FvH4_2g01750

Plant specific eukaryotic initiation factor 4B

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
1530533 .. 1533367
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01750.t1

Sequence Viewer

Length: 1269 bp
ATGGCGGCAACAGTGTCGTCTCCTTGGGCCAAACCCGGCGCCTGGGCCCTCGACGCCGAGGAGCACGAAGCCGAGCTCGAACAGCAGACCAAGATCGAAACCCAGCCCTTAGCCGACTTCCCATCTCTCTCCGCCGCCGCAGCGAAGCCGAAGAAGAAGAGCAAGGGCCAGAAGGTCAGCCTCGCCGAGTTCACCACCTTCGGCGGGCCCAAGCCGGTCCAGGCCGAGCCGGTGGGGTTGACCCACGAGGATCGGCTGGTTCTGCCAACCGGCCCGCGCGAGCGGACAGCGGAGGAGCTCGACCGGAGCCGCGGGTTCAGGAGCTACGGCGGCGATCGGGTCAACCGGGAGGAGTCGAATTCGAAGTGGGGGAGTCAGAGGAGAGAGGGAGGAGGGTTTGGAGGGGAAAAGACGGATAGGGACGCGCCGTCGAGGGCGGATGAGGCCGACGATTGGGGCGTCGGGAAGAAATCGGTTGGGAATGGGTTTGAGAGGAGGGAGAGAGCAGGGTTTGGGTTTGGGTCTCAGTCGAAGGCGGATGAATCTGACAGCTGGGTGTCGAACAAGAGCTCGTTTTCTTCGCTCCGATCCGGCGGCGGCGGCGGGTTTGAGCGGGAGAGGAAGGTCGGGTTTGCGTCGAATGGCGGTGGGGCTGATTCGGAGAGCTGGGGGAGGAAGAGGGAGGAGAGTAATGGTGGTTTCGAAAGGGAGAGGAAGGTAGGGTTAGAGTTCAATTCAAACGGCGGCGGTGCCGATGCGGAGAGTTGGGGAAGGAGGAGAGAGGAGAGTAATGGTGGGACGGAGACTACAGGGAGGCCGAGGCTGAATTTGCAGCCGAGGACACTGCCCGTTACTCTGCCGCCGCCTGTTGTGAGCGACGAGACCTCACCGGTGGCTGCCCCTGTGGCTCCGGAGATTGTACCGAGGCCGAGGAGCACAAACCCGTTTGGGGCTGCGAGGCCGAGGGAGGAGGTGTTGGCAGAGAAAGGGCAGGATTGGAAGAAGATTGACGAGCAGCTTGAGTCTGTTAAGCTTAAGGAGAAGGAGGCTGTGGCAGCCGAAGGGGAGTCTTTTGGGAAGAGGAGTTTCGGGATGGGGAGTGGGCGCTCTGGTGACCGCACCGAGGGAGCATGGAGGAAACCTGTAGTGGCTGAGGCTGAGGGGGAGGCTCGTCCTCAGAGTGCTGGAAACGATGAGATTGAGAGTAGGAGCAGCAATTCTGAGGAACTGGAGCCCGAGAATGAGAGTGAGAATGTCACTGAGAACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

423

Amino Acids

45.55

Weight (kDa)

