Rh6AG025800

Plant specific eukaryotic initiation factor 4B

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
3067123 .. 3069291
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG025800.1

Sequence Viewer

Length: 1299 bp
ATGGCGGCAACAGTGTCGTCTCCTTGGGCCAAGCCCGGCGCGTGGGCCCTCGACGCCGAAGAGCACGAAGCCGAGCTCGAACAACAACAACAACAGCAGGCCAAGATCGAAACGCAGCAGCCCCTCGCTGACTTCCCCTCTCTCTCCGCCGCCGCCGCGAAGCCGAAGAAGAAGAACAAGGGCCAGAAGGTCAGCCTCGCCGAGTTCACCACCTTCGGCGGGCCCAAACCCGCCGAGCCCGTGGGCCTGACCCACGAGGATCGGTTGGTTCTCCCGACCGGCCCGCGCGAGCGGACCGCCGAGGAGCTCGAACGGAACCGGCCCGGCGGCGGGTTCAAGAGCTACGGCGGCGATCGGGGGAACCGCGAGGATTTGAGTTCGAAGTGGGGGAATCAGAGGAGGGAAGGAGGAGGGTTCGGGGGGAAAGAAGGAGGGGAGAGAGATGGGCCGTCGCGGGCGGATGAGGCCGACGACTGGGGCGCCGGGAAGAAATCGGTGGCGGGGAATGGGTTTGAGAAGAGGGATAGAGGAGGGTTCTTTGGGTCTCAGTCGAAGGCGGATGAATCTGACAGCTGGGTCTCGAATAAGAGCTCGTTTTCGTCGGAGGGAAGGAGATACGGCGGCTCTGGCAGTGGGTTTGAGCGGGAGAGGAAGGTTGGGTTTGCATCGAATGGCGGCGGTGCTGATTCGGAGAGCTGGGGCAGGAAGAGGGAGGAGAGTAATGGTGGGGGTGGGTTTGAAAGGGAGAGGAAGGTAGGGTTAGGGTTCAATTCGAACGGTGGAGGTGCGGATTCGGAGAGTTGGGGAAGGAGGAGGGAGGAGAGTAATGGTGGGATGGAGAGTACTGGGAGGCCGAGGCTCAATTTGCAGCCGAGGACATTGCCTGTTACTCTGCCTGTTGTGAGCAATGAAACCTCTCCGGTGGCGGTGCCTGTGGATGTGGCGGCAGCACCAAGGCCCAGGGGTTCAAACCCGTTTGGGGCGGCGAGGCCGAGAGAGGAGGTTTTGGCAGAGAAAGGGCAGGATTGGAAGAAGATTGACGAGCAGCTTGAGTCTGTGAAACTTAAGGAGAAGGAGGCTGTGGCTGCCGAAGGGGAGTCTTTTGGGAAGAGGAGTTTCGGCATGGGAAATGGGCGCTCTGGTGACCGCACTGTGGGAGCTTGGAGGAAACCTGTTGTGGCTGAGGCGGAGGCTGAGGCTGAGGCTGAGGCTCGTCCTCAGAGTGCTGGAAACGATGAGAGTAGGAGCAGCAATTCTGAGGAACCAGAACCGGAGAATGAGAATGTCAATGAGAACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

432

Amino Acids

46.25

Weight (kDa)

