Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013148

Physical Location & Seq

Genomic Coordinates Reverse (-)

17515257 .. 17517487

Gene Structure 2231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCTTCTTTCTCAATGGTTTCAACTCCAGTCCATCTCTACCTCCCAAAGAAGCTAACTTTCCCAATCCGATGCTCCTCTTCTTCATCAGCGCCGTCCGTTTCGCCCCCACCGAACTCGACCCAGTTCGATTTGAAAACCTACTGGACGACCCTGATAGCCGATATCAATCAGAAGCTTCACGAAGCCGTCCCGGTTCGGTACCCAGATCAGATCTATGAATCCATGCGATACTCTGTGCTCGCCGAAGGAGCCAAACGAGCCTCACCGGTCATGTGCGTCGCTGCTTGTGAGCTCTTCGGCGGCAACCGCCTAGCTGCCTTCCCCACAGCCTGTGCTCTTGAAATGGTACACGCAGCTTCACTCATTCACGATGATCTTCCATGCATGGATGACGACCCATCACGCCGGGGCCAGCCCTCGAACCATACAGTCTATGGCGACGACCTGGCAATTCTAGCTGGTGATGCTCTGTTTCCATTGGGGTTTCAGCACATTGTGGCAAACACGCCTTCCAGCCTCGTGCCCGAGCGACGCCTCCTGCGCGTGATCACAGAGATTGCCCGCACCGTGGGGTCCACGGGCATGGCGGCAGGGCAGTTCCTCGACCTGGAAGGCGGGCCGGATGCTATCGAATTCGCGCAGGAGAAGAAGTTTGGGGAGATGAGTCAGTGTTCTGCTGTTTGTGGAGGATTGCTAGGTGGTGCTGAAGATGATGAGGTGGATAGACTGAGGAGGTATGGCAGAGCTGTTGGGGTTTTGTATCGGGTGGTTGATGATATTTTGGAGGACAAAATGAATGGTGAGGATGAGGATGAGCGGAAGAAGAAGAAGGGCTTCAGCTATGTGAGAGTTTATGGGGTTGAGAAGGCTATGGAGGTGGCAGAGCAGCTTAGAGCCAAAGCTAAGCAGGAATTGGATGGATTTGAGAAGTATGGTGATGCTGTGGTGCCACTTTACAGCTTTGTGGATTATGCTGTTGATAGAAGTTTTACTGTCAGCGACTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034357 GO:0042214 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

338

Amino Acids

36.93

Weight (kDa)

