AT4G38710

Plant specific eukaryotic initiation factor 4B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009133
Physical Location & Seq
Reverse (-)
18077790 .. 18080228
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38710.2

Sequence Viewer

Length: 1359 bp
ATGGCGGCTGCTGTATCATCTGTTTGGGCAAAGCCTGGTGCTTGGGCTCTTGAAGCCGAGGAACATGAAGCTGAGCTCAAACAACAACCCTCTCCCACCAACCAGAAATCCTCTGCCGAAGATTCCTCCGATTTCCCTTCCTTAGCCGCTGCAGCGACCACCAAAACGAAGAAGAAGAAGGGCCAAACCATCTCTCTTGCTGAATTCGCTACCTACGGTACTGCTAAGGCAAAGCCGGCTCCACAGACGGAGCGTCTCACTCAGGCTGAGCTGGTCGCTCTTCCGACCGGTCCACGTGAACGCTCTGCTGAGGAGCTTGATAGATCTAAGCTTGGAGGTGGTTTCCGGAGCTATGGTGGTGGTCGTTATGGAGATGAGTCGTCCAGCTCGAGGTGGGGTTCGTCTAGGGTTTCGGAGGATGGGGAAAGGAGAGGCGGTGGATTCAACCGGGATAGGGAACCTAGCAGGGATTCGGGTCCGTCGCGTGCGGATGAGGATGATAACTGGGCCGCCGCCAAGAAACCAATTAGCGGAAACGGATTCGAGAGAAGAGAGAGAGGCAGCGGCGGAGGATTCTTCGAATCTCAGTCTCAGTCCAAGGCTGATGAAGTCGATAGCTGGGTCTCCACTAAGCCATCGGAGCCCCGGAGATTCGTTTCTAGCAACGGCGGCGGCGGTGACAGATTTGAGAAAAGGGGAAGTTTTGAATCCTTGTCTAGAAACCGGGATTCTCAATACGGTGGTGGTGGTGGTTCTGAATCGGATACCTGGGGAAGAAGAAGAGAAGAAAGCGGTGCTGCTAATGGCTCGCCACCACCGAGCGGTGGTTCACGCCCAAGATTGGTGTTACAGCCACGTACACTTCCCGTGGCCGTTGTGGAGGTCGTGAAGCCGGAGAGTCCGGTCTTGGTCATTGTGGAGAAACCTAAAGGTGCTAATCCTTTTGGGAACGCAAGACCTAGAGAGGAAGTTCTGGCTGAGAAAGGCCAGGATTGGAAAGAGATTGACGAGAAGCTCGAGGCTGAAAAGCTTAAGGACATTGCTGCAGCCATGGAGAAGCCTAATGAGAAATCTACAGGGAAGATGGGCTTTGGTCTTGGCAATGGCCGTAAAGACGAGGAACGTATTGAAAGAAGTTGGAGGAAAAGCACGGAGCATTCTGAGGAGGATGCTCAAGAGGAGGAACCAGCTGTAGAAGGGGCAAAGAAGGAAGAGACTGAGGACAAACCGGCTGTAGAAGAGGCTAAGAAGGAAGAAACTGAGGGTGAACAGGCTGTAGAAGAGGCTAAGAAGGAAGAGACTGGTGGCGAACCGGCTGTAGAAGAGGCAAAGAAGGAAGAGACGGAGGACAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
eIF-4B

Protein Analysis

452

Amino Acids

48.99

Weight (kDa)

5.1

Isoelectric Point (pI)