5.39

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-4B PF06273 6 - 214 1.7e-36 Plant specific eukaryotic initiation factor 4B
eIF-4B PF06273 182 - 355 3.5e-17 Plant specific eukaryotic initiation factor 4B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 575
AccB1I GGYRCC 2 cut(s) 479, 928
AccBSI CCGCTC 2 cut(s) 292, 643
AccII CGCG 6 cut(s) 41, 158, 286, 288, 366, 454
AclWI GGATC 1 cut(s) 267
AcyI GRCGYC 2 cut(s) 54, 480
AfaI GTAC 1 cut(s) 844
AfiI CCNNNNNNNGG 7 cut(s) 42, 219, 329, 330, 474, 979, 1153
AflII CTTAAG 1 cut(s) 1064
AgsI TTSAA 4 cut(s) 337, 740, 769, 969
AjnI CCWGG 1 cut(s) 959
AluBI AGCT 8 cut(s) 76, 307, 342, 573, 591, 696, 1048, 1160
AluI AGCT 8 cut(s) 76, 307, 342, 573, 591, 696, 1048, 1160
Alw21I GWGCWC 4 cut(s) 66, 78, 309, 593
Alw26I GTCTC 3 cut(s) 24, 549, 583
AlwI GGATC 1 cut(s) 267
ApaI GGGCCC 2 cut(s) 49, 225
ApeKI GCWGC 7 cut(s) 115, 118, 868, 947, 1045, 1085, 1248
AspLEI GCGC 4 cut(s) 41, 288, 482, 1137
AsuC2I CCSGG 3 cut(s) 36, 324, 484
AsuHPI GGTGA 2 cut(s) 199, 1154
AsuII TTCGAA 2 cut(s) 380, 773
AvaII GGWCC 1 cut(s) 294
BaeGI GKGCMC 2 cut(s) 49, 225
BanI GGYRCC 2 cut(s) 479, 928
BanII GRGCYC 6 cut(s) 49, 78, 225, 240, 309, 593
BauI CACGAG 1 cut(s) 254
Bbv12I GWGCWC 4 cut(s) 66, 78, 309, 593
BbvCI CCTCAGC 4 cut(s) 1182, 1194, 1200, 1206
BbvI GCAGC 7 cut(s) 127, 130, 880, 959, 1057, 1072, 1260
BccI CCATC 2 cut(s) 437, 829
BceAI ACGGC 3 cut(s) 361, 433, 634
BcgI CGANNNNNNTGC 3 cut(s) 31, 862, 896
BciT130I CCWGG 1 cut(s) 961
BcnI CCSGG 3 cut(s) 36, 324, 484
BcoDI GTCTC 3 cut(s) 24, 549, 583
BfoI RGCGCY 2 cut(s) 483, 1138
BfrI CTTAAG 1 cut(s) 1064
BmcAI AGTACT 1 cut(s) 844
Bme1390I CCNGG 4 cut(s) 36, 324, 484, 961
Bme18I GGWCC 1 cut(s) 294
BmiI GGNNCC 7 cut(s) 47, 223, 317, 362, 481, 930, 1263
BmrFI CCNGG 4 cut(s) 36, 324, 484, 961
BmrI ACTGGG 2 cut(s) 484, 855
BmsI GCATC 1 cut(s) 674
BmuI ACTGGG 2 cut(s) 484, 855
Bpu10I CCTNAGC 4 cut(s) 1182, 1194, 1200, 1206
Bpu14I TTCGAA 2 cut(s) 380, 773
BpuEI CTTGAG 1 cut(s) 1070
BpuMI CCSGG 3 cut(s) 36, 324, 484
BsaHI GRCGYC 2 cut(s) 54, 480
BsaI GGTCTC 2 cut(s) 549, 583
BsaJI CCNNGG 8 cut(s) 23, 240, 300, 854, 872, 953, 959, 960
BsaWI WCCGGW 2 cut(s) 919, 1270
Bsc4I CCNNNNNNNGG 7 cut(s) 42, 219, 329, 330, 474, 979, 1153
Bse118I RCCGGY 2 cut(s) 278, 318
Bse1I ACTGG 2 cut(s) 479, 850
Bse3DI GCAATG 2 cut(s) 878, 913
BseBI CCWGG 1 cut(s) 961
BseDI CCNNGG 8 cut(s) 23, 240, 300, 854, 872, 953, 959, 960
BseGI GGATG 4 cut(s) 466, 565, 840, 943
BseLI CCNNNNNNNGG 7 cut(s) 42, 219, 329, 330, 474, 979, 1153
BseMI GCAATG 2 cut(s) 878, 913
BseMII CTCAG 7 cut(s) 560, 1173, 1185, 1191, 1197, 1232, 1248
BseNI ACTGG 2 cut(s) 479, 850
