Prupe.8G161300_v2.0.a1

Plant specific eukaryotic initiation factor 4B

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
16959344 .. 16961939
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G161300.1

Sequence Viewer

Length: 1239 bp
ATGGCGGCAACAGTGTCTCCTTGGGCCAAACCTGGCGCTTGGGCCCTCGCCGCCGAAGAGCAGGACGCCGAGCTCGAACAAGAAACCCAAAACGCACGACACGTCGTTGAGCCGCCCTCCGCCGACTACCCATCTTTGTCTGTAGCCGCCACCGCCAAGCCCAAGAAGAAGAACAAGGGCCAGAAAATCTCCCTCGCCGAGTTCACGGCCTTCGGCGCGCCCAAGCCCGTGGCCCAGCCCGAGGGCCTCACCCATCAGGACCGCATGCATCTCCCGACCGGTCCGCGCGAGCGAACCGCCGAGGAGCTCGACAGGAATCGGCTCGGCGGCGGGTTCAGGTCCTATGGGTCTGATCGGGGAAACAGCAGGTTTTCCAACGGCGAAGAGTCGTCGGATTCGAAGTGGGGTTCGGGACAGAGGAGGGAAGGTGGATTTGGGAAGGAATCGAACCGCGATGGGCCTTCCAGGGCCGACGAGATTGATGATTGGGGCGCTGCGAAGAAATCGACTGTGGGAAATGGGTTTGAGAGGAGGGAGAGAGGAGCAGGAGGTAGTTTCTTTGGTGGGTCACAGTCGAAGGCTGATGAATCGGACAGTTGGGTATCCAATAAGAGCTCTGTGTCGTCGGAGGGACGGAGATTCGGTGCTTCCGGTGGTGGGTTCGATCGGGAGAGGAAAGTGGGGTTCACATCTGATGGAGGTGCTGATTCTGATAATTGGGGGAGGAAGAAGGAGGAGAGTAATGGTGGGTCTGGTTTTGATCGAGAAAGAAGAGTTGGGTTCGTGTCCAATGGTGGTGGTGCTGATTCTGAGGTTTGGGGGAAGAAGAAGGAGGAGAGTAATGGTGGTCTGAGTGAGAGTACTGGAAGGCCGAGGCTCAATTTGCAGCCGAGGACACTGCCTGTGAGCAACGAGACCTCACCTGGGTCGACGACAGTACCGAAGTCCAAGGGCTCAAACCCGTTTGGTGAGGCGAGGCCAAGAGAGGAGGTGTTGGCAGAGAAGGGGAAGGACTGGAAAAAGATTGATGAGGAGCTCGAGTCGGTGAAGATTAAGGAGGTGGCTGAGAGAGACCACTCGCCCTCGTTTGGGAAGAGGAGTTTTGGGATAGGAAATGGGCGTGCCGGTGATCGAACTGAGAGAGCTTGGAGGAAGCCTGATGTGGCAGATGCTCGTCCCCAGAGTGCTGAGGAAAATGAGAGTAGGAGCAGTTCTTTGGAACCAGAGAATGTATGTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

44.44

Weight (kDa)

6.55

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 357
AccI GTMKAC 1 cut(s) 929
AccII CGCG 4 cut(s) 218, 286, 288, 453
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 862, 939
AfiI CCNNNNNNNGG 5 cut(s) 241, 657, 924, 1088, 1089
AflIII ACRYGT 1 cut(s) 100
AgeI ACCGGT 1 cut(s) 278
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 3 cut(s) 31, 464, 922
AjuI GAANNNNNNNTTGG 4 cut(s) 417, 449, 759, 791
AluBI AGCT 5 cut(s) 73, 307, 615, 1036, 1145
AluI AGCT 5 cut(s) 73, 307, 615, 1036, 1145
Alw21I GWGCWC 4 cut(s) 75, 309, 617, 1038
Alw26I GTCTC 3 cut(s) 21, 908, 1065
Ama87I CYCGRG 2 cut(s) 239, 1037
ApaI GGGCCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 494, 886
AscI GGCGCGCC 1 cut(s) 216
AsiGI ACCGGT 1 cut(s) 278
AspLEI GCGC 5 cut(s) 38, 218, 220, 288, 494
AsuHPI GGTGA 5 cut(s) 241, 912, 980, 1057, 1139
AsuII TTCGAA 1 cut(s) 398
AvaI CYCGRG 2 cut(s) 239, 1037
AvaII GGWCC 3 cut(s) 259, 281, 339
