Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013148

Physical Location & Seq

Genomic Coordinates Forward (+)

28803327 .. 28804681

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGTTCTCAGTGGTTTCGACTCCGGCGCATTTCCACATACCGAAGAAGCTTACTTTCCGAATTCGGTGTTGCGCGGCTTCATCGGTTTCGACCCGGTCAAAGTCGACCCGGTTCGATTTGAAAACCTACTGGACGACGCTGATCGCCGATATCAACAACAAGCTCAACGAGGCGGTTCCGGTTCGGTATCCTGAGCTGATCTACGAGTCCATGCGCTACTCCGTTCTCGCCGACGGCGCCAAGAGGGCTTCTCCGGTCATGTGCGTCGCCGCCTGTGAGCTCTTCGGCGGTGACCGCCTCGCCGCCTTCCCCACCGCCTGTGCTCTCGAAATGGTACATGCAGCTTCACTCATACACGATGATCTTCCTTGCATGGATGACGACCCGTCTCGTCGTGGGCAGCCTTCTAACCACAAAGTCTACGGCGAAGACATGGCAATTCTTGCTGGTGATGCTCTGTTTCCTTTAGGATTTCAGCACATTGTGTCAAACACGCCTTCAGATCTTGTGCCAGAGGCTCGACTTCTGCGTGTGATCACGGAGATTGCCAGAACTGTTGGGTCCACCGGCATGGCGGCGGGTCAGTTCCTTGACCTGGAAGGAGGGCCTAATGCAGTTGAATTCGTGCAGGAGAAGAAGTTTGGGGAAATGGGTGAGTGCTCTGCTGTTTGCGGAGGACTGCTAGCTGGTGCGGAAGATGAGGAGGTAGATAGTCTGAGGAGGTACGGGAGAGCTGTTGGGGTTTTGTATCAAGTGGTTGATGATATTCTTGAAGAGAAGAAGAATGGTAAGGATGAGAATGAGAAGAAGGCGAAGAAAGGAAAGAGCTATGTGAAAGTTTATGGGGTTGAAAAGGCTATGGAGGTAGCAGAGAAGCTTAGATCCCAAGCTAAGCAGGAGTTAGATGGGTTTGAGAAGTATGGTGATGGTGTGGTGCCACTTCATAGCTTTGTGGATTATGCAGTTGATAGAAGTTTTAGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034357 GO:0042214 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

329

Amino Acids

36.03

Weight (kDa)

