Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013148

Physical Location & Seq

Genomic Coordinates Reverse (-)

13868271 .. 13869911

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGTTCTCGGTGGTTTCGACTCCGGCGCAGTTCCACCTACCAAAGAAGCTTACGTTCCGGATTCGCTGCTGCGCGGCTTCTTCGGTTTCGACCCGATCAGAGTCGACCCGGTTCGATTTGAAAACGTACTGGACGACGCTGATCGCCGATATCAACAGCAAGCTTAACGAGGCGGTTCCGGTTCGGTACCCGGAGCTGATCTACGAGTCCATGCGCTATTCTGTTCTCGCCGACGGCGCCAAGAGGGCTTCTCCGGTCATGTGCGTCGCCGCCTGTGAGCTCTTCGGTGGTGACCGCCTCGCCGCCTTCCCAACGGCATGTGCTCTCGAAATGGTACATGCAGCTTCACTCATACACGATGATCTTCCCTGCATGGATGACGACTCGTCTCGTCGAGGGCAGCCTTCCAATCACACAGTCTACGGCGAAGACATGGCGATTCTTGCCGGCGATGCTCTGTTTCCTTTGGGATTTCAGCATATTGTGTCGAACACGCCTTCAAATCTTGTGCCAGAGGCTCGACTTCTGCGTGTGATCACAGAGATTGCGAGGACTGTTGGGTCCACCGGCATGGCGGCTGGTCAGTTCCTTGATCTGGAAGGTGGGCCTAATGCGGTTGAGTTTGTGCAAGAGAAGAAGTTTGGGGAAATGGGTGAGTGTTCTGCTGTCTGTGGAGGACTGCTGGCTGGTGCCGAAGATGAGGAGGTAGATAGACTGAGGAGGTATGGGAGAGCTGTTGGGGTTTTGTATCAAGTGGTTGATGATATTCTTGAGGAGAAGAAGAATGGTAAGGATGAGAATGAGAAGAAGGAGAAGAAAGGGAAGAGCTATGTGAAAGTTTATGGGGTTGAGAAGGCTATGGAGGTAGCAGAGAGGCTTAGAGCTCAAGCTAAGCAGGAATTAGATGGGTTTGAGAAGTATGGTGATGGTGTGGTGCCACTTCATAGCTTTGTGGATTATGCTGTTGATCGAAGTTTTACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034357 GO:0042214 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

330

Amino Acids

36.11

Weight (kDa)

