Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009133

Physical Location & Seq

Genomic Coordinates Forward (+)

13618550 .. 13620564

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCTTTTGCCGACCGGTCCGCGCGAGCGAACAGCCGAGGAGCTTGATCGGAATCGGCTCGGCGGCGGGTTCAGGTCTTATGGGGGCGATCGGGGAAACAGCAGGTATTCCAATGGTGACGAGTCTTCGGAGTCGAAGTGGGGTTCGGGTCAGAGGAAGGAAGGTGGGTTTGGGAGGGAATCGAACCGAGATGAGCCTTCGAGAGCGGATGAGGTTGATGATTGGGGCGCCAAGAAGAAATCGATGCCGGGAAATGGGTTTGAGAGGAGGGAGAGAGGAGGACCTGGAGGTAGTTTTTTTGGTGGGTCACAGTCGAAGGCTGATGAATCCAACAGCTGGGTATCGAATAAGAGCTCCATGCAGTCGGAGGGACGGAGATTTGGCGGTGGTGGCAGCGGGTTTGATCGGGAGAGGAAAGTAGGGTTCCCATCTAATGGAGGTGCTGATTCTGATAATTGGGGGAGGAAGAAGGAGGAGACTAATGGTGGGTCTGGATTTGATAGAGAGAGAAAAGTTGGGTTCGTTTCCAATGGCGGTGGTGCGGATTCTGATGTTTGGGGGAAGAAGAGAGAGGAGAGTAATGGTGGTCTTAGTGAGAGTACTGCGAGGCCCAGGCTTAATTTGCAGCCGAGGAGTTTGCCTGTGAGCAACGAGACCTCACCAGGGTCGACCACTCCACCGAAGCCCAAGGGCTCTAACCCATTTGGTGCAGCAAGGCCGAGGGAAGAGGTGTTGGCGGAGAAGGGGAAGGACTGGAAGGAGATTGATGAGCAGCTTGAGTCTGCTAAGATTAAGGAGGTGAAGGAGATAGCGAACAGCGAGTCGTTTGGGAGGAGTTTTGGGATGGGAAATGGGCGTGCTGGTGATCGAACTGAGAGAGCTTGGAGGAAGCCTGATTCGCCACTTCTGAGTGCTGATAAAAGTGAGACTAGGAGCAATTCTGAGGAACCACAGACCGAGCATGTTGAGTCGGAGAACGGGCATATGGAACCAGGGAACGAGCATGTTGATGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-4B

Protein Analysis

340

Amino Acids

36.84

Weight (kDa)