5.62

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	66 - 285	4.9e-35	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38460
fragaria_vesca	FvH4_2g15810
malus_domestica	MD05G1127100.v1.1 MD12G1092700.v1.1
prunus_persica	Prupe.8G170800_v2.0.a1
pyrus_communis	pycom05g12290 pycom10g11180
rosa_chinensis	RchiOBHm_Chr6g0279181
rosa_laevigata	RLG00000013157
rosa_multiflora	Rmu_sc0014203.1_g000011 Rmu_sc0014536.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189050
rosa_rugosa	Rorug06G0123500
rosa_samantha	Rh6AG231800 Rh6BG236700 Rh6CG238600 Rh6DG230200
rosa_wichuraiana	Rw6G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	239, 937
AccI	GTMKAC	2 cut(s)	107, 423
AccII	CGCG	1 cut(s)	77
AclWI	GGATC	1 cut(s)	879
AcsI	RAATTY	2 cut(s)	63, 623
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	487
AfaI	GTAC	2 cut(s)	339, 728
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	4 cut(s)	124, 623, 776, 854
AhdI	GACNNNNNGTC	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	597
Alw21I	GWGCWC	3 cut(s)	285, 328, 665
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	879
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	2 cut(s)	344, 403
ApoI	RAATTY	2 cut(s)	63, 623
AspLEI	GCGC	4 cut(s)	31, 77, 219, 242
AspS9I	GGNCC	2 cut(s)	564, 608
AsuC2I	CCSGG	2 cut(s)	97, 112
AsuHPI	GGTGA	4 cut(s)	305, 464, 668, 938
AsuNHI	GCTAGC	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	564
BanI	GGYRCC	2 cut(s)	239, 937
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	3 cut(s)	285, 328, 665
BbvI	GCAGC	2 cut(s)	356, 415
BccI	CCATC	2 cut(s)	902, 923
BceAI	ACGGC	2 cut(s)	253, 442
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	201
BclI	TGATCA	1 cut(s)	537
BcnI	CCSGG	2 cut(s)	97, 112
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	686
BfoI	RGCGCY	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
BlpI	GCTNAGC	1 cut(s)	894
BlsI	GCNGC	6 cut(s)	79, 274, 307, 346, 405, 580
Bme1390I	CCNGG	3 cut(s)	97, 112, 599
Bme18I	GGWCC	1 cut(s)	564
BmeRI	GACNNNNNGTC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	564, 608
BmiI	GGNNCC	4 cut(s)	180, 241, 565, 939
BmrFI	CCNGG	3 cut(s)	97, 112, 599
BmsI	GCATC	1 cut(s)	445
BmtI	GCTAGC	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	894
BpuMI	CCSGG	2 cut(s)	97, 112
BsaHI	GRCGYC	1 cut(s)	240
BsaWI	WCCGGW	2 cut(s)	181, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	599
BseGI	GGATG	2 cut(s)	385, 802
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	3 cut(s)	24, 186, 710
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	719, 736
BseXI	GCAGC	2 cut(s)	356, 415
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	610
BshNI	GGYRCC	2 cut(s)	239, 937
BsiHKAI	GWGCWC	3 cut(s)	285, 328, 665
BsiSI	CCGG	6 cut(s)	26, 97, 112, 182, 257, 570
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	610
Bsp1286I	GDGCHC	3 cut(s)	285, 328, 665
Bsp143I	GATC	6 cut(s)	144, 201, 364, 505, 537, 884
Bsp1720I	GCTNAGC	1 cut(s)	894
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	3 cut(s)	23, 187, 711
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	4 cut(s)	180, 241, 565, 939
BspOI	GCTAGC	1 cut(s)	689
BspPI	GGATC	1 cut(s)	879
BspQI	GCTCTTC	1 cut(s)	290
BspT107I	GGYRCC	2 cut(s)	239, 937
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	569
BssMI	GATC	6 cut(s)	144, 201, 364, 505, 537, 884
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	2 cut(s)	290, 771
BstACI	GRCGYC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	5 cut(s)	10, 195, 719, 881, 894
BstEII	GGTNACC	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	385, 802
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	4 cut(s)	31, 77, 219, 242
BstKTI	GATC	6 cut(s)	147, 204, 367, 508, 540, 887
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	6 cut(s)	144, 201, 364, 505, 537, 884
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 248, 297, 446, 455
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	344
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	95, 110, 597
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	356, 415
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	505, 884
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	2 cut(s)	505, 884
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	610
BtsCI	GGATG	2 cut(s)	385, 802
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	687
CfoI	GCGC	4 cut(s)	31, 77, 219, 242
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	564, 608
CseI	GACGC	2 cut(s)	148, 256
Csp6I	GTAC	2 cut(s)	338, 727
CviAII	CATG	6 cut(s)	214, 262, 341, 376, 436, 574
CviQI	GTAC	2 cut(s)	338, 727
DdeI	CTNAG	5 cut(s)	10, 195, 719, 881, 894
DinI	GGCGCC	1 cut(s)	241
DpnI	GATC	6 cut(s)	146, 203, 366, 507, 539, 886