63.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-4B PF06273 6 - 350 1.3e-51 Plant specific eukaryotic initiation factor 4B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 822
AccII CGCG 1 cut(s) 484
AccIII TCCGGA 1 cut(s) 345
AcoI YGGCCR 2 cut(s) 870, 1105
AcsI RAATTY 1 cut(s) 203
AcvI CACGTG 1 cut(s) 296
AfaI GTAC 2 cut(s) 220, 859
AfiI CCNNNNNNNGG 6 cut(s) 390, 454, 530, 821, 824, 841
AflII CTTAAG 1 cut(s) 1031
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 4 cut(s) 53, 445, 707, 1130
AhdI GACNNNNNGTC 1 cut(s) 252
AjnI CCWGG 3 cut(s) 34, 767, 987
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 6 cut(s) 260, 594, 628, 1208, 1292, 1334
Ama87I CYCGRG 2 cut(s) 388, 1016
Aor13HI TCCGGA 1 cut(s) 345
AoxI GGCC 5 cut(s) 181, 507, 870, 985, 1105
ApeKI GCWGC 7 cut(s) 8, 149, 152, 561, 797, 1043, 1046
ApoI RAATTY 1 cut(s) 203
AsiGI ACCGGT 1 cut(s) 287
AspS9I GGNCC 4 cut(s) 181, 290, 476, 507
AsuC2I CCSGG 3 cut(s) 449, 646, 725
AsuHPI GGTGA 2 cut(s) 689, 1277
AsuII TTCGAA 1 cut(s) 579
AvaI CYCGRG 2 cut(s) 388, 1016
AvaII GGWCC 2 cut(s) 290, 476
BanII GRGCYC 3 cut(s) 49, 78, 645
BbrPI CACGTG 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 6 cut(s) 136, 164, 573, 784, 1030, 1058
BccI CCATC 4 cut(s) 197, 413, 643, 1078
BceAI ACGGC 3 cut(s) 682, 857, 1092
BciT130I CCWGG 3 cut(s) 36, 769, 989
BciVI GTATCC 1 cut(s) 757
BcnI CCSGG 3 cut(s) 449, 646, 725
BcoDI GTCTC 6 cut(s) 260, 594, 628, 1208, 1292, 1334
BfaI CTAG 5 cut(s) 405, 462, 660, 717, 960
BfmI CTRYAG 7 cut(s) 150, 1044, 1074, 1191, 1233, 1275, 1317
BfrI CTTAAG 1 cut(s) 1031
BfuI GTATCC 1 cut(s) 757
BglII AGATCT 1 cut(s) 323
BlpI GCTNAGC 2 cut(s) 72, 267
Bme1390I CCNGG 6 cut(s) 36, 449, 646, 725, 769, 989
Bme18I GGWCC 2 cut(s) 290, 476
BmeRI GACNNNNNGTC 1 cut(s) 252
BmeT110I CYCGRG 2 cut(s) 388, 1016
BmgT120I GGNCC 4 cut(s) 181, 290, 476, 507
BmiI GGNNCC 5 cut(s) 240, 459, 477, 642, 1185
BmrFI CCNGG 6 cut(s) 36, 449, 646, 725, 769, 989
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 1 cut(s) 1159
BmuI ACTGGG 1 cut(s) 514
Bpu10I CCTNAGC 3 cut(s) 142, 225, 309
Bpu1102I GCTNAGC 2 cut(s) 72, 267
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 1158
BpuMI CCSGG 3 cut(s) 449, 646, 725
BsaAI YACGTR 2 cut(s) 296, 857
BsaI GGTCTC 1 cut(s) 628
BsaJI CCNNGG 6 cut(s) 57, 597, 644, 768, 867, 1050
BsaWI WCCGGW 3 cut(s) 287, 345, 901
BsaXI ACNNNNNCTCC 4 cut(s) 340, 370, 421, 451
Bsc4I CCNNNNNNNGG 6 cut(s) 390, 454, 530, 821, 824, 841
Bse118I RCCGGY 4 cut(s) 235, 287, 1228, 1312
Bse1I ACTGG 2 cut(s) 509, 1306
Bse3DI GCAATG 2 cut(s) 1038, 1108
BseAI TCCGGA 1 cut(s) 345
BseBI CCWGG 3 cut(s) 36, 769, 989
BseDI CCNNGG 6 cut(s) 57, 597, 644, 768, 867, 1050