5.06

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38460
fragaria_vesca	FvH4_2g15810
malus_domestica	MD05G1127100.v1.1 MD12G1092700.v1.1
prunus_persica	Prupe.8G170800_v2.0.a1
pyrus_communis	pycom05g12290 pycom10g11180
rosa_chinensis	RchiOBHm_Chr6g0279181
rosa_laevigata	RLG00000013157
rosa_multiflora	Rmu_sc0014203.1_g000011 Rmu_sc0014536.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189050
rosa_rugosa	Rorug06G0123500
rosa_samantha	Rh6AG231800 Rh6BG236700 Rh6CG238600 Rh6DG230200
rosa_wichuraiana	Rw6G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	2 cut(s)	201, 949
AccBSI	CCGCTC	1 cut(s)	820
AccII	CGCG	2 cut(s)	546, 641
AciI	CCGC	6 cut(s)	303, 310, 565, 590, 618, 820
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	2 cut(s)	729, 823
AcyI	GRCGYC	1 cut(s)	535
AdeI	CACNNNGTG	1 cut(s)	499
AfaI	GTAC	2 cut(s)	203, 351
AfiI	CCNNNNNNNGG	2 cut(s)	571, 610
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	24, 136, 344
AjnI	CCWGG	2 cut(s)	447, 609
Alw21I	GWGCWC	3 cut(s)	243, 297, 340
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	2 cut(s)	412, 620
ApeKI	GCWGC	4 cut(s)	284, 317, 356, 889
ApoI	RAATTY	1 cut(s)	635
AsiGI	ACCGGT	1 cut(s)	268
Asp700I	GAANNNNTTC	1 cut(s)	836
Asp718I	GGTACC	1 cut(s)	201
AspLEI	GCGC	3 cut(s)	94, 546, 643
AspS9I	GGNCC	3 cut(s)	412, 576, 620
AsuC2I	CCSGG	2 cut(s)	194, 410
AsuHPI	GGTGA	4 cut(s)	258, 476, 815, 950
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	528
BanI	GGYRCC	2 cut(s)	201, 949
BanII	GRGCYC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	521
Bbv12I	GWGCWC	3 cut(s)	243, 297, 340
BbvI	GCAGC	4 cut(s)	271, 304, 368, 901
BccI	CCATC	3 cut(s)	42, 409, 914
BceAI	ACGGC	2 cut(s)	79, 173
BciT130I	CCWGG	2 cut(s)	449, 611
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	2 cut(s)	194, 410
BfaI	CTAG	3 cut(s)	314, 458, 698
BfoI	RGCGCY	1 cut(s)	95
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	6 cut(s)	285, 304, 318, 357, 591, 890
BlpI	GCTNAGC	1 cut(s)	906
BlsI	GCNGC	6 cut(s)	286, 305, 319, 358, 592, 891
Bme1390I	CCNGG	4 cut(s)	194, 410, 449, 611
Bme18I	GGWCC	1 cut(s)	576
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	3 cut(s)	412, 576, 620
BmiI	GGNNCC	5 cut(s)	203, 253, 413, 577, 951
BmrFI	CCNGG	4 cut(s)	194, 410, 449, 611
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	4 cut(s)	62, 457, 616, 931
BmuI	ACTGGG	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	906
BpuEI	CTTGAG	1 cut(s)	991
BpuMI	CCSGG	2 cut(s)	194, 410
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	535
BsaJI	CCNNGG	3 cut(s)	409, 570, 579
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 610
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	3 cut(s)	29, 124, 149
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	449, 611
BseDI	CCNNGG	3 cut(s)	409, 570, 579
BseGI	GGATG	5 cut(s)	397, 631, 814, 820, 925
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	571, 610
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	3 cut(s)	29, 124, 149
BseRI	GAGGAG	2 cut(s)	67, 748
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	4 cut(s)	271, 304, 368, 901
Bsh1236I	CGCG	2 cut(s)	546, 641
BshFI	GGCC	2 cut(s)	414, 622
BshNI	GGYRCC	2 cut(s)	201, 949
BshTI	ACCGGT	1 cut(s)	268
BsiHKAI	GWGCWC	3 cut(s)	243, 297, 340
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	4 cut(s)	194, 269, 409, 623
