Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014536.1

Orthogroup ID

OG0013148

Physical Location & Seq

Genomic Coordinates Forward (+)

18779 .. 20031

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014536.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggcgttctcagtggtttcgactccggcgcatttccacataccgaaaaagcttactttccgaattcggtgttgcgcggcttcatcggtttcgacccgatcaaagtcgacccggttcgatttgaaaacctactggacgacgctgatcgccgatatcaaccacaagcttaacgaggcggttccggttcggtatcctgagctgatctacgagtccatgcgctactctgttctcgccgacggcgccaagagggcttctccggtcatgtgcgtcgccgcctgtgagctcttcggcggtgaccgcctcgccgcgttccccaccgcctgtgctctcgaaatggtgcatgcagcttcactcatacacgatgatcttccttgcatggatgacgacccgtctcgtcgcgggcagccttctaaccacacagtctacggcgaagacatggcaattcttgctggtgatgctctgtttcctttaggatttcagcacattgtgtcaaacacgccttcagatcttgtgccggaggcccgacttctgcgtgtgatcacggagattgccagaactgttgggtccaccggcatggcggctggtcagttccttgacctggaaggagggcctaatgcggttgaatttgtgcaggagaagaagtttggggaaatgggtgagtgttctgctgtctgcggaggactgctagctggtgccgaagatgaggaggtagacagactgaggaggtacgggagagctgttggggttttgtaccaagtggttgatgatattcttgaagagaagaagaatggtaaggatgagaatgagaagaaggagaagaaagggaagagctatgtgaaagtttatggggttgaaaaggctattgaggtagcagagaagcttagatcccaagctaagcaggagttagatgggtttgagaagtatggtgatggtgtggtgccacttcatagctttgtggattatgcagttgatagaagttttagtctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034357 GO:0042214 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

329

Amino Acids

36.14

Weight (kDa)