BseGI GGATG 4 cut(s) 424, 496, 502, 1174
BseLI CCNNNNNNNGG 6 cut(s) 390, 454, 530, 821, 824, 841
BseMI GCAATG 2 cut(s) 1038, 1108
BseNI ACTGG 2 cut(s) 509, 1306
BseRI GAGGAG 3 cut(s) 326, 1178, 1193
BseXI GCAGC 6 cut(s) 136, 164, 573, 784, 1030, 1058
BseYI CCCAGC 1 cut(s) 618
Bsh1236I CGCG 1 cut(s) 484
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 5 cut(s) 183, 509, 872, 987, 1107
BshTI ACCGGT 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 2 cut(s) 388, 1016
BslI CCNNNNNNNGG 6 cut(s) 390, 454, 530, 821, 824, 841
BsmAI GTCTC 6 cut(s) 260, 594, 628, 1208, 1292, 1334
BsmBI CGTCTC 2 cut(s) 260, 1334
BsmI GAATGC 1 cut(s) 1156
BsnI GGCC 5 cut(s) 183, 509, 872, 987, 1107
Bso31I GGTCTC 1 cut(s) 628
BsoBI CYCGRG 2 cut(s) 388, 1016
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 3 cut(s) 49, 78, 645
Bsp13I TCCGGA 1 cut(s) 345
Bsp143I GATC 1 cut(s) 323
Bsp1720I GCTNAGC 2 cut(s) 72, 267
Bsp19I CCATGG 1 cut(s) 1050
BspANI GGCC 5 cut(s) 183, 509, 872, 987, 1107
BspEI TCCGGA 1 cut(s) 345
BspFNI CGCG 1 cut(s) 484
BspLI GGNNCC 5 cut(s) 240, 459, 477, 642, 1185
BspMAI CTGCAG 2 cut(s) 154, 1048
BspQI GCTCTTC 1 cut(s) 285
BspT104I TTCGAA 1 cut(s) 579
BspTI CTTAAG 1 cut(s) 1031
BspTNI GGTCTC 1 cut(s) 628
BsrBI CCGCTC 1 cut(s) 822
BsrDI GCAATG 2 cut(s) 1038, 1108
BsrFI RCCGGY 4 cut(s) 235, 287, 1228, 1312
BsrI ACTGG 2 cut(s) 509, 1306
BssAI RCCGGY 4 cut(s) 235, 287, 1228, 1312
BssECI CCNNGG 6 cut(s) 57, 597, 644, 768, 867, 1050
BssMI GATC 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 597, 1050
Bst2UI CCWGG 3 cut(s) 36, 769, 989
Bst4CI ACNGT 2 cut(s) 218, 740
Bst6I CTCTTC 9 cut(s) 285, 544, 775, 1206, 1233, 1275, 1290, 1317, 1332
BstAFI CTTAAG 1 cut(s) 1031
BstBAI YACGTR 2 cut(s) 296, 857
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 237, 486, 809
BstDSI CCRYGG 2 cut(s) 867, 1050
BstF5I GGATG 4 cut(s) 424, 496, 502, 1174
BstFNI CGCG 1 cut(s) 484
BstKTI GATC 1 cut(s) 326
BstMAI GTCTC 6 cut(s) 260, 594, 628, 1208, 1292, 1334
BstMBI GATC 1 cut(s) 323
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 6 cut(s) 53, 152, 206, 236, 640, 669
BstNI CCWGG 3 cut(s) 36, 769, 989
BstSCI CCNGG 6 cut(s) 34, 447, 644, 723, 767, 987
BstSFI CTRYAG 7 cut(s) 150, 1044, 1074, 1191, 1233, 1275, 1317
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 6 cut(s) 136, 164, 573, 784, 1030, 1058
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 5 cut(s) 183, 509, 872, 987, 1107
BtgI CCRYGG 2 cut(s) 867, 1050
BtsCI GGATG 4 cut(s) 424, 496, 502, 1174
Cac8I GCNNGC 3 cut(s) 237, 486, 809
Cfr10I RCCGGY 4 cut(s) 235, 287, 1228, 1312
Cfr13I GGNCC 4 cut(s) 181, 290, 476, 507
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 219, 858