DpnII	GATC	6 cut(s)	144, 201, 364, 505, 537, 884
DraIII	CACNNNGTG	1 cut(s)	487
DriI	GACNNNNNGTC	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	290, 771
Eam1105I	GACNNNNNGTC	1 cut(s)	388
EarI	CTCTTC	2 cut(s)	290, 771
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	564
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	486
Eco91I	GGTNACC	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	293
EcoRI	GAATTC	2 cut(s)	63, 623
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	241
EheI	GGCGCC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	6 cut(s)	217, 265, 344, 379, 439, 577
FatI	CATG	6 cut(s)	213, 261, 340, 375, 435, 573
FauI	CCCGC	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	2 cut(s)	107, 423
Fnu4HI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
FokI	GGATG	2 cut(s)	392, 809
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
FspBI	CTAG	1 cut(s)	686
GlaI	GCGC	4 cut(s)	30, 76, 218, 241
GluI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	6 cut(s)	26, 97, 112, 182, 257, 570
HgaI	GACGC	2 cut(s)	148, 256
HhaI	GCGC	4 cut(s)	31, 77, 219, 242
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	217, 265, 344, 379, 439, 577
Hin6I	GCGC	4 cut(s)	29, 75, 217, 240
HinP1I	GCGC	4 cut(s)	29, 75, 217, 240
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	2 cut(s)	50, 878
HinfI	GANTC	2 cut(s)	22, 209
HpaII	CCGG	6 cut(s)	26, 97, 112, 182, 257, 570
HphI	GGTGA	4 cut(s)	305, 464, 668, 938
Hpy166II	GTNNAC	3 cut(s)	108, 424, 567
Hpy188I	TCNGA	3 cut(s)	62, 505, 720
Hpy188III	TCNNGA	3 cut(s)	194, 329, 773
Hpy8I	GTNNAC	3 cut(s)	108, 424, 567
Hpy99I	CGWCG	4 cut(s)	142, 239, 272, 399
HpyAV	CCTTC	5 cut(s)	319, 417, 510, 596, 805
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4V	TGCA	5 cut(s)	344, 375, 617, 631, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 248, 297, 446, 455
HpyF3I	CTNAG	5 cut(s)	10, 195, 719, 881, 894
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	6 cut(s)	217, 265, 344, 379, 439, 577
HspAI	GCGC	4 cut(s)	29, 75, 217, 240
KasI	GGCGCC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	6 cut(s)	144, 201, 364, 505, 537, 884
LguI	GCTCTTC	1 cut(s)	290
Lsp1109I	GCAGC	2 cut(s)	356, 415
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	6 cut(s)	146, 203, 366, 507, 539, 886
MboI	GATC	6 cut(s)	144, 201, 364, 505, 537, 884
MflI	RGATCY	2 cut(s)	505, 884
MhlI	GDGCHC	3 cut(s)	285, 328, 665
MluCI	AATT	3 cut(s)	63, 441, 623
Mly113I	GGCGCC	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	16, 218
MseI	TTAA	1 cut(s)	988
MslI	CAYNNNNRTG	1 cut(s)	572
MspI	CCGG	6 cut(s)	26, 97, 112, 182, 257, 570
MspR9I	CCNGG	3 cut(s)	97, 112, 599
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	5 cut(s)	239, 248, 297, 446, 455
NarI	GGCGCC	1 cut(s)	240
NciI	CCSGG	2 cut(s)	97, 112
NdeII	GATC	6 cut(s)	144, 201, 364, 505, 537, 884
NheI	GCTAGC	1 cut(s)	685
NlaIII	CATG	6 cut(s)	217, 265, 344, 379, 439, 577
NlaIV	GGNNCC	4 cut(s)	180, 241, 565, 939
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	529
PflFI	GACNNNGTC	1 cut(s)	97
PkrI	GCNGC	6 cut(s)	79, 274, 307, 346, 405, 580
PleI	GAGTC	2 cut(s)	16, 217
PluTI	GGCGCC	1 cut(s)	243
PpsI	GAGTC	2 cut(s)	16, 217
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	597
PspEI	GGTNACC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	4 cut(s)	180, 241, 565, 939
PspPI	GGNCC	2 cut(s)	564, 608
PsuI	RGATCY	2 cut(s)	505, 884
PsyI	GACNNNGTC	1 cut(s)	97
RsaI	GTAC	2 cut(s)	339, 728
RsaNI	GTAC	2 cut(s)	338, 727
RseI	CAYNNNNRTG	1 cut(s)	572
SacI	GAGCTC	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	988
SatI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
Sau3AI	GATC	6 cut(s)	144, 201, 364, 505, 537, 884
Sau96I	GGNCC	2 cut(s)	564, 608
SchI	GAGTC	2 cut(s)	16, 218
ScrFI	CCNGG	3 cut(s)	97, 112, 599
SduI	GDGCHC	3 cut(s)	285, 328, 665
SfaNI	GCATC	1 cut(s)	445
SfoI	GGCGCC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	572
Sse9I	AATT	3 cut(s)	63, 441, 623
SspDI	GGCGCC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	686
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	3 cut(s)	95, 110, 597
TaaI	ACNGT	1 cut(s)	559
TaqI	TCGA	6 cut(s)	20, 92, 107, 117, 330, 523
TasI	AATT	3 cut(s)	63, 441, 623
TauI	GCSGC	4 cut(s)	80, 275, 308, 581
Tru1I	TTAA	1 cut(s)	988
Tru9I	TTAA	1 cut(s)	988
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	344, 403
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	2 cut(s)	72, 935
TspGWI	ACGGA	2 cut(s)	214, 557
TspRI	CASTG	1 cut(s)	18
Tth111I	GACNNNGTC	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	564
XapI	RAATTY	2 cut(s)	63, 623
XceI	RCATGY	1 cut(s)	344
XmiI	GTMKAC	2 cut(s)	107, 423
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.