Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013148

Physical Location & Seq

Genomic Coordinates Reverse (-)

40411175 .. 40413869

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGTTATTGACCAAATAATCCCTGGTCACCTAGTGAACGGGGCTGTCTTCTACTATCAGAGATTTCAGAAATCTGTAATGGCGTTCTCAGTGGTTTCGACTCCGGTGCATTTCCACATACCGAAAAAGCTTACTTTCCGAATTCGGTGTTGCGCGGCTTCATCGTTTTCGACCCGATCAAAGTCGACCCGGTTCGATTTGAAAACCTACTGGACGACGCTGATCGCCGATATCAACCACAAGCTTAACGAGGCGGTTCCGGTTCGGTATCCTGAGCTGATCTACGAGTCCATGCGCTACTCTGTTCTCGCCGACGGCGCCAAGAGGGCTTCTCCAGTCATGTGCGTCGCCGCCTGTGAGCTCTTCGGCGGTGACCGCCTCGCCGCGTTCCCCACCGCCTGTGCTCTCGAAATGGTGCATGCAGCTTCACTCATACACGATGATCTTCCTTGCATGGATGACGACCCGTCTCGTCGCGGGCAGCCTTCTAACCACACAGTCTACGGCGAAGACATGGCAATTCTTGCTGGTGATGCTCTGTTCCCTTTAGGATTTCAGCACATTGTGTCAAACACGCCTTCAGATCTTGTGCCGGAGGCTCGACTTCTGCGTGTGATCACGGAGATTGCCAGAACTGTTGGGTCCACCGGCATGGCGGCTGGTCAGTTCCTTGACCTGGAAGGAGGGCCTAATGCGGTTGAATTCGTGCAGGAGAAGAAGTTTGGGGAAATGGGTGAGTGTTCTGCTGTCTGCGGAGGACTGCTAGCTGGTGCCGAAGATGAGGAGGTAGACAGACTGAGGAGGTACGGGAGAGCTGTTGGGGTTTTGTACCAAGTGGTTGATGATATTCTTGAAGAGAAGAAGAATGGTAAGGATGAGAATGAGAAGAAGGGGAAGAAAGGGAAGAGCTATGTGAAAGTTTATGGGGTTGAAAAGGCTATTGAGGTAGCAGAGAAGCTTAGATCCCAAGCTAAGCAGGAGTTAGATGGGTTTGAGAAGTATGGTGATGGTGTGGTGCCACTTCATAGCTTTGTGGATTATGCAGTTGATAGAAGTTTTAGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034357 GO:0042214 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

355

Amino Acids

39.15

Weight (kDa)