5.77

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38710 AT4G38710
fragaria_vesca	FvH4_2g01750
malus_domestica	MD05G1116800.v1.1 MD10G1119900.v1.1
prunus_persica	Prupe.8G161300_v2.0.a1
pyrus_communis	pycom05g11110 pycom10g10330
rosa_chinensis	RchiOBHm_Chr6g0244781
rosa_laevigata	RLG00000015329
rosa_multiflora	Rmu_co8397245.1_g000001 Rmu_sc0002064.1_g000007 Rmu_sc0012997.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215500
rosa_rugosa	Rorug05G0510600.1 Rorug05G0510700 Rorug05G0510700
rosa_samantha	Rh6AG025800 Rh6BG021500 Rh6CG020000 Rh6DG020600
rosa_wichuraiana	Rw6G002180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	336, 434
AccBSI	CCGCTC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	668
AccII	CGCG	2 cut(s)	22, 24
AciI	CCGC	9 cut(s)	20, 63, 66, 206, 384, 396, 534, 542, 737
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	4 cut(s)	254, 336, 434, 663
AgeI	ACCGGT	1 cut(s)	14
AjnI	CCWGG	4 cut(s)	283, 611, 661, 991
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	5 cut(s)	43, 336, 354, 775, 881
AluI	AGCT	5 cut(s)	43, 336, 354, 775, 881
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	3 cut(s)	470, 647, 920
AoxI	GGCC	2 cut(s)	608, 716
ApeKI	GCWGC	4 cut(s)	393, 625, 710, 772
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AsiGI	ACCGGT	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	24, 230
AspS9I	GGNCC	3 cut(s)	17, 281, 609
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	4 cut(s)	128, 651, 811, 875
AvaII	GGWCC	2 cut(s)	17, 281
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	356, 695
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	4 cut(s)	405, 637, 722, 784
BccI	CCATC	2 cut(s)	436, 838
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	4 cut(s)	285, 613, 663, 993
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	3 cut(s)	470, 647, 920
BfaI	CTAG	1 cut(s)	930
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	93
BisI	GCNGC	5 cut(s)	64, 394, 626, 711, 773
BlsI	GCNGC	5 cut(s)	65, 395, 627, 712, 774
BmcAI	AGTACT	1 cut(s)	601
Bme1390I	CCNGG	5 cut(s)	249, 285, 613, 663, 993
Bme18I	GGWCC	2 cut(s)	17, 281
BmgT120I	GGNCC	3 cut(s)	17, 281, 609
BmiI	GGNNCC	4 cut(s)	229, 425, 948, 990
BmrFI	CCNGG	5 cut(s)	249, 285, 613, 663, 993
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	7 cut(s)	36, 611, 629, 662, 687, 719, 992
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 336, 434, 663
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	758
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	4 cut(s)	285, 613, 663, 993
BseCI	ATCGAT	1 cut(s)	242
BseDI	CCNNGG	7 cut(s)	36, 611, 629, 662, 687, 719, 992
BseGI	GGATG	2 cut(s)	214, 849
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	4 cut(s)	254, 336, 434, 663
BseMII	CTCAG	3 cut(s)	864, 899, 933
BseNI	ACTGG	1 cut(s)	758
BseRI	GAGGAG	7 cut(s)	53, 280, 291, 488, 587, 646, 847
BseXI	GCAGC	4 cut(s)	405, 637, 722, 784
BseYI	CCCAGC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	2 cut(s)	22, 24
Bsh1285I	CGRYCG	2 cut(s)	15, 91
BshFI	GGCC	2 cut(s)	610, 718
BshNI	GGYRCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	242
BsiEI	CGRYCG	2 cut(s)	15, 91
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	15, 248
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	4 cut(s)	254, 336, 434, 663
BsmAI	GTCTC	3 cut(s)	470, 647, 920
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	610, 718
Bso31I	GGTCTC	1 cut(s)	647
Bsp1286I	GDGCHC	2 cut(s)	356, 695
Bsp143I	GATC	4 cut(s)	46, 88, 403, 865
BspACI	CCGC	9 cut(s)	20, 63, 66, 206, 384, 396, 534, 542, 737
BspANI	GGCC	2 cut(s)	610, 718
