Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009133

Physical Location & Seq

Genomic Coordinates Reverse (-)

765195 .. 767888

Gene Structure 2694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCGGCAACAGTGTCGTCTCCTTGGGCCAAGCCCGGCGCGTGGGCCCTCGACGCCGAAGAGCACGAAGCCGAGCTCGAACAACAACAACAACATCAGGCCAAGATCGAAACGCAGCAGCCCCTCGCTGACTTCCCCTCTCTCTCCGCCGCCGTCGCGAAGCCGAAGAAGAAGAACAAGGGCCAGAAGGTCAGCCTCGCCGAGTTCTCCACCTTCGGCGGGCCCAAACCCGCCGAGCCCGTGGGCCTGACCCACGAGGATCGGTTGGTTCTCCCGACCGGCCCGCGCGAGCGGACAGCCGAGGAGCTCGAACGGAACCGGCCCGGCGGCGGGTTCAAGAGCTACGGCGGCGATCGGGGGAACCGCGAGGATTTGAGTTCGAAGTGGGGGAATCAGAGGAGGGAAGGAGGAGGGTTCGGGGGGAAAGAAGGAGGGGAGAGAGATGGGCCGTCGCGGGCGGATGAGGCCGACGACTGGGGCGCCGGGAAGAAATCGGTGGCGGGGAATGGGTTTGAGAAGAGGGATAGAGGAGGGTTCTTTGGGTCTCAGTCGAAGGCGGATGAATCTGACAGCTGGGTCTCGAATAAGAGCTCGTTTTCGTCGGAGGGAAGGAGATACGGCGGCTCTGGCAGTGGGTTTGAGCGGGAGAGGAAGGTTGGGTTTGCATCGAATGGCGGCGGTGCTGATTCGGAGAGCTGGGGCAGGAAGAGGGAGGAGAGTAATGGTGGTGGTGGGTTTGAAAGGGAGAGGAAGGTAGGGTTAGGGTTCAATTCGAACGGTGGCGGTGCGGATTCGGAGAGTTGGGGAAGGAAGAGGGAGGAGAGTAATGGTGGGATGGAGAGTACTGGGAGGCCGAGGCTCAATTTGCAGCCGAGGACATTGCCTGTTGTGAGCAATGAAACCTCACCGGTGGCGGTGCCTGTGGATGTGGCGGCAGCACCAAGGCCCAGGGGTTCGAACCCGTTTGGGGCGGCGAGGCCCAGAGAGGAGGTTTTGGCAGAGAAGGGGCAGGATTGGAAGAAGATTGACGAGCAGCTTGAGTCTGTGAAACTTAAGGAGAAGGAGGCTGTGGCTGCCGAAGGGGAGTCTTTTGGGAAGAGGAGTTTTGGGATGGGAAATGGGCGCTCTGGTGACCGCACCGTGGGAGCTTGGAGGAAACCTGTTGTGGCTGAGGCGGAGGCAGAGGCTGAGGCTCGTCCTCAGAGTGCTGGAAACGATGAGAGTAGGAGCAGCAATTCTGAGGAACCAGAACCGGAGAATGAGAATGTCAATGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-4B

Protein Analysis

426

Amino Acids

45.63

Weight (kDa)