BaeGI GKGCMC 1 cut(s) 46
BaeI ACNNNNGTAYC 2 cut(s) 921, 954
BanII GRGCYC 6 cut(s) 46, 75, 309, 617, 956, 1038
Bbv12I GWGCWC 4 cut(s) 75, 309, 617, 1038
BbvCI CCTCAGC 1 cut(s) 1188
BbvI GCAGC 2 cut(s) 481, 898
BccI CCATC 4 cut(s) 139, 261, 449, 689
BceAI ACGGC 2 cut(s) 222, 394
BcgI CGANNNNNNTGC 2 cut(s) 880, 914
BciT130I CCWGG 3 cut(s) 33, 466, 924
BciVI GTATCC 1 cut(s) 613
BcoDI GTCTC 3 cut(s) 21, 908, 1065
BfmI CTRYAG 1 cut(s) 141
BfoI RGCGCY 2 cut(s) 39, 495
BfuAI ACCTGC 1 cut(s) 357
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 7 cut(s) 6, 51, 113, 147, 328, 495, 887
BlsI GCNGC 7 cut(s) 7, 52, 114, 148, 329, 496, 888
BmcAI AGTACT 1 cut(s) 862
Bme1390I CCNGG 3 cut(s) 33, 466, 924
Bme18I GGWCC 3 cut(s) 259, 281, 339
BmeT110I CYCGRG 2 cut(s) 239, 1037
BmgBI CACGTC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 44, 1221
BmrFI CCNGG 3 cut(s) 33, 466, 924
BmsI GCATC 2 cut(s) 277, 1159
BplI GAGNNNNNCTC 2 cut(s) 101, 133
Bpu10I CCTNAGC 1 cut(s) 1188
Bpu14I TTCGAA 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 2 cut(s) 908, 1065
BsaJI CCNNGG 9 cut(s) 20, 228, 240, 300, 465, 872, 890, 923, 948
BsaWI WCCGGW 2 cut(s) 278, 650
BsaXI ACNNNNNCTCC 7 cut(s) 31, 412, 442, 628, 658, 1025, 1055
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 657, 924, 1088, 1089
Bse118I RCCGGY 2 cut(s) 278, 1124
Bse1I ACTGG 2 cut(s) 868, 1019
BseBI CCWGG 3 cut(s) 33, 466, 924
BseDI CCNNGG 9 cut(s) 20, 228, 240, 300, 465, 872, 890, 923, 948
BseLI CCNNNNNNNGG 5 cut(s) 241, 657, 924, 1088, 1089
BseMII CTCAG 5 cut(s) 801, 842, 1056, 1128, 1179
BseNI ACTGG 2 cut(s) 868, 1019
BsePI GCGCGC 1 cut(s) 216
BseRI GAGGAG 9 cut(s) 317, 433, 544, 555, 749, 848, 1001, 1046, 1111
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 2 cut(s) 481, 898
BseYI CCCAGC 1 cut(s) 234
Bsh1236I CGCG 4 cut(s) 218, 286, 288, 453
Bsh1285I CGRYCG 2 cut(s) 279, 667
BshTI ACCGGT 1 cut(s) 278
BsiEI CGRYCG 2 cut(s) 279, 667
BsiHKAI GWGCWC 4 cut(s) 75, 309, 617, 1038
BsiHKCI CYCGRG 2 cut(s) 239, 1037
BsiSI CCGG 3 cut(s) 279, 651, 1125
BslFI GGGAC 3 cut(s) 426, 645, 1161
BslI CCNNNNNNNGG 5 cut(s) 241, 657, 924, 1088, 1089
BsmAI GTCTC 3 cut(s) 21, 908, 1065
BsmFI GGGAC 3 cut(s) 426, 645, 1161
Bso31I GGTCTC 2 cut(s) 908, 1065
BsoBI CYCGRG 2 cut(s) 239, 1037
Bsp119I TTCGAA 1 cut(s) 398
Bsp120I GGGCCC 1 cut(s) 42
Bsp1286I GDGCHC 6 cut(s) 46, 75, 309, 617, 956, 1038
Bsp143I GATC 4 cut(s) 352, 664, 760, 1129
BspCNI CTCAG 5 cut(s) 802, 843, 1057, 1129, 1180
BspFNI CGCG 4 cut(s) 218, 286, 288, 453