5.22

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-4B PF06273 6 - 204 1.3e-35 Plant specific eukaryotic initiation factor 4B
eIF-4B PF06273 176 - 350 1.1e-15 Plant specific eukaryotic initiation factor 4B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 38, 749
AccBSI CCGCTC 2 cut(s) 283, 613
AccII CGCG 4 cut(s) 277, 279, 312, 425
AccIII TCCGGA 1 cut(s) 910
AclWI GGATC 2 cut(s) 258, 582
AcsI RAATTY 2 cut(s) 358, 826
AcyI GRCGYC 3 cut(s) 39, 54, 459
AfaI GTAC 1 cut(s) 921
AfiI CCNNNNNNNGG 5 cut(s) 42, 204, 453, 949, 1123
AflII CTTAAG 1 cut(s) 1034
AgeI ACCGGT 1 cut(s) 889
AgsI TTSAA 2 cut(s) 733, 738
AhdI GACNNNNNGTC 1 cut(s) 427
AjnI CCWGG 2 cut(s) 41, 219
AluBI AGCT 8 cut(s) 76, 298, 324, 552, 570, 666, 1018, 1033
AluI AGCT 8 cut(s) 76, 298, 324, 552, 570, 666, 1018, 1033
Alw21I GWGCWC 5 cut(s) 66, 78, 300, 572, 938
Alw26I GTCTC 4 cut(s) 24, 528, 797, 875
AlwI GGATC 2 cut(s) 258, 582
Ama87I CYCGRG 1 cut(s) 1235
Aor13HI TCCGGA 1 cut(s) 910
ApaI GGGCCC 2 cut(s) 49, 210
ApeKI GCWGC 7 cut(s) 140, 832, 896, 953, 1015, 1055, 1212
ApoI RAATTY 2 cut(s) 358, 826
AsiGI ACCGGT 1 cut(s) 889
AspLEI GCGC 4 cut(s) 41, 279, 427, 1107
AspS9I GGNCC 8 cut(s) 27, 45, 46, 166, 206, 207, 217, 272
AsuC2I CCSGG 2 cut(s) 36, 347
AsuHPI GGTGA 3 cut(s) 184, 879, 1124
AsuII TTCGAA 2 cut(s) 362, 702
AvaI CYCGRG 1 cut(s) 1235
AvaII GGWCC 1 cut(s) 217
BaeGI GKGCMC 2 cut(s) 49, 210
BanI GGYRCC 2 cut(s) 38, 749
BanII GRGCYC 6 cut(s) 49, 78, 210, 300, 572, 1236
BauI CACGAG 1 cut(s) 245
Bbv12I GWGCWC 5 cut(s) 66, 78, 300, 572, 938
BbvCI CCTCAGC 2 cut(s) 1152, 1158
BbvI GCAGC 7 cut(s) 152, 844, 883, 940, 1027, 1067, 1224
BccI CCATC 2 cut(s) 130, 1087
BceAI ACGGC 3 cut(s) 343, 412, 757
BcgI CGANNNNNNTGC 3 cut(s) 31, 826, 860
BciT130I CCWGG 2 cut(s) 43, 221
BcnI CCSGG 2 cut(s) 36, 347
BcoDI GTCTC 4 cut(s) 24, 528, 797, 875
BfmI CTRYAG 2 cut(s) 807, 1143
BfoI RGCGCY 2 cut(s) 42, 1108
BfrI CTTAAG 1 cut(s) 1034
BglI GCCNNNNNGGC 1 cut(s) 905
Bme1390I CCNGG 4 cut(s) 36, 43, 221, 347
Bme18I GGWCC 1 cut(s) 217
BmeRI GACNNNNNGTC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 1235
BmgT120I GGNCC 8 cut(s) 27, 45, 46, 166, 206, 207, 217, 272
BmiI GGNNCC 7 cut(s) 40, 47, 208, 308, 751, 909, 1233
BmrFI CCNGG 4 cut(s) 36, 43, 221, 347
BmsI GCATC 1 cut(s) 745
BpmI CTGGAG 1 cut(s) 1250
Bpu10I CCTNAGC 3 cut(s) 109, 1152, 1158
Bpu14I TTCGAA 2 cut(s) 362, 702
BpuEI CTTGAG 1 cut(s) 1040
BpuMI CCSGG 2 cut(s) 36, 347
BsaHI GRCGYC 3 cut(s) 39, 54, 459
BsaI GGTCTC 2 cut(s) 528, 875
BsaWI WCCGGW 3 cut(s) 303, 889, 910
BsaXI ACNNNNNCTCC 2 cut(s) 959, 989
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 204, 453, 949, 1123
Bse118I RCCGGY 4 cut(s) 214, 229, 269, 889
Bse1I ACTGG 1 cut(s) 1233
BseAI TCCGGA 1 cut(s) 910
BseBI CCWGG 2 cut(s) 43, 221
BseGI GGATG 3 cut(s) 445, 544, 1098
BseLI CCNNNNNNNGG 5 cut(s) 42, 204, 453, 949, 1123