5.9

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	92 - 293	1.7e-34	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38460
fragaria_vesca	FvH4_2g15810
malus_domestica	MD05G1127100.v1.1 MD12G1092700.v1.1
prunus_persica	Prupe.8G170800_v2.0.a1
pyrus_communis	pycom05g12290 pycom10g11180
rosa_chinensis	RchiOBHm_Chr6g0279181
rosa_laevigata	RLG00000013157
rosa_multiflora	Rmu_sc0014203.1_g000011 Rmu_sc0014536.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189050
rosa_rugosa	Rorug06G0123500
rosa_samantha	Rh6AG231800 Rh6BG236700 Rh6CG238600 Rh6DG230200
rosa_wichuraiana	Rw6G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	317, 770, 1015
AccI	GTMKAC	3 cut(s)	185, 501, 789
AccII	CGCG	3 cut(s)	155, 386, 477
AclWI	GGATC	1 cut(s)	957
AcsI	RAATTY	2 cut(s)	141, 701
AcuI	CTGAAG	1 cut(s)	564
AcyI	GRCGYC	1 cut(s)	318
AdeI	CACNNNGTG	2 cut(s)	34, 565
AfaI	GTAC	2 cut(s)	806, 830
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	4 cut(s)	202, 701, 854, 932
AhdI	GACNNNNNGTC	1 cut(s)	466
AjnI	CCWGG	2 cut(s)	22, 675
Alw21I	GWGCWC	2 cut(s)	363, 406
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	957
AoxI	GGCC	1 cut(s)	686
ApeKI	GCWGC	2 cut(s)	422, 481
ApoI	RAATTY	2 cut(s)	141, 701
AspLEI	GCGC	3 cut(s)	155, 297, 320
AspS9I	GGNCC	2 cut(s)	642, 686
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	5 cut(s)	20, 383, 542, 746, 1016
AsuNHI	GCTAGC	1 cut(s)	763
AvaII	GGWCC	1 cut(s)	642
BanI	GGYRCC	3 cut(s)	317, 770, 1015
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	40, 516
Bbv12I	GWGCWC	2 cut(s)	363, 406
BbvI	GCAGC	2 cut(s)	434, 493
BccI	CCATC	2 cut(s)	980, 1001
BceAI	ACGGC	2 cut(s)	331, 520
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	2 cut(s)	24, 677
BciVI	GTATCC	1 cut(s)	279
BclI	TGATCA	1 cut(s)	615
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	2 cut(s)	32, 764
BfoI	RGCGCY	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	279
BglI	GCCNNNNNGGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	6 cut(s)	156, 351, 384, 423, 482, 657
BlpI	GCTNAGC	1 cut(s)	972
BlsI	GCNGC	6 cut(s)	157, 352, 385, 424, 483, 658
Bme1390I	CCNGG	3 cut(s)	24, 190, 677
Bme18I	GGWCC	1 cut(s)	642
BmeRI	GACNNNNNGTC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	642, 686
BmiI	GGNNCC	5 cut(s)	258, 319, 643, 772, 1017
BmrFI	CCNGG	3 cut(s)	24, 190, 677
BmsI	GCATC	1 cut(s)	523
BmtI	GCTAGC	1 cut(s)	767
BpiI	GAAGAC	2 cut(s)	40, 516
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	972
BpuMI	CCSGG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	2 cut(s)	103, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	215, 335
BseBI	CCWGG	2 cut(s)	24, 677
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	463, 880
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMII	CTCAG	3 cut(s)	102, 264, 788
BseNI	ACTGG	2 cut(s)	215, 335
BseRI	GAGGAG	2 cut(s)	797, 814
BseXI	GCAGC	2 cut(s)	434, 493
BsgI	GTGCAG	1 cut(s)	728
Bsh1236I	CGCG	3 cut(s)	155, 386, 477
BshFI	GGCC	1 cut(s)	688
BshNI	GGYRCC	3 cut(s)	317, 770, 1015
BsiHKAI	GWGCWC	2 cut(s)	363, 406
BsiSI	CCGG	5 cut(s)	104, 190, 260, 593, 648
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	1 cut(s)	474
BsmBI	CGTCTC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	688
Bsp1286I	GDGCHC	2 cut(s)	363, 406
Bsp143I	GATC	7 cut(s)	176, 222, 279, 442, 583, 615, 962
Bsp1720I	GCTNAGC	1 cut(s)	972
BspANI	GGCC	1 cut(s)	688
BspCNI	CTCAG	3 cut(s)	101, 265, 789
BspFNI	CGCG	3 cut(s)	155, 386, 477
BspLI	GGNNCC	5 cut(s)	258, 319, 643, 772, 1017