BseRI GAGGAG 9 cut(s) 317, 412, 423, 543, 728, 826, 833, 1013, 1126
BseSI GKGCMC 2 cut(s) 49, 225
BseXI GCAGC 7 cut(s) 127, 130, 880, 959, 1057, 1072, 1260
BseYI CCCAGC 2 cut(s) 573, 696
Bsh1236I CGCG 6 cut(s) 41, 158, 286, 288, 366, 454
Bsh1285I CGRYCG 2 cut(s) 279, 355
BshNI GGYRCC 2 cut(s) 479, 928
BsiEI CGRYCG 2 cut(s) 279, 355
BsiHKAI GWGCWC 4 cut(s) 66, 78, 309, 593
BsiSI CCGG 7 cut(s) 36, 279, 319, 324, 483, 920, 1271
BslI CCNNNNNNNGG 7 cut(s) 42, 219, 329, 330, 474, 979, 1153
BsmAI GTCTC 3 cut(s) 24, 549, 583
BsmBI CGTCTC 1 cut(s) 24
Bso31I GGTCTC 2 cut(s) 549, 583
Bsp119I TTCGAA 2 cut(s) 380, 773
Bsp120I GGGCCC 2 cut(s) 45, 221
Bsp1286I GDGCHC 7 cut(s) 49, 66, 78, 225, 240, 309, 593
Bsp143I GATC 3 cut(s) 105, 259, 352
BspCNI CTCAG 7 cut(s) 559, 1174, 1186, 1192, 1198, 1231, 1249
BspFNI CGCG 6 cut(s) 41, 158, 286, 288, 366, 454
BspLI GGNNCC 7 cut(s) 47, 223, 317, 362, 481, 930, 1263
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 54
BspT104I TTCGAA 2 cut(s) 380, 773
BspT107I GGYRCC 2 cut(s) 479, 928
BspTI CTTAAG 1 cut(s) 1064
BspTNI GGTCTC 2 cut(s) 549, 583
BsrBI CCGCTC 2 cut(s) 292, 643
BsrDI GCAATG 2 cut(s) 878, 913
BsrFI RCCGGY 2 cut(s) 278, 318
BsrI ACTGG 2 cut(s) 479, 850
BssAI RCCGGY 2 cut(s) 278, 318
BssECI CCNNGG 8 cut(s) 23, 240, 300, 854, 872, 953, 959, 960
BssMI GATC 3 cut(s) 105, 259, 352
BssNI GRCGYC 2 cut(s) 54, 480
BssSI CACGAG 1 cut(s) 254
BssT1I CCWWGG 2 cut(s) 23, 953
Bst2BI CACGAG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 961
Bst4CI ACNGT 3 cut(s) 13, 779, 1153
Bst6I CTCTTC 4 cut(s) 54, 512, 701, 1103
BstACI GRCGYC 2 cut(s) 54, 480
BstAFI CTTAAG 1 cut(s) 1064
BstBI TTCGAA 2 cut(s) 380, 773
BstC8I GCNNGC 5 cut(s) 99, 221, 284, 290, 456
BstDEI CTNAG 7 cut(s) 546, 1182, 1194, 1200, 1206, 1218, 1257
BstDSI CCRYGG 1 cut(s) 240
BstEII GGTNACC 1 cut(s) 1142
BstF5I GGATG 4 cut(s) 466, 565, 840, 943
BstFNI CGCG 6 cut(s) 41, 158, 286, 288, 366, 454
BstH2I RGCGCY 2 cut(s) 483, 1138
BstHHI GCGC 4 cut(s) 41, 288, 482, 1137
BstKTI GATC 3 cut(s) 108, 262, 355
BstMAI GTCTC 3 cut(s) 24, 549, 583
BstMBI GATC 3 cut(s) 105, 259, 352
BstMCI CGRYCG 2 cut(s) 279, 355
BstMWI GCNNNNNNNGC 7 cut(s) 53, 155, 348, 464, 627, 865, 1085
BstNI CCWGG 1 cut(s) 961
BstPI GGTNACC 1 cut(s) 1142
BstSCI CCNGG 4 cut(s) 34, 322, 482, 959
BstSLI GKGCMC 2 cut(s) 49, 225
BstUI CGCG 6 cut(s) 41, 158, 286, 288, 366, 454
BstV1I GCAGC 7 cut(s) 127, 130, 880, 959, 1057, 1072, 1260
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 4 cut(s) 466, 565, 840, 943
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 3 cut(s) 18, 637, 1149
Cac8I GCNNGC 5 cut(s) 99, 221, 284, 290, 456
CfoI GCGC 4 cut(s) 41, 288, 482, 1137