5.34

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	66 - 285	8.7e-35	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38460
fragaria_vesca	FvH4_2g15810
malus_domestica	MD05G1127100.v1.1 MD12G1092700.v1.1
prunus_persica	Prupe.8G170800_v2.0.a1
pyrus_communis	pycom05g12290 pycom10g11180
rosa_chinensis	RchiOBHm_Chr6g0279181
rosa_laevigata	RLG00000013157
rosa_multiflora	Rmu_sc0014203.1_g000011 Rmu_sc0014536.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189050
rosa_rugosa	Rorug06G0123500
rosa_samantha	Rh6AG231800 Rh6BG236700 Rh6CG238600 Rh6DG230200
rosa_wichuraiana	Rw6G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	562
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	4 cut(s)	189, 239, 692, 937
AccI	GTMKAC	2 cut(s)	107, 423
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	7 cut(s)	77, 176, 273, 298, 306, 578, 617
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	3 cut(s)	131, 191, 339
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	2 cut(s)	124, 504
AhdI	GACNNNNNGTC	1 cut(s)	388
Alw21I	GWGCWC	3 cut(s)	285, 328, 889
Alw26I	GTCTC	1 cut(s)	396
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	4 cut(s)	69, 72, 344, 403
Asp718I	GGTACC	1 cut(s)	189
AspLEI	GCGC	4 cut(s)	31, 77, 219, 242
AspS9I	GGNCC	2 cut(s)	564, 608
AsuC2I	CCSGG	2 cut(s)	112, 194
AsuHPI	GGTGA	3 cut(s)	305, 668, 938
AvaII	GGWCC	1 cut(s)	564
BanI	GGYRCC	4 cut(s)	189, 239, 692, 937
BanII	GRGCYC	2 cut(s)	285, 889
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	3 cut(s)	285, 328, 889
BbvI	GCAGC	4 cut(s)	56, 59, 356, 415
BccI	CCATC	2 cut(s)	902, 923
BceAI	ACGGC	3 cut(s)	253, 333, 442
BclI	TGATCA	1 cut(s)	537
BcnI	CCSGG	2 cut(s)	112, 194
BcoDI	GTCTC	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	243
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	8 cut(s)	70, 73, 78, 273, 306, 345, 404, 579
BlpI	GCTNAGC	1 cut(s)	894
BlsI	GCNGC	8 cut(s)	71, 74, 79, 274, 307, 346, 405, 580
Bme1390I	CCNGG	2 cut(s)	112, 194
Bme18I	GGWCC	1 cut(s)	564
BmeRI	GACNNNNNGTC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	564, 608
BmiI	GGNNCC	6 cut(s)	180, 191, 241, 565, 694, 939
BmrFI	CCNGG	2 cut(s)	112, 194
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bpu1102I	GCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	2 cut(s)	794, 873
BpuMI	CCSGG	2 cut(s)	112, 194
BsaHI	GRCGYC	1 cut(s)	240
BsaWI	WCCGGW	3 cut(s)	60, 181, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse118I	RCCGGY	2 cut(s)	449, 569
Bse1I	ACTGG	1 cut(s)	137
BseAI	TCCGGA	1 cut(s)	60
BseGI	GGATG	2 cut(s)	385, 802
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	710
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	3 cut(s)	719, 736, 791
BseXI	GCAGC	4 cut(s)	56, 59, 356, 415
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	610
BshNI	GGYRCC	4 cut(s)	189, 239, 692, 937
BsiHKAI	GWGCWC	3 cut(s)	285, 328, 889
BsiSI	CCGG	8 cut(s)	26, 61, 112, 182, 194, 257, 450, 570
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	610
Bsp1286I	GDGCHC	3 cut(s)	285, 328, 889
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	7 cut(s)	98, 144, 201, 364, 537, 595, 970
Bsp1720I	GCTNAGC	1 cut(s)	894
BspACI	CCGC	7 cut(s)	77, 176, 273, 298, 306, 578, 617
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	1 cut(s)	711
BspEI	TCCGGA	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	6 cut(s)	180, 191, 241, 565, 694, 939
BspQI	GCTCTTC	2 cut(s)	290, 821