5.59

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38460
fragaria_vesca	FvH4_2g15810
malus_domestica	MD05G1127100.v1.1 MD12G1092700.v1.1
prunus_persica	Prupe.8G170800_v2.0.a1
pyrus_communis	pycom05g12290 pycom10g11180
rosa_chinensis	RchiOBHm_Chr6g0279181
rosa_laevigata	RLG00000013157
rosa_multiflora	Rmu_sc0014203.1_g000011 Rmu_sc0014536.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189050
rosa_rugosa	Rorug06G0123500
rosa_samantha	Rh6AG231800 Rh6BG236700 Rh6CG238600 Rh6DG230200
rosa_wichuraiana	Rw6G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	239, 692, 937
AccI	GTMKAC	3 cut(s)	107, 423, 711
AccII	CGCG	3 cut(s)	77, 308, 399
AclWI	GGATC	1 cut(s)	879
AcsI	RAATTY	2 cut(s)	63, 623
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	487
AfaI	GTAC	2 cut(s)	728, 752
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	4 cut(s)	124, 623, 776, 854
AhdI	GACNNNNNGTC	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	597
Alw21I	GWGCWC	2 cut(s)	285, 328
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	879
AoxI	GGCC	2 cut(s)	519, 608
ApeKI	GCWGC	2 cut(s)	344, 403
ApoI	RAATTY	2 cut(s)	63, 623
AspLEI	GCGC	4 cut(s)	31, 77, 219, 242
AspS9I	GGNCC	3 cut(s)	520, 564, 608
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	4 cut(s)	305, 464, 668, 938
AsuNHI	GCTAGC	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	564
BanI	GGYRCC	3 cut(s)	239, 692, 937
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	285, 328
BbvI	GCAGC	2 cut(s)	356, 415
BccI	CCATC	2 cut(s)	902, 923
BceAI	ACGGC	2 cut(s)	253, 442
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	201
BclI	TGATCA	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	686
BfoI	RGCGCY	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
BlpI	GCTNAGC	1 cut(s)	894
BlsI	GCNGC	6 cut(s)	79, 274, 307, 346, 405, 580
Bme1390I	CCNGG	2 cut(s)	112, 599
Bme18I	GGWCC	1 cut(s)	564
BmeRI	GACNNNNNGTC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	520, 564, 608
BmiI	GGNNCC	5 cut(s)	180, 241, 565, 694, 939
BmrFI	CCNGG	2 cut(s)	112, 599
BmsI	GCATC	1 cut(s)	445
BmtI	GCTAGC	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	894
BpuMI	CCSGG	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	240
BsaWI	WCCGGW	2 cut(s)	181, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	599
BseGI	GGATG	2 cut(s)	385, 802
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	3 cut(s)	24, 186, 710
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	719, 736
BseXI	GCAGC	2 cut(s)	356, 415
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	3 cut(s)	77, 308, 399
BshFI	GGCC	2 cut(s)	521, 610
BshNI	GGYRCC	3 cut(s)	239, 692, 937
BsiHKAI	GWGCWC	2 cut(s)	285, 328
BsiSI	CCGG	6 cut(s)	26, 112, 182, 257, 515, 570
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	521, 610
Bsp1286I	GDGCHC	2 cut(s)	285, 328
Bsp143I	GATC	7 cut(s)	98, 144, 201, 364, 505, 537, 884
Bsp1720I	GCTNAGC	1 cut(s)	894
BspANI	GGCC	2 cut(s)	521, 610
BspCNI	CTCAG	3 cut(s)	23, 187, 711
BspFNI	CGCG	3 cut(s)	77, 308, 399
BspLI	GGNNCC	5 cut(s)	180, 241, 565, 694, 939
BspOI	GCTAGC	1 cut(s)	689
BspPI	GGATC	1 cut(s)	879
BspQI	GCTCTTC	2 cut(s)	290, 821
BspT107I	GGYRCC	3 cut(s)	239, 692, 937
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	569
BssMI	GATC	7 cut(s)	98, 144, 201, 364, 505, 537, 884
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	421, 559
Bst6I	CTCTTC	3 cut(s)	290, 771, 821
BstACI	GRCGYC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	342, 401, 687
BstDEI	CTNAG	5 cut(s)	10, 195, 719, 881, 894
BstEII	GGTNACC	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	385, 802
BstFNI	CGCG	3 cut(s)	77, 308, 399
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	4 cut(s)	31, 77, 219, 242
BstKTI	GATC	7 cut(s)	101, 147, 204, 367, 508, 540, 887
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	7 cut(s)	98, 144, 201, 364, 505, 537, 884
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 248, 297, 446, 455
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	344
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	110, 597
BstUI	CGCG	3 cut(s)	77, 308, 399
BstV1I	GCAGC	2 cut(s)	356, 415
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	505, 884
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	2 cut(s)	505, 884
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	521, 610
BtsCI	GGATG	2 cut(s)	385, 802
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	342, 401, 687
CfoI	GCGC	4 cut(s)	31, 77, 219, 242
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	3 cut(s)	520, 564, 608
CseI	GACGC	2 cut(s)	148, 256
Csp6I	GTAC	2 cut(s)	727, 751
CviAII	CATG	6 cut(s)	214, 262, 341, 376, 436, 574
CviQI	GTAC	2 cut(s)	727, 751
DdeI	CTNAG	5 cut(s)	10, 195, 719, 881, 894
DinI	GGCGCC	1 cut(s)	241