Cfr10I RCCGGY 2 cut(s) 278, 318
CpoI CGGWCCG 1 cut(s) 294
CseI GACGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 843
CspI CGGWCCG 1 cut(s) 294
CviAII CATG 1 cut(s) 1123
CviQI GTAC 1 cut(s) 843
DdeI CTNAG 7 cut(s) 546, 1182, 1194, 1200, 1206, 1218, 1257
DinI GGCGCC 1 cut(s) 481
DpnI GATC 3 cut(s) 107, 261, 354
DpnII GATC 3 cut(s) 105, 259, 352
DrdI GACNNNNNNGTC 1 cut(s) 575
DseDI GACNNNNNNGTC 1 cut(s) 575
Eam1104I CTCTTC 4 cut(s) 54, 512, 701, 1103
EarI CTCTTC 4 cut(s) 54, 512, 701, 1103
EciI GGCGGA 4 cut(s) 136, 473, 572, 1202
Ecl136II GAGCTC 3 cut(s) 76, 307, 591
Eco130I CCWWGG 2 cut(s) 23, 953
Eco24I GRGCYC 6 cut(s) 49, 78, 225, 240, 309, 593
Eco31I GGTCTC 2 cut(s) 549, 583
Eco47I GGWCC 1 cut(s) 294
Eco53kI GAGCTC 3 cut(s) 76, 307, 591
Eco91I GGTNACC 1 cut(s) 1142
EcoICRI GAGCTC 3 cut(s) 76, 307, 591
EcoO109I RGGNCCY 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 1142
EcoRII CCWGG 1 cut(s) 959
EcoT14I CCWWGG 2 cut(s) 23, 953
EcoT38I GRGCYC 6 cut(s) 49, 78, 225, 240, 309, 593
EgeI GGCGCC 1 cut(s) 481
EheI GGCGCC 1 cut(s) 481
ErhI CCWWGG 2 cut(s) 23, 953
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 1126
FaiI YATR 1 cut(s) 1124
FatI CATG 1 cut(s) 1122
FauI CCCGC 7 cut(s) 212, 238, 291, 323, 447, 493, 636
FokI GGATG 4 cut(s) 473, 572, 847, 950
FriOI GRGCYC 6 cut(s) 49, 78, 225, 240, 309, 593
GlaI GCGC 4 cut(s) 40, 287, 481, 1136
GsaI CCCAGC 2 cut(s) 577, 700
HaeII RGCGCY 2 cut(s) 483, 1138
HapII CCGG 7 cut(s) 36, 279, 319, 324, 483, 920, 1271
HgaI GACGC 1 cut(s) 62
HhaI GCGC 4 cut(s) 41, 288, 482, 1137
Hin1I GRCGYC 2 cut(s) 54, 480
Hin1II CATG 1 cut(s) 1126
Hin6I GCGC 4 cut(s) 39, 286, 480, 1135
HinP1I GCGC 4 cut(s) 39, 286, 480, 1135
HinfI GANTC 6 cut(s) 391, 563, 686, 791, 1052, 1097
HpaII CCGG 7 cut(s) 36, 279, 319, 324, 483, 920, 1271
HphI GGTGA 2 cut(s) 199, 1154
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 7 cut(s) 396, 568, 604, 691, 796, 1221, 1258
Hpy188III TCNNGA 3 cut(s) 274, 337, 580
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 4 cut(s) 56, 454, 473, 604
HpyCH4III ACNGT 3 cut(s) 13, 779, 1153
HpyCH4V TGCA 2 cut(s) 665, 868
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 155, 348, 464, 627, 865, 1085
HpyF3I CTNAG 7 cut(s) 546, 1182, 1194, 1200, 1206, 1218, 1257
Hsp92I GRCGYC 2 cut(s) 54, 480
Hsp92II CATG 1 cut(s) 1126
HspAI GCGC 4 cut(s) 39, 286, 480, 1135
KasI GGCGCC 1 cut(s) 479
Kzo9I GATC 3 cut(s) 105, 259, 352
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 3 cut(s) 304, 1157, 1245
Lsp1109I GCAGC 7 cut(s) 127, 130, 880, 959, 1057, 1072, 1260
LweI GCATC 1 cut(s) 674
MaeIII GTNAC 2 cut(s) 886, 1142
MalI GATC 3 cut(s) 107, 261, 354