BspT107I	GGYRCC	4 cut(s)	189, 239, 692, 937
BsrFI	RCCGGY	2 cut(s)	449, 569
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	2 cut(s)	449, 569
BssMI	GATC	7 cut(s)	98, 144, 201, 364, 537, 595, 970
BssNI	GRCGYC	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	421, 559
Bst6I	CTCTTC	2 cut(s)	290, 821
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	3 cut(s)	164, 451, 687
BstDEI	CTNAG	3 cut(s)	719, 881, 894
BstEII	GGTNACC	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	385, 802
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	4 cut(s)	31, 77, 219, 242
BstKTI	GATC	7 cut(s)	101, 147, 204, 367, 540, 598, 973
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	7 cut(s)	98, 144, 201, 364, 537, 595, 970
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 248, 446, 455
BstNSI	RCATGY	2 cut(s)	324, 344
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	110, 192
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	56, 59, 356, 415
BstV2I	GAAGAC	1 cut(s)	438
BstXI	CCANNNNNNTGG	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	610
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	385, 802
Cac8I	GCNNGC	3 cut(s)	164, 451, 687
CfoI	GCGC	4 cut(s)	31, 77, 219, 242
Cfr10I	RCCGGY	2 cut(s)	449, 569
Cfr13I	GGNCC	2 cut(s)	564, 608
CseI	GACGC	2 cut(s)	148, 256
Csp6I	GTAC	3 cut(s)	130, 190, 338
CviAII	CATG	7 cut(s)	214, 262, 321, 341, 376, 436, 574
CviQI	GTAC	3 cut(s)	130, 190, 338
DdeI	CTNAG	3 cut(s)	719, 881, 894
DinI	GGCGCC	1 cut(s)	241
DpnI	GATC	7 cut(s)	100, 146, 203, 366, 539, 597, 972
DpnII	GATC	7 cut(s)	98, 144, 201, 364, 537, 595, 970
DrdI	GACNNNNNNGTC	1 cut(s)	562
DriI	GACNNNNNGTC	1 cut(s)	388
DseDI	GACNNNNNNGTC	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	290, 821
Eam1105I	GACNNNNNGTC	1 cut(s)	388
EarI	CTCTTC	2 cut(s)	290, 821
Ecl136II	GAGCTC	2 cut(s)	283, 887
Eco24I	GRGCYC	2 cut(s)	285, 889
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	564
Eco53kI	GAGCTC	2 cut(s)	283, 887
Eco91I	GGTNACC	1 cut(s)	293
EcoICRI	GAGCTC	2 cut(s)	283, 887
EcoO65I	GGTNACC	1 cut(s)	293
EcoRV	GATATC	1 cut(s)	154
EcoT38I	GRGCYC	2 cut(s)	285, 889
EgeI	GGCGCC	1 cut(s)	241
EheI	GGCGCC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	7 cut(s)	217, 265, 324, 344, 379, 439, 577
FatI	CATG	7 cut(s)	213, 261, 320, 340, 375, 435, 573
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	2 cut(s)	107, 423
Fnu4HI	GCNGC	8 cut(s)	70, 73, 78, 273, 306, 345, 404, 579
FokI	GGATG	2 cut(s)	392, 809
FriOI	GRGCYC	2 cut(s)	285, 889
Fsp4HI	GCNGC	8 cut(s)	70, 73, 78, 273, 306, 345, 404, 579
GlaI	GCGC	4 cut(s)	30, 76, 218, 241
GluI	GCNGC	8 cut(s)	70, 73, 78, 273, 306, 345, 404, 579
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	8 cut(s)	26, 61, 112, 182, 194, 257, 450, 570
HgaI	GACGC	2 cut(s)	148, 256
HhaI	GCGC	4 cut(s)	31, 77, 219, 242
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	7 cut(s)	217, 265, 324, 344, 379, 439, 577
Hin6I	GCGC	4 cut(s)	29, 75, 217, 240
HinP1I	GCGC	4 cut(s)	29, 75, 217, 240
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	2 cut(s)	50, 164
HinfI	GANTC	6 cut(s)	22, 64, 104, 209, 386, 442
HpaII	CCGG	8 cut(s)	26, 61, 112, 182, 194, 257, 450, 570
HphI	GGTGA	3 cut(s)	305, 668, 938
Hpy166II	GTNNAC	3 cut(s)	108, 424, 567
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	4 cut(s)	61, 329, 599, 773
Hpy8I	GTNNAC	3 cut(s)	108, 424, 567
Hpy99I	CGWCG	4 cut(s)	142, 239, 272, 399
HpyAV	CCTTC	6 cut(s)	319, 417, 510, 596, 805, 850