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	571, 610
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	414, 622
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	4 cut(s)	243, 297, 340, 528
Bsp143I	GATC	4 cut(s)	208, 213, 376, 549
Bsp1720I	GCTNAGC	1 cut(s)	906
BspACI	CCGC	6 cut(s)	303, 310, 565, 590, 618, 820
BspANI	GGCC	2 cut(s)	414, 622
BspCNI	CTCAG	1 cut(s)	723
BspFNI	CGCG	2 cut(s)	546, 641
BspLI	GGNNCC	5 cut(s)	203, 253, 413, 577, 951
BspQI	GCTCTTC	1 cut(s)	302
BspT107I	GGYRCC	2 cut(s)	201, 949
BsrBI	CCGCTC	1 cut(s)	820
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	3 cut(s)	29, 124, 149
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	3 cut(s)	409, 570, 579
BssMI	GATC	4 cut(s)	208, 213, 376, 549
BssNI	GRCGYC	1 cut(s)	535
BssSI	CACGAG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	449, 611
Bst4CI	ACNGT	3 cut(s)	433, 571, 997
Bst6I	CTCTTC	2 cut(s)	85, 302
BstACI	GRCGYC	1 cut(s)	535
BstC8I	GCNNGC	4 cut(s)	243, 416, 565, 620
BstDEI	CTNAG	3 cut(s)	731, 893, 906
BstDSI	CCRYGG	2 cut(s)	570, 579
BstF5I	GGATG	5 cut(s)	397, 631, 814, 820, 925
BstFNI	CGCG	2 cut(s)	546, 641
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	3 cut(s)	94, 546, 643
BstKTI	GATC	4 cut(s)	211, 216, 379, 552
BstMBI	GATC	4 cut(s)	208, 213, 376, 549
BstMWI	GCNNNNNNNGC	6 cut(s)	251, 260, 309, 458, 467, 543
BstNI	CCWGG	2 cut(s)	449, 611
BstSCI	CCNGG	4 cut(s)	192, 408, 447, 609
BstSLI	GKGCMC	1 cut(s)	528
BstUI	CGCG	2 cut(s)	546, 641
BstV1I	GCAGC	4 cut(s)	271, 304, 368, 901
BstX2I	RGATCY	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	414, 622
BtgI	CCRYGG	2 cut(s)	570, 579
BtsCI	GGATG	5 cut(s)	397, 631, 814, 820, 925
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	4 cut(s)	243, 416, 565, 620
CfoI	GCGC	3 cut(s)	94, 546, 643
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	412, 576, 620
CseI	GACGC	2 cut(s)	268, 543
Csp6I	GTAC	2 cut(s)	202, 350
CspAI	ACCGGT	1 cut(s)	268
CviAII	CATG	5 cut(s)	226, 274, 384, 388, 586
CviQI	GTAC	2 cut(s)	202, 350
DdeI	CTNAG	3 cut(s)	731, 893, 906
DpnI	GATC	4 cut(s)	210, 215, 378, 551
DpnII	GATC	4 cut(s)	208, 213, 376, 549
DraIII	CACNNNGTG	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	85, 302
EarI	CTCTTC	2 cut(s)	85, 302
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	576
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	729, 823
Eco88I	CYCGRG	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	447, 609
EcoRV	GATATC	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	5 cut(s)	229, 277, 387, 391, 589
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	5 cut(s)	225, 273, 383, 387, 585
FauI	CCCGC	2 cut(s)	572, 611
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	6 cut(s)	285, 304, 318, 357, 591, 890
FokI	GGATG	5 cut(s)	404, 638, 821, 827, 932
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	6 cut(s)	285, 304, 318, 357, 591, 890
FspBI	CTAG	3 cut(s)	314, 458, 698
GlaI	GCGC	3 cut(s)	93, 545, 642
GluI	GCNGC	6 cut(s)	285, 304, 318, 357, 591, 890
GsuI	CTGGAG	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	414, 622
HapII	CCGG	4 cut(s)	194, 269, 409, 623
HgaI	GACGC	2 cut(s)	268, 543
HhaI	GCGC	3 cut(s)	94, 546, 643
Hin1I	GRCGYC	1 cut(s)	535
Hin1II	CATG	5 cut(s)	229, 277, 387, 391, 589
Hin6I	GCGC	3 cut(s)	92, 544, 641
HinP1I	GCGC	3 cut(s)	92, 544, 641