BspLI GGNNCC 2 cut(s) 44, 1221
BspMI ACCTGC 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 398
BspTNI GGTCTC 2 cut(s) 908, 1065
BsrFI RCCGGY 2 cut(s) 278, 1124
BsrI ACTGG 2 cut(s) 868, 1019
BssAI RCCGGY 2 cut(s) 278, 1124
BssECI CCNNGG 9 cut(s) 20, 228, 240, 300, 465, 872, 890, 923, 948
BssHII GCGCGC 1 cut(s) 216
BssMI GATC 4 cut(s) 352, 664, 760, 1129
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 2 cut(s) 20, 948
Bst2UI CCWGG 3 cut(s) 33, 466, 924
Bst4CI ACNGT 5 cut(s) 13, 511, 573, 596, 937
Bst6I CTCTTC 4 cut(s) 51, 378, 766, 1088
BstACI GRCGYC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 398
BstC8I GCNNGC 4 cut(s) 218, 266, 290, 1122
BstDEI CTNAG 5 cut(s) 810, 851, 1065, 1137, 1188
BstDSI CCRYGG 1 cut(s) 228
BstFNI CGCG 4 cut(s) 218, 286, 288, 453
BstH2I RGCGCY 2 cut(s) 39, 495
BstHHI GCGC 5 cut(s) 38, 218, 220, 288, 494
BstKTI GATC 4 cut(s) 355, 667, 763, 1132
BstMAI GTCTC 3 cut(s) 21, 908, 1065
BstMBI GATC 4 cut(s) 352, 664, 760, 1129
BstMCI CGRYCG 2 cut(s) 279, 667
BstMWI GCNNNNNNNGC 4 cut(s) 50, 152, 215, 883
BstNI CCWGG 3 cut(s) 33, 466, 924
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 3 cut(s) 31, 464, 922
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 46
BstUI CGCG 4 cut(s) 218, 286, 288, 453
BstV1I GCAGC 2 cut(s) 481, 898
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 613
BtgI CCRYGG 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 468
BtrI CACGTC 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 896
BtsIMutI CAGTG 2 cut(s) 18, 896
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 4 cut(s) 218, 266, 290, 1122
CfoI GCGC 5 cut(s) 38, 218, 220, 288, 494
Cfr10I RCCGGY 2 cut(s) 278, 1124
CpoI CGGWCCG 1 cut(s) 281
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 861, 938
CspAI ACCGGT 1 cut(s) 278
CspCI CAANNNNNGTGG 2 cut(s) 778, 813
CspI CGGWCCG 1 cut(s) 281
CviAII CATG 1 cut(s) 265
CviQI GTAC 2 cut(s) 861, 938
DdeI CTNAG 5 cut(s) 810, 851, 1065, 1137, 1188
DpnI GATC 4 cut(s) 354, 666, 762, 1131
DpnII GATC 4 cut(s) 352, 664, 760, 1129
Eam1104I CTCTTC 4 cut(s) 51, 378, 766, 1088
EarI CTCTTC 4 cut(s) 51, 378, 766, 1088
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 4 cut(s) 73, 307, 615, 1036
Eco130I CCWWGG 2 cut(s) 20, 948
Eco24I GRGCYC 6 cut(s) 46, 75, 309, 617, 956, 1038
Eco31I GGTCTC 2 cut(s) 908, 1065
Eco47I GGWCC 3 cut(s) 259, 281, 339
Eco53kI GAGCTC 4 cut(s) 73, 307, 615, 1036
Eco88I CYCGRG 2 cut(s) 239, 1037
EcoICRI GAGCTC 4 cut(s) 73, 307, 615, 1036
EcoO109I RGGNCCY 3 cut(s) 43, 244, 339