HpyCH4III	ACNGT	2 cut(s)	421, 559
HpyCH4IV	ACGT	2 cut(s)	56, 128
HpyCH4V	TGCA	3 cut(s)	344, 375, 631
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 248, 446, 455
HpyF3I	CTNAG	3 cut(s)	719, 881, 894
HpySE526I	ACGT	2 cut(s)	56, 128
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	7 cut(s)	217, 265, 324, 344, 379, 439, 577
HspAI	GCGC	4 cut(s)	29, 75, 217, 240
KasI	GGCGCC	1 cut(s)	239
Kpn2I	TCCGGA	1 cut(s)	60
KpnI	GGTACC	1 cut(s)	193
KroI	GCCGGC	1 cut(s)	449
KroNI	GCCGGC	1 cut(s)	451
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	7 cut(s)	98, 144, 201, 364, 537, 595, 970
LguI	GCTCTTC	2 cut(s)	290, 821
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	4 cut(s)	56, 59, 356, 415
LweI	GCATC	1 cut(s)	445
MaeII	ACGT	2 cut(s)	56, 128
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	7 cut(s)	100, 146, 203, 366, 539, 597, 972
MboI	GATC	7 cut(s)	98, 144, 201, 364, 537, 595, 970
MhlI	GDGCHC	3 cut(s)	285, 328, 889
MluCI	AATT	1 cut(s)	902
Mly113I	GGCGCC	1 cut(s)	240
MlyI	GAGTC	4 cut(s)	16, 113, 218, 380
MroI	TCCGGA	1 cut(s)	60
MroNI	GCCGGC	1 cut(s)	449
MseI	TTAA	2 cut(s)	168, 988
MslI	CAYNNNNRTG	1 cut(s)	572
MspI	CCGG	8 cut(s)	26, 61, 112, 182, 194, 257, 450, 570
MspR9I	CCNGG	2 cut(s)	112, 194
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	239, 248, 446, 455
NaeI	GCCGGC	1 cut(s)	451
NarI	GGCGCC	1 cut(s)	240
NciI	CCSGG	2 cut(s)	112, 194
NdeII	GATC	7 cut(s)	98, 144, 201, 364, 537, 595, 970
NgoMIV	GCCGGC	1 cut(s)	449
NlaIII	CATG	7 cut(s)	217, 265, 324, 344, 379, 439, 577
NlaIV	GGNNCC	6 cut(s)	180, 191, 241, 565, 694, 939
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	2 cut(s)	324, 344
PciSI	GCTCTTC	2 cut(s)	290, 821
PcsI	WCGNNNNNNNCGW	3 cut(s)	17, 134, 529
PdiI	GCCGGC	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	64, 442
PkrI	GCNGC	8 cut(s)	71, 74, 79, 274, 307, 346, 405, 580
PleI	GAGTC	4 cut(s)	16, 112, 217, 380
PluTI	GGCGCC	1 cut(s)	243
PpsI	GAGTC	4 cut(s)	16, 112, 217, 380
Psp124BI	GAGCTC	2 cut(s)	285, 889
PspEI	GGTNACC	1 cut(s)	293
PspN4I	GGNNCC	6 cut(s)	180, 191, 241, 565, 694, 939
PspPI	GGNCC	2 cut(s)	564, 608
RsaI	GTAC	3 cut(s)	131, 191, 339
RsaNI	GTAC	3 cut(s)	130, 190, 338
RseI	CAYNNNNRTG	1 cut(s)	572
SacI	GAGCTC	2 cut(s)	285, 889
SalI	GTCGAC	1 cut(s)	106
SapI	GCTCTTC	2 cut(s)	290, 821
SaqAI	TTAA	2 cut(s)	168, 988
SatI	GCNGC	8 cut(s)	70, 73, 78, 273, 306, 345, 404, 579
Sau3AI	GATC	7 cut(s)	98, 144, 201, 364, 537, 595, 970
Sau96I	GGNCC	2 cut(s)	564, 608
SchI	GAGTC	4 cut(s)	16, 113, 218, 380
ScrFI	CCNGG	2 cut(s)	112, 194
SduI	GDGCHC	3 cut(s)	285, 328, 889
SfaNI	GCATC	1 cut(s)	445
SfoI	GGCGCC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	2 cut(s)	773, 888
SmoI	CTYRAG	2 cut(s)	773, 888
Sse9I	AATT	1 cut(s)	902
SsiI	CCGC	7 cut(s)	77, 176, 273, 298, 306, 578, 617
SspDI	GGCGCC	1 cut(s)	239
SstI	GAGCTC	2 cut(s)	285, 889
StyD4I	CCNGG	2 cut(s)	110, 192
TaaI	ACNGT	2 cut(s)	421, 559
TaiI	ACGT	2 cut(s)	59, 131
TaqI	TCGA	9 cut(s)	20, 92, 107, 117, 330, 397, 491, 523, 973
TasI	AATT	1 cut(s)	902
TauI	GCSGC	4 cut(s)	80, 275, 308, 581
TfiI	GAWTC	2 cut(s)	64, 442
Tru1I	TTAA	2 cut(s)	168, 988
Tru9I	TTAA	2 cut(s)	168, 988
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	4 cut(s)	69, 72, 344, 403
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	935
VpaK11BI	GGWCC	1 cut(s)	564
XceI	RCATGY	2 cut(s)	324, 344
XmiI	GTMKAC	2 cut(s)	107, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.