BspCNI	CTCAG	3 cut(s)	865, 900, 934
BspDI	ATCGAT	1 cut(s)	242
BspFNI	CGCG	2 cut(s)	22, 24
BspLI	GGNNCC	4 cut(s)	229, 425, 948, 990
BspMI	ACCTGC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	647
BsrBI	CCGCTC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	758
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	7 cut(s)	36, 611, 629, 662, 687, 719, 992
BssMI	GATC	4 cut(s)	46, 88, 403, 865
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	687
Bst2UI	CCWGG	4 cut(s)	285, 613, 663, 993
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	2 cut(s)	560, 720
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	26, 858
BstDEI	CTNAG	5 cut(s)	590, 786, 873, 908, 942
BstF5I	GGATG	2 cut(s)	214, 849
BstFNI	CGCG	2 cut(s)	22, 24
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	24, 230
BstKTI	GATC	4 cut(s)	49, 91, 406, 868
BstMAI	GTCTC	3 cut(s)	470, 647, 920
BstMBI	GATC	4 cut(s)	46, 88, 403, 865
BstMCI	CGRYCG	2 cut(s)	15, 91
BstMWI	GCNNNNNNNGC	3 cut(s)	390, 622, 898
BstNI	CCWGG	4 cut(s)	285, 613, 663, 993
BstNSI	RCATGY	2 cut(s)	965, 1007
BstSCI	CCNGG	5 cut(s)	247, 283, 611, 661, 991
BstUI	CGCG	2 cut(s)	22, 24
BstV1I	GCAGC	4 cut(s)	405, 637, 722, 784
BstV2I	GAAGAC	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	610, 718
BsuTUI	ATCGAT	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	214, 849
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	26, 858
CfoI	GCGC	2 cut(s)	24, 230
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	17, 281, 609
ClaI	ATCGAT	1 cut(s)	242
CpoI	CGGWCCG	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	600
CspAI	ACCGGT	1 cut(s)	14
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CspI	CGGWCCG	1 cut(s)	17
CviAII	CATG	3 cut(s)	358, 962, 1004
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	5 cut(s)	590, 786, 873, 908, 942
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	4 cut(s)	48, 90, 405, 867
DpnII	GATC	4 cut(s)	46, 88, 403, 865
Eam1104I	CTCTTC	2 cut(s)	560, 720
EarI	CTCTTC	2 cut(s)	560, 720
EciI	GGCGGA	1 cut(s)	752
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	687
Eco24I	GRGCYC	2 cut(s)	356, 695
Eco31I	GGTCTC	1 cut(s)	647
Eco47I	GGWCC	2 cut(s)	17, 281
Eco53kI	GAGCTC	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	4 cut(s)	283, 611, 661, 991
EcoT14I	CCWWGG	1 cut(s)	687
EcoT38I	GRGCYC	2 cut(s)	356, 695
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	3 cut(s)	361, 965, 1007
FaiI	YATR	6 cut(s)	81, 359, 963, 984, 986, 1005
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	3 cut(s)	357, 961, 1003
FauI	CCCGC	2 cut(s)	59, 389
FauNDI	CATATG	1 cut(s)	984
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	5 cut(s)	64, 394, 626, 711, 773
FokI	GGATG	2 cut(s)	221, 856
FriOI	GRGCYC	2 cut(s)	356, 695
Fsp4HI	GCNGC	5 cut(s)	64, 394, 626, 711, 773
FspBI	CTAG	1 cut(s)	930
GlaI	GCGC	2 cut(s)	23, 229
GluI	GCNGC	5 cut(s)	64, 394, 626, 711, 773
GsaI	CCCAGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	610, 718
HapII	CCGG	2 cut(s)	15, 248
HhaI	GCGC	2 cut(s)	24, 230
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	361, 965, 1007
Hin6I	GCGC	2 cut(s)	22, 228
HinP1I	GCGC	2 cut(s)	22, 228
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HpaII	CCGG	2 cut(s)	15, 248
HphI	GGTGA	4 cut(s)	128, 651, 811, 875
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	9 cut(s)	51, 130, 153, 367, 451, 550, 909, 943, 973
Hpy188III	TCNNGA	3 cut(s)	201, 407, 492
Hpy8I	GTNNAC	1 cut(s)	669
HpyAV	CCTTC	9 cut(s)	151, 155, 207, 310, 463, 736, 742, 751, 796
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	3 cut(s)	361, 625, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	390, 622, 898