5.52

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-4B	PF06273	6 - 214	3.4e-36	Plant specific eukaryotic initiation factor 4B
eIF-4B	PF06273	182 - 351	3.2e-18	Plant specific eukaryotic initiation factor 4B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38710 AT4G38710
fragaria_vesca	FvH4_2g01750
malus_domestica	MD05G1116800.v1.1 MD10G1119900.v1.1
prunus_persica	Prupe.8G161300_v2.0.a1
pyrus_communis	pycom05g11110 pycom10g10330
rosa_chinensis	RchiOBHm_Chr6g0244781
rosa_laevigata	RLG00000015329
rosa_multiflora	Rmu_co8397245.1_g000001 Rmu_sc0002064.1_g000007 Rmu_sc0012997.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215500
rosa_rugosa	Rorug05G0510600.1 Rorug05G0510700 Rorug05G0510700
rosa_samantha	Rh6AG025800 Rh6BG021500 Rh6CG020000 Rh6DG020600
rosa_wichuraiana	Rw6G002180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	575
AccB1I	GGYRCC	2 cut(s)	479, 916
AccBSI	CCGCTC	2 cut(s)	292, 643
AccII	CGCG	6 cut(s)	41, 158, 286, 288, 366, 454
AclWI	GGATC	1 cut(s)	267
AcyI	GRCGYC	2 cut(s)	54, 480
AfaI	GTAC	1 cut(s)	844
AfiI	CCNNNNNNNGG	7 cut(s)	42, 219, 329, 330, 474, 967, 1141
AflII	CTTAAG	1 cut(s)	1052
AgeI	ACCGGT	1 cut(s)	907
AgsI	TTSAA	3 cut(s)	337, 740, 769
AjnI	CCWGG	1 cut(s)	947
AluBI	AGCT	8 cut(s)	76, 307, 342, 573, 591, 696, 1036, 1148
AluI	AGCT	8 cut(s)	76, 307, 342, 573, 591, 696, 1036, 1148
Alw21I	GWGCWC	4 cut(s)	66, 78, 309, 593
Alw26I	GTCTC	3 cut(s)	24, 549, 583
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	1187
ApaI	GGGCCC	2 cut(s)	49, 225
ApeKI	GCWGC	7 cut(s)	115, 118, 868, 935, 1033, 1073, 1230
AsiGI	ACCGGT	1 cut(s)	907
AspLEI	GCGC	4 cut(s)	41, 288, 482, 1125
AsuC2I	CCSGG	3 cut(s)	36, 324, 484
AsuHPI	GGTGA	2 cut(s)	897, 1142
AsuII	TTCGAA	3 cut(s)	380, 773, 956
BaeGI	GKGCMC	2 cut(s)	49, 225
BanI	GGYRCC	2 cut(s)	479, 916
BanII	GRGCYC	6 cut(s)	49, 78, 225, 240, 309, 593
BauI	CACGAG	1 cut(s)	254
Bbv12I	GWGCWC	4 cut(s)	66, 78, 309, 593
BbvCI	CCTCAGC	2 cut(s)	1170, 1188
BbvI	GCAGC	7 cut(s)	127, 130, 880, 947, 1045, 1060, 1242
BccI	CCATC	3 cut(s)	437, 829, 1105
BceAI	ACGGC	4 cut(s)	137, 361, 433, 634
BcgI	CGANNNNNNTGC	3 cut(s)	31, 862, 896
BciT130I	CCWGG	1 cut(s)	949
BcnI	CCSGG	3 cut(s)	36, 324, 484
BcoDI	GTCTC	3 cut(s)	24, 549, 583
BfoI	RGCGCY	2 cut(s)	483, 1126
BfrI	CTTAAG	1 cut(s)	1052
BmcAI	AGTACT	1 cut(s)	844
Bme1390I	CCNGG	4 cut(s)	36, 324, 484, 949
BmiI	GGNNCC	7 cut(s)	47, 223, 317, 362, 481, 918, 1245
BmrFI	CCNGG	4 cut(s)	36, 324, 484, 949
BmrI	ACTGGG	2 cut(s)	484, 855
BmsI	GCATC	1 cut(s)	674
BmuI	ACTGGG	2 cut(s)	484, 855
Bpu10I	CCTNAGC	2 cut(s)	1170, 1188
Bpu14I	TTCGAA	3 cut(s)	380, 773, 956
BpuEI	CTTGAG	1 cut(s)	1058
BpuMI	CCSGG	3 cut(s)	36, 324, 484
BsaHI	GRCGYC	2 cut(s)	54, 480
BsaI	GGTCTC	2 cut(s)	549, 583
BsaJI	CCNNGG	9 cut(s)	23, 240, 300, 854, 872, 941, 947, 948, 1140