EcoRII CCWGG 3 cut(s) 31, 464, 922
EcoT14I CCWWGG 2 cut(s) 20, 948
EcoT22I ATGCAT 1 cut(s) 270
EcoT38I GRGCYC 6 cut(s) 46, 75, 309, 617, 956, 1038
ErhI CCWWGG 2 cut(s) 20, 948
FaeI CATG 1 cut(s) 268
FaiI YATR 3 cut(s) 266, 345, 1234
FaqI GGGAC 3 cut(s) 426, 645, 1161
FatI CATG 1 cut(s) 264
FauI CCCGC 1 cut(s) 323
FblI GTMKAC 1 cut(s) 929
Fnu4HI GCNGC 7 cut(s) 6, 51, 113, 147, 328, 495, 887
FriOI GRGCYC 6 cut(s) 46, 75, 309, 617, 956, 1038
Fsp4HI GCNGC 7 cut(s) 6, 51, 113, 147, 328, 495, 887
GlaI GCGC 5 cut(s) 37, 217, 219, 287, 493
GluI GCNGC 7 cut(s) 6, 51, 113, 147, 328, 495, 887
GsaI CCCAGC 1 cut(s) 238
HaeII RGCGCY 2 cut(s) 39, 495
HapII CCGG 3 cut(s) 279, 651, 1125
HgaI GACGC 1 cut(s) 74
HhaI GCGC 5 cut(s) 38, 218, 220, 288, 494
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 5 cut(s) 36, 216, 218, 286, 492
HinP1I GCGC 5 cut(s) 36, 216, 218, 286, 492
HincII GTYRAC 1 cut(s) 930
HindII GTYRAC 1 cut(s) 930
HinfI GANTC 9 cut(s) 316, 386, 395, 443, 587, 639, 707, 806, 1040
HpaII CCGG 3 cut(s) 279, 651, 1125
HphI GGTGA 5 cut(s) 241, 912, 980, 1057, 1139
Hpy166II GTNNAC 3 cut(s) 204, 687, 930
Hpy188I TCNGA 8 cut(s) 352, 394, 592, 628, 694, 712, 811, 852
Hpy188III TCNNGA 5 cut(s) 257, 274, 411, 668, 764
Hpy8I GTNNAC 3 cut(s) 204, 687, 930
Hpy99I CGWCG 5 cut(s) 107, 394, 476, 628, 934
HpyCH4III ACNGT 5 cut(s) 13, 511, 573, 596, 937
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 268, 886
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 152, 215, 883
HpyF3I CTNAG 5 cut(s) 810, 851, 1065, 1137, 1188
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 5 cut(s) 36, 216, 218, 286, 492
Kzo9I GATC 4 cut(s) 352, 664, 760, 1129
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 4 cut(s) 304, 542, 1033, 1206
Lsp1109I GCAGC 2 cut(s) 481, 898
LweI GCATC 2 cut(s) 277, 1159
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 567
MalI GATC 4 cut(s) 354, 666, 762, 1131
MboI GATC 4 cut(s) 352, 664, 760, 1129
MhlI GDGCHC 6 cut(s) 46, 75, 309, 617, 956, 1038
MluCI AATT 2 cut(s) 715, 880
MlyI GAGTC 2 cut(s) 395, 1049
MmeI TCCRAC 3 cut(s) 372, 399, 606
Mph1103I ATGCAT 1 cut(s) 270
MseI TTAA 1 cut(s) 1053
MspI CCGG 3 cut(s) 279, 651, 1125
MspR9I CCNGG 3 cut(s) 33, 466, 924
MvaI CCWGG 3 cut(s) 33, 466, 924
MvnI CGCG 4 cut(s) 218, 286, 288, 453
MwoI GCNNNNNNNGC 4 cut(s) 50, 152, 215, 883
NdeII GATC 4 cut(s) 352, 664, 760, 1129
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 44, 1221
NmeAIII GCCGAG 6 cut(s) 94, 223, 303, 325, 897, 915