BspOI	GCTAGC	1 cut(s)	767
BspPI	GGATC	1 cut(s)	957
BspQI	GCTCTTC	2 cut(s)	368, 899
BspT107I	GGYRCC	3 cut(s)	317, 770, 1015
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	2 cut(s)	215, 335
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	7 cut(s)	176, 222, 279, 442, 583, 615, 962
BssNI	GRCGYC	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	24, 677
Bst4CI	ACNGT	2 cut(s)	499, 637
Bst6I	CTCTTC	3 cut(s)	368, 849, 899
BstACI	GRCGYC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	420, 479, 765
BstDEI	CTNAG	5 cut(s)	88, 273, 797, 959, 972
BstEII	GGTNACC	2 cut(s)	26, 371
BstF5I	GGATG	2 cut(s)	463, 880
BstFNI	CGCG	3 cut(s)	155, 386, 477
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	3 cut(s)	155, 297, 320
BstKTI	GATC	7 cut(s)	179, 225, 282, 445, 586, 618, 965
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	7 cut(s)	176, 222, 279, 442, 583, 615, 962
BstMWI	GCNNNNNNNGC	5 cut(s)	317, 326, 375, 524, 533
BstNI	CCWGG	2 cut(s)	24, 677
BstNSI	RCATGY	1 cut(s)	422
BstPI	GGTNACC	2 cut(s)	26, 371
BstSCI	CCNGG	3 cut(s)	22, 188, 675
BstUI	CGCG	3 cut(s)	155, 386, 477
BstV1I	GCAGC	2 cut(s)	434, 493
BstV2I	GAAGAC	2 cut(s)	40, 516
BstX2I	RGATCY	2 cut(s)	583, 962
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	2 cut(s)	583, 962
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	463, 880
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	420, 479, 765
CfoI	GCGC	3 cut(s)	155, 297, 320
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	2 cut(s)	642, 686
CseI	GACGC	2 cut(s)	226, 334
Csp6I	GTAC	2 cut(s)	805, 829
CviAII	CATG	6 cut(s)	292, 340, 419, 454, 514, 652
CviQI	GTAC	2 cut(s)	805, 829
DdeI	CTNAG	5 cut(s)	88, 273, 797, 959, 972
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	7 cut(s)	178, 224, 281, 444, 585, 617, 964
DpnII	GATC	7 cut(s)	176, 222, 279, 442, 583, 615, 962
DraIII	CACNNNGTG	2 cut(s)	34, 565
DriI	GACNNNNNGTC	1 cut(s)	466
Eam1104I	CTCTTC	3 cut(s)	368, 849, 899
Eam1105I	GACNNNNNGTC	1 cut(s)	466
EarI	CTCTTC	3 cut(s)	368, 849, 899
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	642
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	564
Eco91I	GGTNACC	2 cut(s)	26, 371
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	686
EcoO65I	GGTNACC	2 cut(s)	26, 371
EcoRI	GAATTC	2 cut(s)	141, 701
EcoRII	CCWGG	2 cut(s)	22, 675
EcoRV	GATATC	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	363
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	6 cut(s)	295, 343, 422, 457, 517, 655
FatI	CATG	6 cut(s)	291, 339, 418, 453, 513, 651
FauI	CCCGC	1 cut(s)	470
FbaI	TGATCA	1 cut(s)	615
FblI	GTMKAC	3 cut(s)	185, 501, 789
Fnu4HI	GCNGC	6 cut(s)	156, 351, 384, 423, 482, 657
FokI	GGATG	2 cut(s)	470, 887
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	6 cut(s)	156, 351, 384, 423, 482, 657
FspBI	CTAG	2 cut(s)	32, 764
GlaI	GCGC	3 cut(s)	154, 296, 319
GluI	GCNGC	6 cut(s)	156, 351, 384, 423, 482, 657
GsuI	CTGGAG	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	688
HapII	CCGG	5 cut(s)	104, 190, 260, 593, 648
HgaI	GACGC	2 cut(s)	226, 334
HhaI	GCGC	3 cut(s)	155, 297, 320
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	6 cut(s)	295, 343, 422, 457, 517, 655
Hin6I	GCGC	3 cut(s)	153, 295, 318
HinP1I	GCGC	3 cut(s)	153, 295, 318
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HindIII	AAGCTT	3 cut(s)	128, 242, 956
HinfI	GANTC	2 cut(s)	100, 287
HpaII	CCGG	5 cut(s)	104, 190, 260, 593, 648
HphI	GGTGA	5 cut(s)	20, 383, 542, 746, 1016