BsaWI	WCCGGW	2 cut(s)	907, 1252
Bsc4I	CCNNNNNNNGG	7 cut(s)	42, 219, 329, 330, 474, 967, 1141
Bse118I	RCCGGY	3 cut(s)	278, 318, 907
Bse1I	ACTGG	2 cut(s)	479, 850
Bse3DI	GCAATG	2 cut(s)	878, 901
BseBI	CCWGG	1 cut(s)	949
BseDI	CCNNGG	9 cut(s)	23, 240, 300, 854, 872, 941, 947, 948, 1140
BseGI	GGATG	5 cut(s)	466, 565, 840, 931, 1116
BseLI	CCNNNNNNNGG	7 cut(s)	42, 219, 329, 330, 474, 967, 1141
BseMI	GCAATG	2 cut(s)	878, 901
BseMII	CTCAG	5 cut(s)	560, 1161, 1179, 1214, 1230
BseNI	ACTGG	2 cut(s)	479, 850
BseRI	GAGGAG	8 cut(s)	317, 412, 423, 543, 728, 833, 1001, 1114
BseSI	GKGCMC	2 cut(s)	49, 225
BseXI	GCAGC	7 cut(s)	127, 130, 880, 947, 1045, 1060, 1242
BseYI	CCCAGC	2 cut(s)	573, 696
Bsh1236I	CGCG	6 cut(s)	41, 158, 286, 288, 366, 454
Bsh1285I	CGRYCG	2 cut(s)	279, 355
BshNI	GGYRCC	2 cut(s)	479, 916
BshTI	ACCGGT	1 cut(s)	907
BsiEI	CGRYCG	2 cut(s)	279, 355
BsiHKAI	GWGCWC	4 cut(s)	66, 78, 309, 593
BsiSI	CCGG	7 cut(s)	36, 279, 319, 324, 483, 908, 1253
BslI	CCNNNNNNNGG	7 cut(s)	42, 219, 329, 330, 474, 967, 1141
BsmAI	GTCTC	3 cut(s)	24, 549, 583
BsmBI	CGTCTC	1 cut(s)	24
Bso31I	GGTCTC	2 cut(s)	549, 583
Bsp119I	TTCGAA	3 cut(s)	380, 773, 956
Bsp120I	GGGCCC	2 cut(s)	45, 221
Bsp1286I	GDGCHC	7 cut(s)	49, 66, 78, 225, 240, 309, 593
Bsp143I	GATC	3 cut(s)	105, 259, 352
Bsp68I	TCGCGA	1 cut(s)	158
BspCNI	CTCAG	5 cut(s)	559, 1162, 1180, 1213, 1231
BspFNI	CGCG	6 cut(s)	41, 158, 286, 288, 366, 454
BspLI	GGNNCC	7 cut(s)	47, 223, 317, 362, 481, 918, 1245
BspPI	GGATC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	54
BspT104I	TTCGAA	3 cut(s)	380, 773, 956
BspT107I	GGYRCC	2 cut(s)	479, 916
BspTI	CTTAAG	1 cut(s)	1052
BspTNI	GGTCTC	2 cut(s)	549, 583
BsrBI	CCGCTC	2 cut(s)	292, 643
BsrDI	GCAATG	2 cut(s)	878, 901
BsrFI	RCCGGY	3 cut(s)	278, 318, 907
BsrI	ACTGG	2 cut(s)	479, 850
BssAI	RCCGGY	3 cut(s)	278, 318, 907
BssECI	CCNNGG	9 cut(s)	23, 240, 300, 854, 872, 941, 947, 948, 1140
BssMI	GATC	3 cut(s)	105, 259, 352
BssNI	GRCGYC	2 cut(s)	54, 480
BssSI	CACGAG	1 cut(s)	254
BssT1I	CCWWGG	2 cut(s)	23, 941
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	949
Bst4CI	ACNGT	3 cut(s)	13, 779, 1141
Bst6I	CTCTTC	5 cut(s)	54, 512, 701, 806, 1091
BstACI	GRCGYC	2 cut(s)	54, 480
BstAFI	CTTAAG	1 cut(s)	1052
BstBI	TTCGAA	3 cut(s)	380, 773, 956
BstC8I	GCNNGC	4 cut(s)	221, 284, 290, 456
BstDEI	CTNAG	5 cut(s)	546, 1170, 1188, 1200, 1239
BstDSI	CCRYGG	2 cut(s)	240, 1140
BstEII	GGTNACC	1 cut(s)	1130
BstF5I	GGATG	5 cut(s)	466, 565, 840, 931, 1116
BstFNI	CGCG	6 cut(s)	41, 158, 286, 288, 366, 454
BstH2I	RGCGCY	2 cut(s)	483, 1126
BstHHI	GCGC	4 cut(s)	41, 288, 482, 1125
BstKTI	GATC	3 cut(s)	108, 262, 355
BstMAI	GTCTC	3 cut(s)	24, 549, 583
BstMBI	GATC	3 cut(s)	105, 259, 352
BstMCI	CGRYCG	2 cut(s)	279, 355
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 155, 348, 464, 627, 865, 1073