HpyF3I	CTNAG	5 cut(s)	590, 786, 873, 908, 942
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	361, 965, 1007
HspAI	GCGC	2 cut(s)	22, 228
KasI	GGCGCC	1 cut(s)	227
Kzo9I	GATC	4 cut(s)	46, 88, 403, 865
LmnI	GCTCC	3 cut(s)	40, 359, 933
Lsp1109I	GCAGC	4 cut(s)	405, 637, 722, 784
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	930
MaeIII	GTNAC	2 cut(s)	116, 306
MalI	GATC	4 cut(s)	48, 90, 405, 867
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	4 cut(s)	46, 88, 403, 865
MboII	GAAGA	6 cut(s)	117, 247, 478, 574, 577, 737
MhlI	GDGCHC	2 cut(s)	356, 695
MluCI	AATT	4 cut(s)	454, 619, 937, 1015
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	5 cut(s)	131, 140, 788, 830, 977
MmeI	TCCRAC	3 cut(s)	345, 354, 951
MseI	TTAA	2 cut(s)	618, 792
MslI	CAYNNNNRTG	1 cut(s)	1008
MspA1I	CMGCKG	2 cut(s)	336, 396
MspI	CCGG	2 cut(s)	15, 248
MspR9I	CCNGG	5 cut(s)	249, 285, 613, 663, 993
MvaI	CCWGG	4 cut(s)	285, 613, 663, 993
MvnI	CGCG	2 cut(s)	22, 24
MwoI	GCNNNNNNNGC	3 cut(s)	390, 622, 898
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	249
NdeI	CATATG	1 cut(s)	984
NdeII	GATC	4 cut(s)	46, 88, 403, 865
NlaIII	CATG	3 cut(s)	361, 965, 1007
NlaIV	GGNNCC	4 cut(s)	229, 425, 948, 990
NmeAIII	GCCGAG	4 cut(s)	39, 61, 654, 744
NmuCI	GTSAC	2 cut(s)	116, 306
NspI	RCATGY	2 cut(s)	965, 1007
PfeI	GAWTC	6 cut(s)	52, 179, 326, 446, 545, 896
PflMI	CCANNNNNTGG	2 cut(s)	336, 434
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	65, 395, 627, 712, 774
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	5 cut(s)	130, 139, 787, 829, 976
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	5 cut(s)	130, 139, 787, 829, 976
PpuMI	RGGWCCY	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	4 cut(s)	283, 611, 661, 991
PspFI	CCCAGC	1 cut(s)	336
PspGI	CCWGG	4 cut(s)	283, 611, 661, 991
PspN4I	GGNNCC	4 cut(s)	229, 425, 948, 990
PspPI	GGNCC	3 cut(s)	17, 281, 609
PspPPI	RGGWCCY	1 cut(s)	281
PvuI	CGATCG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	336
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
RseI	CAYNNNNRTG	1 cut(s)	1008
Rsr2I	CGGWCCG	1 cut(s)	17
RsrII	CGGWCCG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	667
SaqAI	TTAA	2 cut(s)	618, 792
SatI	GCNGC	5 cut(s)	64, 394, 626, 711, 773
Sau3AI	GATC	4 cut(s)	46, 88, 403, 865
Sau96I	GGNCC	3 cut(s)	17, 281, 609
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	5 cut(s)	131, 140, 788, 830, 977
ScrFI	CCNGG	5 cut(s)	249, 285, 613, 663, 993
SduI	GDGCHC	2 cut(s)	356, 695
SfaNI	GCATC	1 cut(s)	234
SfoI	GGCGCC	1 cut(s)	229
SinI	GGWCC	2 cut(s)	17, 281
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	4 cut(s)	454, 619, 937, 1015
SsiI	CCGC	9 cut(s)	20, 63, 66, 206, 384, 396, 534, 542, 737
SspDI	GGCGCC	1 cut(s)	227
SspMI	CTAG	1 cut(s)	930
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	5 cut(s)	247, 283, 611, 661, 991
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	8 cut(s)	134, 182, 200, 242, 314, 344, 668, 868
TaqII	GACCGA	1 cut(s)	971
TasI	AATT	4 cut(s)	454, 619, 937, 1015
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	6 cut(s)	52, 179, 326, 446, 545, 896
Tru1I	TTAA	2 cut(s)	618, 792
Tru9I	TTAA	2 cut(s)	618, 792
TseFI	GTSAC	2 cut(s)	116, 306
TseI	GCWGC	4 cut(s)	393, 625, 710, 772
Tsp45I	GTSAC	2 cut(s)	116, 306
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	1 cut(s)	388
Van91I	CCANNNNNTGG	2 cut(s)	336, 434
VpaK11BI	GGWCC	2 cut(s)	17, 281
XceI	RCATGY	2 cut(s)	965, 1007
XmiI	GTMKAC	1 cut(s)	668
XspI	CTAG	1 cut(s)	930
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.