BseMII CTCAG 6 cut(s) 539, 1143, 1149, 1190, 1212, 1251
BseNI ACTGG 1 cut(s) 1233
BseSI GKGCMC 2 cut(s) 49, 210
BseXI GCAGC 7 cut(s) 152, 844, 883, 940, 1027, 1067, 1224
BseYI CCCAGC 3 cut(s) 102, 552, 666
Bsh1236I CGCG 4 cut(s) 277, 279, 312, 425
Bsh1285I CGRYCG 2 cut(s) 304, 337
BshNI GGYRCC 2 cut(s) 38, 749
BshTI ACCGGT 1 cut(s) 889
BsiEI CGRYCG 2 cut(s) 304, 337
BsiHKAI GWGCWC 5 cut(s) 66, 78, 300, 572, 938
BsiHKCI CYCGRG 1 cut(s) 1235
BsiSI CCGG 9 cut(s) 36, 215, 230, 270, 304, 346, 591, 890, 911
BslFI GGGAC 2 cut(s) 434, 811
BslI CCNNNNNNNGG 5 cut(s) 42, 204, 453, 949, 1123
BsmAI GTCTC 4 cut(s) 24, 528, 797, 875
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 2 cut(s) 434, 811
Bso31I GGTCTC 2 cut(s) 528, 875
BsoBI CYCGRG 1 cut(s) 1235
Bsp119I TTCGAA 2 cut(s) 362, 702
Bsp120I GGGCCC 2 cut(s) 45, 206
Bsp1286I GDGCHC 8 cut(s) 49, 66, 78, 210, 300, 572, 938, 1236
Bsp13I TCCGGA 1 cut(s) 910
Bsp143I GATC 4 cut(s) 93, 250, 334, 587
BspCNI CTCAG 6 cut(s) 538, 1144, 1150, 1189, 1213, 1252
BspEI TCCGGA 1 cut(s) 910
BspFNI CGCG 4 cut(s) 277, 279, 312, 425
BspLI GGNNCC 7 cut(s) 40, 47, 208, 308, 751, 909, 1233
BspPI GGATC 2 cut(s) 258, 582
BspQI GCTCTTC 1 cut(s) 152
BspT104I TTCGAA 2 cut(s) 362, 702
BspT107I GGYRCC 2 cut(s) 38, 749
BspTI CTTAAG 1 cut(s) 1034
BspTNI GGTCTC 2 cut(s) 528, 875
BsrBI CCGCTC 2 cut(s) 283, 613
BsrFI RCCGGY 4 cut(s) 214, 229, 269, 889
BsrI ACTGG 1 cut(s) 1233
BssAI RCCGGY 4 cut(s) 214, 229, 269, 889
BssMI GATC 4 cut(s) 93, 250, 334, 587
BssNI GRCGYC 3 cut(s) 39, 54, 459
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 245
Bst2UI CCWGG 2 cut(s) 43, 221
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 3 cut(s) 152, 671, 1073
BstACI GRCGYC 3 cut(s) 39, 54, 459
BstAFI CTTAAG 1 cut(s) 1034
BstBI TTCGAA 2 cut(s) 362, 702
BstC8I GCNNGC 3 cut(s) 206, 275, 281
BstDEI CTNAG 7 cut(s) 109, 525, 1152, 1158, 1176, 1221, 1260
BstDSI CCRYGG 1 cut(s) 310
BstEII GGTNACC 1 cut(s) 1112
BstF5I GGATG 3 cut(s) 445, 544, 1098
BstFNI CGCG 4 cut(s) 277, 279, 312, 425
BstH2I RGCGCY 2 cut(s) 42, 1108
BstHHI GCGC 4 cut(s) 41, 279, 427, 1107
BstKTI GATC 4 cut(s) 96, 253, 337, 590
BstMAI GTCTC 4 cut(s) 24, 528, 797, 875
BstMBI GATC 4 cut(s) 93, 250, 334, 587
BstMCI CGRYCG 2 cut(s) 304, 337
BstNI CCWGG 2 cut(s) 43, 221
BstPI GGTNACC 1 cut(s) 1112
BstSCI CCNGG 4 cut(s) 34, 41, 219, 345
BstSFI CTRYAG 2 cut(s) 807, 1143
BstSLI GKGCMC 2 cut(s) 49, 210
BstUI CGCG 4 cut(s) 277, 279, 312, 425
BstV1I GCAGC 7 cut(s) 152, 844, 883, 940, 1027, 1067, 1224
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 3 cut(s) 445, 544, 1098
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 3 cut(s) 18, 842, 1257
Cac8I GCNNGC 3 cut(s) 206, 275, 281
CfoI GCGC 4 cut(s) 41, 279, 427, 1107
Cfr10I RCCGGY 4 cut(s) 214, 229, 269, 889
Cfr13I GGNCC 8 cut(s) 27, 45, 46, 166, 206, 207, 217, 272
Cfr42I CCGCGG 1 cut(s) 313