BstNI	CCWGG	1 cut(s)	949
BstPI	GGTNACC	1 cut(s)	1130
BstSCI	CCNGG	4 cut(s)	34, 322, 482, 947
BstSLI	GKGCMC	2 cut(s)	49, 225
BstUI	CGCG	6 cut(s)	41, 158, 286, 288, 366, 454
BstV1I	GCAGC	7 cut(s)	127, 130, 880, 947, 1045, 1060, 1242
BtgI	CCRYGG	2 cut(s)	240, 1140
BtsCI	GGATG	5 cut(s)	466, 565, 840, 931, 1116
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	18, 637
BtuMI	TCGCGA	1 cut(s)	158
Cac8I	GCNNGC	4 cut(s)	221, 284, 290, 456
CaiI	CAGNNNCTG	1 cut(s)	1187
CfoI	GCGC	4 cut(s)	41, 288, 482, 1125
Cfr10I	RCCGGY	3 cut(s)	278, 318, 907
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	843
CspAI	ACCGGT	1 cut(s)	907
CviQI	GTAC	1 cut(s)	843
DdeI	CTNAG	5 cut(s)	546, 1170, 1188, 1200, 1239
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	3 cut(s)	107, 261, 354
DpnII	GATC	3 cut(s)	105, 259, 352
DrdI	GACNNNNNNGTC	1 cut(s)	575
DseDI	GACNNNNNNGTC	1 cut(s)	575
Eam1104I	CTCTTC	5 cut(s)	54, 512, 701, 806, 1091
EarI	CTCTTC	5 cut(s)	54, 512, 701, 806, 1091
EciI	GGCGGA	4 cut(s)	136, 473, 572, 1190
Ecl136II	GAGCTC	3 cut(s)	76, 307, 591
Eco130I	CCWWGG	2 cut(s)	23, 941
Eco24I	GRGCYC	6 cut(s)	49, 78, 225, 240, 309, 593
Eco31I	GGTCTC	2 cut(s)	549, 583
Eco53kI	GAGCTC	3 cut(s)	76, 307, 591
Eco91I	GGTNACC	1 cut(s)	1130
EcoICRI	GAGCTC	3 cut(s)	76, 307, 591
EcoO109I	RGGNCCY	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	1130
EcoRII	CCWGG	1 cut(s)	947
EcoT14I	CCWWGG	2 cut(s)	23, 941
EcoT38I	GRGCYC	6 cut(s)	49, 78, 225, 240, 309, 593
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	23, 941
Esp3I	CGTCTC	1 cut(s)	24
FauI	CCCGC	7 cut(s)	212, 238, 291, 323, 447, 493, 636
FokI	GGATG	5 cut(s)	473, 572, 847, 938, 1123
FriOI	GRGCYC	6 cut(s)	49, 78, 225, 240, 309, 593
GlaI	GCGC	4 cut(s)	40, 287, 481, 1124
GsaI	CCCAGC	2 cut(s)	577, 700
HaeII	RGCGCY	2 cut(s)	483, 1126
HapII	CCGG	7 cut(s)	36, 279, 319, 324, 483, 908, 1253
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	4 cut(s)	41, 288, 482, 1125
Hin1I	GRCGYC	2 cut(s)	54, 480
Hin6I	GCGC	4 cut(s)	39, 286, 480, 1123
HinP1I	GCGC	4 cut(s)	39, 286, 480, 1123
HinfI	GANTC	6 cut(s)	391, 563, 686, 791, 1040, 1085
HpaII	CCGG	7 cut(s)	36, 279, 319, 324, 483, 908, 1253
HphI	GGTGA	2 cut(s)	897, 1142
Hpy188I	TCNGA	7 cut(s)	396, 568, 604, 691, 796, 1203, 1240
Hpy188III	TCNNGA	4 cut(s)	157, 274, 337, 580
Hpy99I	CGWCG	5 cut(s)	56, 158, 454, 473, 604
HpyCH4III	ACNGT	3 cut(s)	13, 779, 1141
HpyCH4V	TGCA	2 cut(s)	665, 868
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 155, 348, 464, 627, 865, 1073
HpyF3I	CTNAG	5 cut(s)	546, 1170, 1188, 1200, 1239
Hsp92I	GRCGYC	2 cut(s)	54, 480
HspAI	GCGC	4 cut(s)	39, 286, 480, 1123
KasI	GGCGCC	1 cut(s)	479
Kzo9I	GATC	3 cut(s)	105, 259, 352
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	304, 1145, 1227
Lsp1109I	GCAGC	7 cut(s)	127, 130, 880, 947, 1045, 1060, 1242
