Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013148

Physical Location & Seq

Genomic Coordinates Reverse (-)

14717749 .. 14718285

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCGTTACTCTATGCTGGCCGACGGCGCCAAGCGAGCCTCATCTGTCATGTGCGTCACCGCCTGTGAGCTCTTCGGCGGCAACAGCCTCGCCGCCTTCCCCACCGCATGTGCTCTCGAAATGGTACATGCGGCTTCGCTCAGGCACGATGATCTTCCATGCATGGATGACGATCCATCACGGCGACGCCAGCCCTCGAACTACACAATCTACGGAGACAACATGGCACTCTTCGCCGGCGATAGTCTGTTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034357 GO:0042214 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

86

Amino Acids

9.22

Weight (kDa)

5.03

Isoelectric Point (pI)

61.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38460
fragaria_vesca	FvH4_2g15810
malus_domestica	MD05G1127100.v1.1 MD12G1092700.v1.1
prunus_persica	Prupe.8G170800_v2.0.a1
pyrus_communis	pycom05g12290 pycom10g11180
rosa_chinensis	RchiOBHm_Chr6g0279181
rosa_laevigata	RLG00000013157
rosa_multiflora	Rmu_sc0014203.1_g000011 Rmu_sc0014536.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189050
rosa_rugosa	Rorug06G0123500
rosa_samantha	Rh6AG231800 Rh6BG236700 Rh6CG238600 Rh6DG230200
rosa_wichuraiana	Rw6G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	5 cut(s)	60, 78, 93, 105, 131
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	18
AcyI	GRCGYC	2 cut(s)	27, 187
AfaI	GTAC	1 cut(s)	126
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	2 cut(s)	72, 115
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	72, 115
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	2 cut(s)	40, 197
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BcoDI	GTCTC	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	3 cut(s)	79, 93, 132
BlsI	GCNGC	3 cut(s)	80, 94, 133
BmiI	GGNNCC	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	2 cut(s)	27, 187
Bse118I	RCCGGY	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	171
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	72, 115
BsiSI	CCGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	72, 115
Bsp143I	GATC	2 cut(s)	151, 172
BspACI	CCGC	5 cut(s)	60, 78, 93, 105, 131
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	167
BspQI	GCTCTTC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	2 cut(s)	151, 172
BssNI	GRCGYC	2 cut(s)	27, 187
Bst6I	CTCTTC	2 cut(s)	77, 236
BstACI	GRCGYC	2 cut(s)	27, 187
BstC8I	GCNNGC	4 cut(s)	18, 36, 191, 238
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	154, 175
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	151, 172
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 35, 84, 190, 233
BstNSI	RCATGY	2 cut(s)	111, 131
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	172
Cac8I	GCNNGC	4 cut(s)	18, 36, 191, 238
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	236
CseI	GACGC	2 cut(s)	43, 195
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	6 cut(s)	49, 108, 128, 159, 163, 223
CviJI	RGCY	6 cut(s)	20, 38, 70, 87, 134, 193
CviKI_1	RGCY	6 cut(s)	20, 38, 70, 87, 134, 193
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	140
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	2 cut(s)	153, 174
DpnII	GATC	2 cut(s)	151, 172
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	77, 236
EarI	CTCTTC	2 cut(s)	77, 236
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	72
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	6 cut(s)	52, 111, 131, 162, 166, 226
FaiI	YATR	8 cut(s)	14, 50, 109, 129, 160, 164, 224, 256
FatI	CATG	6 cut(s)	48, 107, 127, 158, 162, 222
Fnu4HI	GCNGC	3 cut(s)	79, 93, 132
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	3 cut(s)	79, 93, 132
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	79, 93, 132
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	2 cut(s)	43, 195
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	2 cut(s)	27, 187
Hin1II	CATG	6 cut(s)	52, 111, 131, 162, 166, 226
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	116
Hpy99I	CGWCG	2 cut(s)	26, 189
HpyAV	CCTTC	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 35, 84, 190, 233
HpyF3I	CTNAG	1 cut(s)	140
Hsp92I	GRCGYC	2 cut(s)	27, 187
Hsp92II	CATG	6 cut(s)	52, 111, 131, 162, 166, 226
HspAI	GCGC	1 cut(s)	27
KasI	GGCGCC	1 cut(s)	26
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	151, 172
LguI	GCTCTTC	1 cut(s)	77
LpnPI	CCDG	5 cut(s)	2, 76, 127, 203, 250
MaeIII	GTNAC	2 cut(s)	5, 55
MalI	GATC	2 cut(s)	153, 174
MboI	GATC	2 cut(s)	151, 172
MboII	GAAGA	3 cut(s)	64, 146, 223
MhlI	GDGCHC	2 cut(s)	72, 115
Mly113I	GGCGCC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	49, 98, 205
Mph1103I	ATGCAT	1 cut(s)	164
MreI	CGCCGGCG	1 cut(s)	236
MroNI	GCCGGC	1 cut(s)	236
MspI	CCGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	26, 35, 84, 190, 233
NaeI	GCCGGC	1 cut(s)	238
NarI	GGCGCC	1 cut(s)	27
NdeII	GATC	2 cut(s)	151, 172
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	6 cut(s)	52, 111, 131, 162, 166, 226
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	164
NspI	RCATGY	2 cut(s)	111, 131
PciSI	GCTCTTC	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	80, 94, 133
PluTI	GGCGCC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	77
SatI	GCNGC	3 cut(s)	79, 93, 132
Sau3AI	GATC	2 cut(s)	151, 172
SduI	GDGCHC	2 cut(s)	72, 115
SetI	ASST	1 cut(s)	72
SfoI	GGCGCC	1 cut(s)	28
SgrAI	CRCCGGYG	1 cut(s)	236
SsiI	CCGC	5 cut(s)	60, 78, 93, 105, 131
SspDI	GGCGCC	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	72
TaqI	TCGA	2 cut(s)	117, 197
TauI	GCSGC	3 cut(s)	81, 95, 134
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	228
XceI	RCATGY	2 cut(s)	111, 131
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.