCCAGC	1 cut(s)	697
PspGI	CCWGG	2 cut(s)	603, 642
PspN4I	GGNNCC	5 cut(s)	203, 253, 531, 577, 954
PspPI	GGNCC	2 cut(s)	607, 620
PstNI	CAGNNNCTG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	3 cut(s)	203, 351, 764
RsaNI	GTAC	3 cut(s)	202, 350, 763
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	897
SatI	GCNGC	7 cut(s)	285, 304, 318, 357, 533, 591, 893
Sau3AI	GATC	4 cut(s)	156, 213, 376, 549
Sau96I	GGNCC	2 cut(s)	607, 620
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	5 cut(s)	463, 595, 605, 644, 767
SduI	GDGCHC	3 cut(s)	77, 119, 677
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	961
SfoI	GGCGCC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	785
SinI	GGWCC	1 cut(s)	607
SlaI	CTCGAG	1 cut(s)	785
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	2 cut(s)	122, 785
SmoI	CTYRAG	2 cut(s)	122, 785
Sse9I	AATT	2 cut(s)	432, 635
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	5 cut(s)	461, 593, 603, 642, 765
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	6 cut(s)	14, 113, 129, 342, 422, 786
TasI	AATT	2 cut(s)	432, 635
TauI	GCSGC	5 cut(s)	306, 320, 359, 535, 593
TfiI	GAWTC	2 cut(s)	169, 196
Tru1I	TTAA	1 cut(s)	897
Tru9I	TTAA	1 cut(s)	897
TscAI	CASTG	1 cut(s)	677
TseI	GCWGC	2 cut(s)	284, 892
TspDTI	ATGAA	3 cut(s)	75, 182, 812
TspGWI	ACGGA	3 cut(s)	226, 372, 421
TspRI	CASTG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	607
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	356
XhoI	CTCGAG	1 cut(s)	785
XmnI	GAANNNNTTC	2 cut(s)	189, 839
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.