LweI	GCATC	1 cut(s)	674
MaeIII	GTNAC	1 cut(s)	1130
MalI	GATC	3 cut(s)	107, 261, 354
MbiI	CCGCTC	2 cut(s)	292, 643
MboI	GATC	3 cut(s)	105, 259, 352
MhlI	GDGCHC	7 cut(s)	49, 66, 78, 225, 240, 309, 593
MluCI	AATT	3 cut(s)	769, 862, 1234
Mly113I	GGCGCC	1 cut(s)	480
MlyI	GAGTC	2 cut(s)	1049, 1094
MmeI	TCCRAC	1 cut(s)	582
MseI	TTAA	1 cut(s)	1053
MspA1I	CMGCKG	1 cut(s)	573
MspCI	CTTAAG	1 cut(s)	1052
MspI	CCGG	7 cut(s)	36, 279, 319, 324, 483, 908, 1253
MspR9I	CCNGG	4 cut(s)	36, 324, 484, 949
MvaI	CCWGG	1 cut(s)	949
MvnI	CGCG	6 cut(s)	41, 158, 286, 288, 366, 454
MwoI	GCNNNNNNNGC	7 cut(s)	53, 155, 348, 464, 627, 865, 1073
NarI	GGCGCC	1 cut(s)	480
NciI	CCSGG	3 cut(s)	36, 324, 484
NdeII	GATC	3 cut(s)	105, 259, 352
NlaIV	GGNNCC	7 cut(s)	47, 223, 317, 362, 481, 918, 1245
NmeAIII	GCCGAG	6 cut(s)	97, 226, 259, 325, 879, 897
NmuCI	GTSAC	1 cut(s)	1130
NruI	TCGCGA	1 cut(s)	158
NspV	TTCGAA	3 cut(s)	380, 773, 956
PasI	CCCWGGG	1 cut(s)	948
PciSI	GCTCTTC	1 cut(s)	54
PfeI	GAWTC	4 cut(s)	391, 563, 686, 791
PinAI	ACCGGT	1 cut(s)	907
Ple19I	CGATCG	1 cut(s)	355
PleI	GAGTC	2 cut(s)	1048, 1093
PluTI	GGCGCC	1 cut(s)	483
PpsI	GAGTC	2 cut(s)	1048, 1093
Psp124BI	GAGCTC	3 cut(s)	78, 309, 593
Psp6I	CCWGG	1 cut(s)	947
PspEI	GGTNACC	1 cut(s)	1130
PspFI	CCCAGC	2 cut(s)	573, 696
PspGI	CCWGG	1 cut(s)	947
PspN4I	GGNNCC	7 cut(s)	47, 223, 317, 362, 481, 918, 1245
PspOMI	GGGCCC	2 cut(s)	45, 221
PstNI	CAGNNNCTG	1 cut(s)	1187
PvuI	CGATCG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	573
RruI	TCGCGA	1 cut(s)	158
RsaI	GTAC	1 cut(s)	844
RsaNI	GTAC	1 cut(s)	843
SacI	GAGCTC	3 cut(s)	78, 309, 593
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	1053
Sau3AI	GATC	3 cut(s)	105, 259, 352
ScaI	AGTACT	1 cut(s)	844
SchI	GAGTC	2 cut(s)	1049, 1094
ScrFI	CCNGG	4 cut(s)	36, 324, 484, 949
SduI	GDGCHC	7 cut(s)	49, 66, 78, 225, 240, 309, 593
SfaNI	GCATC	1 cut(s)	674
SfoI	GGCGCC	1 cut(s)	481
SfuI	TTCGAA	3 cut(s)	380, 773, 956
SgrAI	CRCCGGYG	1 cut(s)	907
SmlI	CTYRAG	2 cut(s)	1037, 1052
SmoI	CTYRAG	2 cut(s)	1037, 1052
Sse9I	AATT	3 cut(s)	769, 862, 1234
SspDI	GGCGCC	1 cut(s)	479
SstI	GAGCTC	3 cut(s)	78, 309, 593
StyD4I	CCNGG	4 cut(s)	34, 322, 482, 947
StyI	CCWWGG	2 cut(s)	23, 941
TaaI	ACNGT	3 cut(s)	13, 779, 1141
TasI	AATT	3 cut(s)	769, 862, 1234
TatI	WGTACW	1 cut(s)	842
TauI	GCSGC	8 cut(s)	8, 152, 330, 351, 624, 678, 935, 974
TfiI	GAWTC	4 cut(s)	391, 563, 686, 791
Tru1I	TTAA	1 cut(s)	1053
Tru9I	TTAA	1 cut(s)	1053
TscAI	CASTG	2 cut(s)	18, 637
TseFI	GTSAC	1 cut(s)	1130
TseI	GCWGC	7 cut(s)	115, 118, 868, 935, 1033, 1073, 1230
Tsp45I	GTSAC	1 cut(s)	1130
TspDTI	ATGAA	2 cut(s)	576, 912
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	2 cut(s)	18, 637
Vha464I	CTTAAG	1 cut(s)	1052
ZrmI	AGTACT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.