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	3 cut(s)	221, 667, 1004
HpaII	CCGG	4 cut(s)	194, 269, 409, 623
HphI	GGTGA	4 cut(s)	258, 476, 815, 950
Hpy166II	GTNNAC	2 cut(s)	352, 579
Hpy188I	TCNGA	3 cut(s)	71, 174, 213
Hpy188III	TCNNGA	3 cut(s)	182, 341, 371
Hpy8I	GTNNAC	2 cut(s)	352, 579
Hpy99I	CGWCG	3 cut(s)	284, 446, 537
HpyAV	CCTTC	6 cut(s)	242, 331, 522, 608, 826, 862
HpyCH4III	ACNGT	3 cut(s)	433, 571, 997
HpyCH4V	TGCA	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	6 cut(s)	251, 260, 309, 458, 467, 543
HpyF3I	CTNAG	3 cut(s)	731, 893, 906
Hsp92I	GRCGYC	1 cut(s)	535
Hsp92II	CATG	5 cut(s)	229, 277, 387, 391, 589
HspAI	GCGC	3 cut(s)	92, 544, 641
KpnI	GGTACC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	4 cut(s)	208, 213, 376, 549
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	80, 251
Lsp1109I	GCAGC	4 cut(s)	271, 304, 368, 901
LweI	GCATC	4 cut(s)	62, 457, 616, 931
MaeI	CTAG	3 cut(s)	314, 458, 698
MalI	GATC	4 cut(s)	210, 215, 378, 551
MbiI	CCGCTC	1 cut(s)	820
MboI	GATC	4 cut(s)	208, 213, 376, 549
MboII	GAAGA	9 cut(s)	72, 75, 289, 371, 661, 722, 835, 838, 841
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	4 cut(s)	243, 297, 340, 528
MluCI	AATT	3 cut(s)	453, 635, 914
MlyI	GAGTC	2 cut(s)	676, 998
Mph1103I	ATGCAT	1 cut(s)	389
MroXI	GAANNNNTTC	1 cut(s)	836
MslI	CAYNNNNRTG	1 cut(s)	584
MspI	CCGG	4 cut(s)	194, 269, 409, 623
MspR9I	CCNGG	4 cut(s)	194, 410, 449, 611
MvaI	CCWGG	2 cut(s)	449, 611
MvnI	CGCG	2 cut(s)	546, 641
MwoI	GCNNNNNNNGC	6 cut(s)	251, 260, 309, 458, 467, 543
NciI	CCSGG	2 cut(s)	194, 410
NdeII	GATC	4 cut(s)	208, 213, 376, 549
NlaIII	CATG	5 cut(s)	229, 277, 387, 391, 589
NlaIV	GGNNCC	5 cut(s)	203, 253, 413, 577, 951
NsiI	ATGCAT	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	836
PfeI	GAWTC	1 cut(s)	221
PinAI	ACCGGT	1 cut(s)	268
PkrI	GCNGC	6 cut(s)	286, 305, 319, 358, 592, 891
PleI	GAGTC	2 cut(s)	675, 998
PpsI	GAGTC	2 cut(s)	675, 998
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	447, 609
PspGI	CCWGG	2 cut(s)	447, 609
PspN4I	GGNNCC	5 cut(s)	203, 253, 413, 577, 951
PspPI	GGNCC	3 cut(s)	412, 576, 620
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	2 cut(s)	203, 351
RsaNI	GTAC	2 cut(s)	202, 350
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	297
SapI	GCTCTTC	1 cut(s)	302
SatI	GCNGC	6 cut(s)	285, 304, 318, 357, 591, 890
Sau3AI	GATC	4 cut(s)	208, 213, 376, 549
Sau96I	GGNCC	3 cut(s)	412, 576, 620
SchI	GAGTC	2 cut(s)	676, 998
ScrFI	CCNGG	4 cut(s)	194, 410, 449, 611
SduI	GDGCHC	4 cut(s)	243, 297, 340, 528
SfaNI	GCATC	4 cut(s)	62, 457, 616, 931
SinI	GGWCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	1006
SmoI	CTYRAG	1 cut(s)	1006
Sse9I	AATT	3 cut(s)	453, 635, 914
SsiI	CCGC	6 cut(s)	303, 310, 565, 590, 618, 820
SspMI	CTAG	3 cut(s)	314, 458, 698
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	4 cut(s)	192, 408, 447, 609
TaaI	ACNGT	3 cut(s)	433, 571, 997
TaqI	TCGA	5 cut(s)	119, 129, 422, 606, 633
TasI	AATT	3 cut(s)	453, 635, 914
TauI	GCSGC	2 cut(s)	306, 593
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	1 cut(s)	677
TseI	GCWGC	4 cut(s)	284, 317, 356, 889
TspDTI	ATGAA	3 cut(s)	75, 234, 812
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	836
XspI	CTAG	3 cut(s)	314, 458, 698
Zsp2I	ATGCAT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.