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 2 cut(s) 65, 1051
CviQI GTAC 2 cut(s) 219, 858
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
DriI GACNNNNNGTC 1 cut(s) 252
EaeI YGGCCR 2 cut(s) 870, 1105
Eam1104I CTCTTC 9 cut(s) 285, 544, 775, 1206, 1233, 1275, 1290, 1317, 1332
Eam1105I GACNNNNNGTC 1 cut(s) 252
EarI CTCTTC 9 cut(s) 285, 544, 775, 1206, 1233, 1275, 1290, 1317, 1332
EciI GGCGGA 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 597, 1050
Eco24I GRGCYC 3 cut(s) 49, 78, 645
Eco31I GGTCTC 1 cut(s) 628
Eco47I GGWCC 2 cut(s) 290, 476
Eco53kI GAGCTC 1 cut(s) 76
Eco72I CACGTG 1 cut(s) 296
Eco88I CYCGRG 2 cut(s) 388, 1016
EcoICRI GAGCTC 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 3 cut(s) 34, 767, 987
EcoT14I CCWWGG 2 cut(s) 597, 1050
EcoT38I GRGCYC 3 cut(s) 49, 78, 645
ErhI CCWWGG 2 cut(s) 597, 1050
Esp3I CGTCTC 2 cut(s) 260, 1334
FaeI CATG 2 cut(s) 68, 1054
FaiI YATR 4 cut(s) 66, 354, 369, 1052
FalI AAGNNNNNCTT 2 cut(s) 1073, 1105
FatI CATG 2 cut(s) 64, 1050
FokI GGATG 4 cut(s) 431, 503, 509, 1181
FriOI GRGCYC 3 cut(s) 49, 78, 645
FspBI CTAG 5 cut(s) 405, 462, 660, 717, 960
GsaI CCCAGC 1 cut(s) 622
HaeIII GGCC 5 cut(s) 183, 509, 872, 987, 1107
HgaI GACGC 1 cut(s) 242
Hin1II CATG 2 cut(s) 68, 1054
HindIII AAGCTT 2 cut(s) 329, 1028
HphI GGTGA 2 cut(s) 689, 1277
Hpy166II GTNNAC 5 cut(s) 293, 299, 830, 860, 1268
Hpy188I TCNGA 7 cut(s) 130, 285, 415, 640, 757, 763, 1162
Hpy188III TCNNGA 6 cut(s) 50, 346, 544, 717, 886, 1175
Hpy8I GTNNAC 5 cut(s) 293, 299, 830, 860, 1268
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 7 cut(s) 147, 172, 1190, 1201, 1243, 1285, 1327
HpyCH4III ACNGT 2 cut(s) 218, 740
HpyCH4IV ACGT 3 cut(s) 295, 856, 1123
HpyCH4V TGCA 2 cut(s) 152, 1046
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 152, 206, 236, 640, 669
HpySE526I ACGT 3 cut(s) 295, 856, 1123
Hsp92II CATG 2 cut(s) 68, 1054
Kpn2I TCCGGA 1 cut(s) 345
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 323
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 6 cut(s) 244, 250, 313, 348, 640, 1153
Lsp1109I GCAGC 6 cut(s) 136, 164, 573, 784, 1030, 1058
LweI GCATC 1 cut(s) 1159
MaeI CTAG 5 cut(s) 405, 462, 660, 717, 960
MaeII ACGT 3 cut(s) 295, 856, 1123
MaeIII GTNAC 2 cut(s) 677, 846
MalI GATC 1 cut(s) 325
MbiI CCGCTC 1 cut(s) 822
MboI GATC 1 cut(s) 323
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 3 cut(s) 49, 78, 645
MluCI AATT 2 cut(s) 203, 525
MlyI GAGTC 2 cut(s) 386, 907
MmeI TCCRAC 2 cut(s) 308, 1118
MroI TCCGGA 1 cut(s) 345
MroNI GCCGGC 1 cut(s) 235
MseI TTAA 1 cut(s) 1032
MspA1I CMGCKG 3 cut(s) 149, 564, 1190
MspCI CTTAAG 1 cut(s) 1031
MspR9I CCNGG 6 cut(s) 36, 449, 646, 725, 769, 989
Mva1269I GAATGC 1 cut(s) 1156
MvaI CCWGG 3 cut(s) 36, 769, 989