NmuCI GTSAC 1 cut(s) 567
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 1 cut(s) 268
NspV TTCGAA 1 cut(s) 398
PaeI GCATGC 1 cut(s) 268
PaeR7I CTCGAG 1 cut(s) 1037
PalAI GGCGCGCC 1 cut(s) 216
PauI GCGCGC 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 4 cut(s) 72, 99, 395, 938
PfeI GAWTC 7 cut(s) 316, 395, 443, 587, 639, 707, 806
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 7 cut(s) 7, 52, 114, 148, 329, 496, 888
Ple19I CGATCG 1 cut(s) 667
PleI GAGTC 2 cut(s) 394, 1048
PpsI GAGTC 2 cut(s) 394, 1048
PpuMI RGGWCCY 1 cut(s) 339
Psp124BI GAGCTC 4 cut(s) 75, 309, 617, 1038
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 3 cut(s) 31, 464, 922
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 3 cut(s) 31, 464, 922
PspN4I GGNNCC 2 cut(s) 44, 1221
PspOMI GGGCCC 1 cut(s) 42
PspPPI RGGWCCY 1 cut(s) 339
PspXI VCTCGAGB 1 cut(s) 1037
PsrI GAACNNNNNNTAC 2 cut(s) 1195, 1227
PteI GCGCGC 1 cut(s) 216
PvuI CGATCG 1 cut(s) 667
RsaI GTAC 2 cut(s) 862, 939
RsaNI GTAC 2 cut(s) 861, 938
Rsr2I CGGWCCG 1 cut(s) 281
RsrII CGGWCCG 1 cut(s) 281
SacI GAGCTC 4 cut(s) 75, 309, 617, 1038
SalI GTCGAC 1 cut(s) 928
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 1053
SatI GCNGC 7 cut(s) 6, 51, 113, 147, 328, 495, 887
Sau3AI GATC 4 cut(s) 352, 664, 760, 1129
ScaI AGTACT 1 cut(s) 862
SchI GAGTC 2 cut(s) 395, 1049
ScrFI CCNGG 3 cut(s) 33, 466, 924
SduI GDGCHC 6 cut(s) 46, 75, 309, 617, 956, 1038
SfaNI GCATC 2 cut(s) 277, 1159
SfcI CTRYAG 1 cut(s) 141
Sfr274I CTCGAG 1 cut(s) 1037
SfuI TTCGAA 1 cut(s) 398
SgsI GGCGCGCC 1 cut(s) 216
SinI GGWCC 3 cut(s) 259, 281, 339
SlaI CTCGAG 1 cut(s) 1037
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
SphI GCATGC 1 cut(s) 268
Sse9I AATT 2 cut(s) 715, 880
SstI GAGCTC 4 cut(s) 75, 309, 617, 1038
StyD4I CCNGG 3 cut(s) 31, 464, 922
StyI CCWWGG 2 cut(s) 20, 948
TaaI ACNGT 5 cut(s) 13, 511, 573, 596, 937
TaiI ACGT 1 cut(s) 105
TasI AATT 2 cut(s) 715, 880
TatI WGTACW 1 cut(s) 860
TauI GCSGC 5 cut(s) 8, 53, 115, 149, 330
TfiI GAWTC 7 cut(s) 316, 395, 443, 587, 639, 707, 806
Tru1I TTAA 1 cut(s) 1053
Tru9I TTAA 1 cut(s) 1053
TscAI CASTG 2 cut(s) 18, 903
TseFI GTSAC 1 cut(s) 567
TseI GCWGC 2 cut(s) 494, 886
Tsp45I GTSAC 1 cut(s) 567
TspDTI ATGAA 1 cut(s) 600
TspGWI ACGGA 1 cut(s) 649
TspRI CASTG 2 cut(s) 18, 903
VpaK11BI GGWCC 3 cut(s) 259, 281, 339
XceI RCATGY 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 1037
XmiI GTMKAC 1 cut(s) 929
ZrmI AGTACT 1 cut(s) 862
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.