Hpy166II	GTNNAC	5 cut(s)	37, 186, 502, 645, 790
Hpy188I	TCNGA	4 cut(s)	60, 69, 140, 583
Hpy188III	TCNNGA	3 cut(s)	272, 407, 851
Hpy8I	GTNNAC	5 cut(s)	37, 186, 502, 645, 790
Hpy99I	CGWCG	4 cut(s)	220, 317, 350, 477
HpyAV	CCTTC	4 cut(s)	495, 588, 674, 883
HpyCH4III	ACNGT	2 cut(s)	499, 637
HpyCH4V	TGCA	6 cut(s)	109, 418, 422, 453, 709, 1043
HpyF10VI	GCNNNNNNNGC	5 cut(s)	317, 326, 375, 524, 533
HpyF3I	CTNAG	5 cut(s)	88, 273, 797, 959, 972
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	6 cut(s)	295, 343, 422, 457, 517, 655
HspAI	GCGC	3 cut(s)	153, 295, 318
KasI	GGCGCC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	7 cut(s)	176, 222, 279, 442, 583, 615, 962
LguI	GCTCTTC	2 cut(s)	368, 899
Lsp1109I	GCAGC	2 cut(s)	434, 493
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	2 cut(s)	32, 764
MaeIII	GTNAC	2 cut(s)	26, 371
MalI	GATC	7 cut(s)	178, 224, 281, 444, 585, 617, 964
MboI	GATC	7 cut(s)	176, 222, 279, 442, 583, 615, 962
MflI	RGATCY	2 cut(s)	583, 962
MhlI	GDGCHC	2 cut(s)	363, 406
MluCI	AATT	3 cut(s)	141, 519, 701
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	94, 296
MseI	TTAA	2 cut(s)	246, 1066
MslI	CAYNNNNRTG	1 cut(s)	650
MspI	CCGG	5 cut(s)	104, 190, 260, 593, 648
MspR9I	CCNGG	3 cut(s)	24, 190, 677
MvaI	CCWGG	2 cut(s)	24, 677
MvnI	CGCG	3 cut(s)	155, 386, 477
MwoI	GCNNNNNNNGC	5 cut(s)	317, 326, 375, 524, 533
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	7 cut(s)	176, 222, 279, 442, 583, 615, 962
NheI	GCTAGC	1 cut(s)	763
NlaIII	CATG	6 cut(s)	295, 343, 422, 457, 517, 655
NlaIV	GGNNCC	5 cut(s)	258, 319, 643, 772, 1017
NmuCI	GTSAC	2 cut(s)	26, 371
NspI	RCATGY	1 cut(s)	422
PaeI	GCATGC	1 cut(s)	422
PciSI	GCTCTTC	2 cut(s)	368, 899
PcsI	WCGNNNNNNNCGW	1 cut(s)	607
PkrI	GCNGC	6 cut(s)	157, 352, 385, 424, 483, 658
PleI	GAGTC	2 cut(s)	94, 295
PluTI	GGCGCC	1 cut(s)	321
PpsI	GAGTC	2 cut(s)	94, 295
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	22, 675
PspEI	GGTNACC	2 cut(s)	26, 371
PspGI	CCWGG	2 cut(s)	22, 675
PspN4I	GGNNCC	5 cut(s)	258, 319, 643, 772, 1017
PspPI	GGNCC	2 cut(s)	642, 686
PsuI	RGATCY	2 cut(s)	583, 962
RsaI	GTAC	2 cut(s)	806, 830
RsaNI	GTAC	2 cut(s)	805, 829
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	363
SalI	GTCGAC	1 cut(s)	184
SapI	GCTCTTC	2 cut(s)	368, 899
SaqAI	TTAA	2 cut(s)	246, 1066
SatI	GCNGC	6 cut(s)	156, 351, 384, 423, 482, 657
Sau3AI	GATC	7 cut(s)	176, 222, 279, 442, 583, 615, 962
Sau96I	GGNCC	2 cut(s)	642, 686
SchI	GAGTC	2 cut(s)	94, 296
ScrFI	CCNGG	3 cut(s)	24, 190, 677
SduI	GDGCHC	2 cut(s)	363, 406
SfaNI	GCATC	1 cut(s)	523
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	642
SmiMI	CAYNNNNRTG	1 cut(s)	650
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	3 cut(s)	141, 519, 701
SspDI	GGCGCC	1 cut(s)	317
SspMI	CTAG	2 cut(s)	32, 764
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	22, 188, 675
TaaI	ACNGT	2 cut(s)	499, 637
TaqI	TCGA	6 cut(s)	98, 170, 185, 195, 408, 601
TasI	AATT	3 cut(s)	141, 519, 701
TauI	GCSGC	4 cut(s)	158, 353, 386, 659
Tru1I	TTAA	2 cut(s)	246, 1066
Tru9I	TTAA	2 cut(s)	246, 1066
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	26, 371
TseI	GCWGC	2 cut(s)	422, 481
Tsp45I	GTSAC	2 cut(s)	26, 371
TspDTI	ATGAA	2 cut(s)	150, 1013
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	642
XapI	RAATTY	2 cut(s)	141, 701
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmiI	GTMKAC	3 cut(s)	185, 501, 789
XspI	CTAG	2 cut(s)	32, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.