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 6 cut(s) 53, 152, 206, 236, 640, 669
NaeI GCCGGC 1 cut(s) 237
NciI CCSGG 3 cut(s) 449, 646, 725
NcoI CCATGG 1 cut(s) 1050
NdeII GATC 1 cut(s) 323
NgoMIV GCCGGC 1 cut(s) 235
NlaIII CATG 2 cut(s) 68, 1054
NlaIV GGNNCC 5 cut(s) 240, 459, 477, 642, 1185
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 677
NspV TTCGAA 1 cut(s) 579
PaeR7I CTCGAG 2 cut(s) 388, 1016
PciSI GCTCTTC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 3 cut(s) 386, 815, 1014
PctI GAATGC 1 cut(s) 1156
PdiI GCCGGC 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 287
PleI GAGTC 2 cut(s) 385, 906
PmaCI CACGTG 1 cut(s) 296
PmlI CACGTG 1 cut(s) 296
PpsI GAGTC 2 cut(s) 385, 906
Ppu21I YACGTR 2 cut(s) 296, 857
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 3 cut(s) 34, 767, 987
PspCI CACGTG 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 618
PspGI CCWGG 3 cut(s) 34, 767, 987
PspN4I GGNNCC 5 cut(s) 240, 459, 477, 642, 1185
PspPI GGNCC 4 cut(s) 181, 290, 476, 507
PspXI VCTCGAGB 2 cut(s) 388, 1016
PstI CTGCAG 2 cut(s) 154, 1048
PsuI RGATCY 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 1190
RsaI GTAC 2 cut(s) 220, 859
RsaNI GTAC 2 cut(s) 219, 858
SacI GAGCTC 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 1032
Sau3AI GATC 1 cut(s) 323
Sau96I GGNCC 4 cut(s) 181, 290, 476, 507
SchI GAGTC 2 cut(s) 386, 907
ScrFI CCNGG 6 cut(s) 36, 449, 646, 725, 769, 989
SduI GDGCHC 3 cut(s) 49, 78, 645
SfaNI GCATC 1 cut(s) 1159
SfcI CTRYAG 7 cut(s) 150, 1044, 1074, 1191, 1233, 1275, 1317
Sfr274I CTCGAG 2 cut(s) 388, 1016
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 2 cut(s) 290, 476
SlaI CTCGAG 2 cut(s) 388, 1016
SmlI CTYRAG 4 cut(s) 388, 1016, 1031, 1173
SmoI CTYRAG 4 cut(s) 388, 1016, 1031, 1173
Sse9I AATT 2 cut(s) 203, 525
SspMI CTAG 5 cut(s) 405, 462, 660, 717, 960
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 6 cut(s) 34, 447, 644, 723, 767, 987
StyI CCWWGG 2 cut(s) 597, 1050
TaaI ACNGT 2 cut(s) 218, 740
TaiI ACGT 3 cut(s) 298, 859, 1126
TaqI TCGA 5 cut(s) 389, 543, 579, 612, 1017
TasI AATT 2 cut(s) 203, 525
TauI GCSGC 7 cut(s) 8, 149, 512, 515, 567, 672, 675
Tru1I TTAA 1 cut(s) 1032
Tru9I TTAA 1 cut(s) 1032
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 7 cut(s) 8, 149, 152, 561, 797, 1043, 1046
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 2 cut(s) 81, 621
TspGWI ACGGA 5 cut(s) 263, 468, 552, 1166, 1358
Vha464I CTTAAG 1 cut(s) 1031
VpaK11BI GGWCC 2 cut(s) 290, 476
XapI RAATTY 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 716
XhoI CTCGAG 2 cut(s) 388, 1016
XspI CTAG 5 cut(s) 405, 462, 660, 717, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.