MbiI CCGCTC 2 cut(s) 292, 643
MboI GATC 3 cut(s) 105, 259, 352
MhlI GDGCHC 7 cut(s) 49, 66, 78, 225, 240, 309, 593
MluCI AATT 3 cut(s) 769, 862, 1252
Mly113I GGCGCC 1 cut(s) 480
MlyI GAGTC 2 cut(s) 1061, 1106
MmeI TCCRAC 1 cut(s) 582
MseI TTAA 1 cut(s) 1065
MspA1I CMGCKG 1 cut(s) 573
MspCI CTTAAG 1 cut(s) 1064
MspI CCGG 7 cut(s) 36, 279, 319, 324, 483, 920, 1271
MspR9I CCNGG 4 cut(s) 36, 324, 484, 961
MvaI CCWGG 1 cut(s) 961
MvnI CGCG 6 cut(s) 41, 158, 286, 288, 366, 454
MwoI GCNNNNNNNGC 7 cut(s) 53, 155, 348, 464, 627, 865, 1085
NarI GGCGCC 1 cut(s) 480
NciI CCSGG 3 cut(s) 36, 324, 484
NdeII GATC 3 cut(s) 105, 259, 352
NlaIII CATG 1 cut(s) 1126
NlaIV GGNNCC 7 cut(s) 47, 223, 317, 362, 481, 930, 1263
NmeAIII GCCGAG 7 cut(s) 97, 226, 259, 325, 879, 897, 1017
NmuCI GTSAC 1 cut(s) 1142
NspV TTCGAA 2 cut(s) 380, 773
PasI CCCWGGG 1 cut(s) 960
PciSI GCTCTTC 1 cut(s) 54
PfeI GAWTC 4 cut(s) 391, 563, 686, 791
Ple19I CGATCG 1 cut(s) 355
PleI GAGTC 2 cut(s) 1060, 1105
PluTI GGCGCC 1 cut(s) 483
PpsI GAGTC 2 cut(s) 1060, 1105
Psp124BI GAGCTC 3 cut(s) 78, 309, 593
Psp6I CCWGG 1 cut(s) 959
PspEI GGTNACC 1 cut(s) 1142
PspFI CCCAGC 2 cut(s) 573, 696
PspGI CCWGG 1 cut(s) 959
PspN4I GGNNCC 7 cut(s) 47, 223, 317, 362, 481, 930, 1263
PspOMI GGGCCC 2 cut(s) 45, 221
PvuI CGATCG 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 573
RsaI GTAC 1 cut(s) 844
RsaNI GTAC 1 cut(s) 843
Rsr2I CGGWCCG 1 cut(s) 294
RsrII CGGWCCG 1 cut(s) 294
SacI GAGCTC 3 cut(s) 78, 309, 593
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 1065
Sau3AI GATC 3 cut(s) 105, 259, 352
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 2 cut(s) 1061, 1106
ScrFI CCNGG 4 cut(s) 36, 324, 484, 961
SduI GDGCHC 7 cut(s) 49, 66, 78, 225, 240, 309, 593
SfaNI GCATC 1 cut(s) 674
SfoI GGCGCC 1 cut(s) 481
SfuI TTCGAA 2 cut(s) 380, 773
SinI GGWCC 1 cut(s) 294
SmlI CTYRAG 2 cut(s) 1049, 1064
SmoI CTYRAG 2 cut(s) 1049, 1064
Sse9I AATT 3 cut(s) 769, 862, 1252
SspDI GGCGCC 1 cut(s) 479
SstI GAGCTC 3 cut(s) 78, 309, 593
StyD4I CCNGG 4 cut(s) 34, 322, 482, 959
StyI CCWWGG 2 cut(s) 23, 953
TaaI ACNGT 3 cut(s) 13, 779, 1153
TaqI TCGA 9 cut(s) 51, 78, 108, 309, 380, 551, 581, 668, 773
TasI AATT 3 cut(s) 769, 862, 1252
TatI WGTACW 1 cut(s) 842
TfiI GAWTC 4 cut(s) 391, 563, 686, 791
Tru1I TTAA 1 cut(s) 1065
Tru9I TTAA 1 cut(s) 1065
TscAI CASTG 3 cut(s) 18, 637, 1156
TseFI GTSAC 1 cut(s) 1142
TseI GCWGC 7 cut(s) 115, 118, 868, 947, 1045, 1085, 1248
Tsp45I GTSAC 1 cut(s) 1142
TspDTI ATGAA 2 cut(s) 576, 924
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 3 cut(s) 18, 637, 1156
Vha464I CTTAAG 1 cut(s) 1064
VpaK11BI GGWCC 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.