CseI GACGC 4 cut(s) 62, 431, 448, 624
Csp6I GTAC 1 cut(s) 920
CspAI ACCGGT 1 cut(s) 889
CviAII CATG 1 cut(s) 1131
CviQI GTAC 1 cut(s) 920
DdeI CTNAG 7 cut(s) 109, 525, 1152, 1158, 1176, 1221, 1260
DinI GGCGCC 1 cut(s) 40
DpnI GATC 4 cut(s) 95, 252, 336, 589
DpnII GATC 4 cut(s) 93, 250, 334, 587
DriI GACNNNNNGTC 1 cut(s) 427
Eam1104I CTCTTC 3 cut(s) 152, 671, 1073
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 3 cut(s) 152, 671, 1073
EciI GGCGGA 3 cut(s) 121, 452, 551
Ecl136II GAGCTC 3 cut(s) 76, 298, 570
Eco130I CCWWGG 1 cut(s) 23
Eco24I GRGCYC 6 cut(s) 49, 78, 210, 300, 572, 1236
Eco31I GGTCTC 2 cut(s) 528, 875
Eco47I GGWCC 1 cut(s) 217
Eco53kI GAGCTC 3 cut(s) 76, 298, 570
Eco88I CYCGRG 1 cut(s) 1235
Eco91I GGTNACC 1 cut(s) 1112
EcoICRI GAGCTC 3 cut(s) 76, 298, 570
EcoO109I RGGNCCY 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 1112
EcoRI GAATTC 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 41, 219
EcoT14I CCWWGG 1 cut(s) 23
EcoT38I GRGCYC 6 cut(s) 49, 78, 210, 300, 572, 1236
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 1134
FaiI YATR 1 cut(s) 1132
FaqI GGGAC 2 cut(s) 434, 811
FatI CATG 1 cut(s) 1130
FauI CCCGC 5 cut(s) 197, 282, 305, 596, 606
FokI GGATG 3 cut(s) 452, 551, 1105
FriOI GRGCYC 6 cut(s) 49, 78, 210, 300, 572, 1236
GlaI GCGC 4 cut(s) 40, 278, 426, 1106
GsaI CCCAGC 3 cut(s) 106, 556, 670
GsuI CTGGAG 1 cut(s) 1250
HaeII RGCGCY 2 cut(s) 42, 1108
HapII CCGG 9 cut(s) 36, 215, 230, 270, 304, 346, 591, 890, 911
HgaI GACGC 4 cut(s) 62, 431, 448, 624
HhaI GCGC 4 cut(s) 41, 279, 427, 1107
Hin1I GRCGYC 3 cut(s) 39, 54, 459
Hin1II CATG 1 cut(s) 1134
Hin6I GCGC 4 cut(s) 39, 277, 425, 1105
HinP1I GCGC 4 cut(s) 39, 277, 425, 1105
HincII GTYRAC 2 cut(s) 240, 343
HindII GTYRAC 2 cut(s) 240, 343
HindIII AAGCTT 1 cut(s) 1031
HinfI GANTC 6 cut(s) 353, 373, 542, 656, 1022, 1067
HpaII CCGG 9 cut(s) 36, 215, 230, 270, 304, 346, 591, 890, 911
HphI GGTGA 3 cut(s) 184, 879, 1124
Hpy166II GTNNAC 3 cut(s) 192, 240, 343
Hpy188I TCNGA 6 cut(s) 378, 547, 587, 661, 1179, 1222
Hpy188III TCNNGA 4 cut(s) 319, 463, 911, 1090
Hpy8I GTNNAC 3 cut(s) 192, 240, 343
Hpy99I CGWCG 6 cut(s) 56, 433, 452, 464, 640, 881
HpyAV CCTTC 8 cut(s) 166, 208, 526, 616, 709, 765, 1036, 1055
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 832
HpyF3I CTNAG 7 cut(s) 109, 525, 1152, 1158, 1176, 1221, 1260
Hsp92I GRCGYC 3 cut(s) 39, 54, 459
Hsp92II CATG 1 cut(s) 1134
HspAI GCGC 4 cut(s) 39, 277, 425, 1105
KasI GGCGCC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 910
KspI CCGCGG 1 cut(s) 313
Kzo9I GATC 4 cut(s) 93, 250, 334, 587
LguI GCTCTTC 1 cut(s) 152
Lsp1109I GCAGC 7 cut(s) 152, 844, 883, 940, 1027, 1067, 1224
LweI GCATC 1 cut(s) 745
MaeIII GTNAC 3 cut(s) 850, 1112, 1255
MalI GATC 4 cut(s) 95, 252, 336, 589
MbiI CCGCTC 2 cut(s) 283, 613
MboI GATC 4 cut(s) 93, 250, 334, 587
MboII GAAGA 9 cut(s) 163, 166, 169, 478, 570, 688, 1012, 1015, 1090