DpnI	GATC	7 cut(s)	100, 146, 203, 366, 507, 539, 886
DpnII	GATC	7 cut(s)	98, 144, 201, 364, 505, 537, 884
DraIII	CACNNNGTG	1 cut(s)	487
DriI	GACNNNNNGTC	1 cut(s)	388
Eam1104I	CTCTTC	3 cut(s)	290, 771, 821
Eam1105I	GACNNNNNGTC	1 cut(s)	388
EarI	CTCTTC	3 cut(s)	290, 771, 821
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	564
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	486
Eco91I	GGTNACC	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	241
EheI	GGCGCC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	6 cut(s)	217, 265, 344, 379, 439, 577
FatI	CATG	6 cut(s)	213, 261, 340, 375, 435, 573
FauI	CCCGC	1 cut(s)	392
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	3 cut(s)	107, 423, 711
Fnu4HI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
FokI	GGATG	2 cut(s)	392, 809
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
FspBI	CTAG	1 cut(s)	686
GlaI	GCGC	4 cut(s)	30, 76, 218, 241
GluI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	521, 610
HapII	CCGG	6 cut(s)	26, 112, 182, 257, 515, 570
HgaI	GACGC	2 cut(s)	148, 256
HhaI	GCGC	4 cut(s)	31, 77, 219, 242
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	217, 265, 344, 379, 439, 577
Hin6I	GCGC	4 cut(s)	29, 75, 217, 240
HinP1I	GCGC	4 cut(s)	29, 75, 217, 240
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	3 cut(s)	50, 164, 878
HinfI	GANTC	2 cut(s)	22, 209
HpaII	CCGG	6 cut(s)	26, 112, 182, 257, 515, 570
HphI	GGTGA	4 cut(s)	305, 464, 668, 938
Hpy166II	GTNNAC	4 cut(s)	108, 424, 567, 712
Hpy188I	TCNGA	2 cut(s)	62, 505
Hpy188III	TCNNGA	3 cut(s)	194, 329, 773
Hpy8I	GTNNAC	4 cut(s)	108, 424, 567, 712
Hpy99I	CGWCG	4 cut(s)	142, 239, 272, 399
HpyAV	CCTTC	4 cut(s)	417, 510, 596, 805
HpyCH4III	ACNGT	2 cut(s)	421, 559
HpyCH4V	TGCA	5 cut(s)	340, 344, 375, 631, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 248, 297, 446, 455
HpyF3I	CTNAG	5 cut(s)	10, 195, 719, 881, 894
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	6 cut(s)	217, 265, 344, 379, 439, 577
HspAI	GCGC	4 cut(s)	29, 75, 217, 240
KasI	GGCGCC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	7 cut(s)	98, 144, 201, 364, 505, 537, 884
LguI	GCTCTTC	2 cut(s)	290, 821
Lsp1109I	GCAGC	2 cut(s)	356, 415
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	7 cut(s)	100, 146, 203, 366, 507, 539, 886
MboI	GATC	7 cut(s)	98, 144, 201, 364, 505, 537, 884
MflI	RGATCY	2 cut(s)	505, 884
MhlI	GDGCHC	2 cut(s)	285, 328
MluCI	AATT	3 cut(s)	63, 441, 623
Mly113I	GGCGCC	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	16, 218
MseI	TTAA	2 cut(s)	168, 988
MslI	CAYNNNNRTG	1 cut(s)	572
MspI	CCGG	6 cut(s)	26, 112, 182, 257, 515, 570
MspR9I	CCNGG	2 cut(s)	112, 599
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	3 cut(s)	77, 308, 399
MwoI	GCNNNNNNNGC	5 cut(s)	239, 248, 297, 446, 455
NarI	GGCGCC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	7 cut(s)	98, 144, 201, 364, 505, 537, 884
NheI	GCTAGC	1 cut(s)	685
NlaIII	CATG	6 cut(s)	217, 265, 344, 379, 439, 577
NlaIV	GGNNCC	5 cut(s)	180, 241, 565, 694, 939
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	344
PciSI	GCTCTTC	2 cut(s)	290, 821
PkrI	GCNGC	6 cut(s)	79, 274, 307, 346, 405, 580
PleI	GAGTC	2 cut(s)	16, 217
PluTI	GGCGCC	1 cut(s)	243
PpsI	GAGTC	2 cut(s)	16, 217
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	597
PspEI	GGTNACC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	5 cut(s)	180, 241, 565, 694, 939
PspPI	GGNCC	3 cut(s)	520, 564, 608
PsuI	RGATCY	2 cut(s)	505, 884
RsaI	GTAC	2 cut(s)	728, 752
RsaNI	GTAC	2 cut(s)	727, 751
RseI	CAYNNNNRTG	1 cut(s)	572
SacI	GAGCTC	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	106
SapI	GCTCTTC	2 cut(s)	290, 821
SaqAI	TTAA	2 cut(s)	168, 988
SatI	GCNGC	6 cut(s)	78, 273, 306, 345, 404, 579
Sau3AI	GATC	7 cut(s)	98, 144, 201, 364, 505, 537, 884
Sau96I	GGNCC	3 cut(s)	520, 564, 608
SchI	GAGTC	2 cut(s)	16, 218
ScrFI	CCNGG	2 cut(s)	112, 599
SduI	GDGCHC	2 cut(s)	285, 328
SfaNI	GCATC	1 cut(s)	445
SfoI	GGCGCC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	572
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	3 cut(s)	63, 441, 623
SspDI	GGCGCC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	686
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	110, 597
TaaI	ACNGT	2 cut(s)	421, 559
TaqI	TCGA	5 cut(s)	20, 92, 107, 117, 330
TasI	AATT	3 cut(s)	63, 441, 623
TauI	GCSGC	4 cut(s)	80, 275, 308, 581
Tru1I	TTAA	2 cut(s)	168, 988
Tru9I	TTAA	2 cut(s)	168, 988
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	344, 403
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	2 cut(s)	72, 935
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	564
XapI	RAATTY	2 cut(s)	63, 623
XceI	RCATGY	1 cut(s)	344
XmiI	GTMKAC	3 cut(s)	107, 423, 711
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.