MhlI GDGCHC 8 cut(s) 49, 66, 78, 210, 300, 572, 938, 1236
MluCI AATT 4 cut(s) 358, 733, 826, 1216
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 4 cut(s) 362, 382, 1031, 1076
MroI TCCGGA 1 cut(s) 910
MseI TTAA 2 cut(s) 1029, 1035
MspA1I CMGCKG 3 cut(s) 290, 312, 552
MspCI CTTAAG 1 cut(s) 1034
MspI CCGG 9 cut(s) 36, 215, 230, 270, 304, 346, 591, 890, 911
MspR9I CCNGG 4 cut(s) 36, 43, 221, 347
MvaI CCWGG 2 cut(s) 43, 221
MvnI CGCG 4 cut(s) 277, 279, 312, 425
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 2 cut(s) 36, 347
NdeII GATC 4 cut(s) 93, 250, 334, 587
NlaIII CATG 1 cut(s) 1134
NlaIV GGNNCC 7 cut(s) 40, 47, 208, 308, 751, 909, 1233
NmeAIII GCCGAG 8 cut(s) 82, 97, 211, 250, 843, 861, 954, 987
NmuCI GTSAC 2 cut(s) 1112, 1255
NspV TTCGAA 2 cut(s) 362, 702
PciSI GCTCTTC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PfeI GAWTC 2 cut(s) 542, 656
PinAI ACCGGT 1 cut(s) 889
Ple19I CGATCG 1 cut(s) 337
PleI GAGTC 4 cut(s) 361, 381, 1030, 1075
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 4 cut(s) 361, 381, 1030, 1075
Psp124BI GAGCTC 3 cut(s) 78, 300, 572
Psp6I CCWGG 2 cut(s) 41, 219
PspEI GGTNACC 1 cut(s) 1112
PspFI CCCAGC 3 cut(s) 102, 552, 666
PspGI CCWGG 2 cut(s) 41, 219
PspN4I GGNNCC 7 cut(s) 40, 47, 208, 308, 751, 909, 1233
PspOMI GGGCCC 2 cut(s) 45, 206
PspPI GGNCC 8 cut(s) 27, 45, 46, 166, 206, 207, 217, 272
PvuI CGATCG 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 552
RsaI GTAC 1 cut(s) 921
RsaNI GTAC 1 cut(s) 920
SacI GAGCTC 3 cut(s) 78, 300, 572
SacII CCGCGG 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 1029, 1035
Sau3AI GATC 4 cut(s) 93, 250, 334, 587
Sau96I GGNCC 8 cut(s) 27, 45, 46, 166, 206, 207, 217, 272
SchI GAGTC 4 cut(s) 362, 382, 1031, 1076
ScrFI CCNGG 4 cut(s) 36, 43, 221, 347
SduI GDGCHC 8 cut(s) 49, 66, 78, 210, 300, 572, 938, 1236
SfaNI GCATC 1 cut(s) 745
SfcI CTRYAG 2 cut(s) 807, 1143
SfoI GGCGCC 1 cut(s) 40
Sfr303I CCGCGG 1 cut(s) 313
SfuI TTCGAA 2 cut(s) 362, 702
SgrAI CRCCGGYG 1 cut(s) 889
SgrBI CCGCGG 1 cut(s) 313
SinI GGWCC 1 cut(s) 217
SmlI CTYRAG 2 cut(s) 1019, 1034
SmoI CTYRAG 2 cut(s) 1019, 1034
Sse9I AATT 4 cut(s) 358, 733, 826, 1216
SspDI GGCGCC 1 cut(s) 38
SstI GAGCTC 3 cut(s) 78, 300, 572
StyD4I CCNGG 4 cut(s) 34, 41, 219, 345
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 13
TasI AATT 4 cut(s) 358, 733, 826, 1216
TfiI GAWTC 2 cut(s) 542, 656
Tru1I TTAA 2 cut(s) 1029, 1035
Tru9I TTAA 2 cut(s) 1029, 1035
TscAI CASTG 3 cut(s) 18, 849, 1264
TseFI GTSAC 2 cut(s) 1112, 1255
TseI GCWGC 7 cut(s) 140, 832, 896, 953, 1015, 1055, 1212
Tsp45I GTSAC 2 cut(s) 1112, 1255
TspDTI ATGAA 1 cut(s) 555
TspGWI ACGGA 2 cut(s) 428, 815
TspRI CASTG 3 cut(s) 18, 849, 1264
Vha464I CTTAAG 1 cut(s) 1034
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 2 cut(s) 358, 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.