AT4G39100

Bromo adjacent homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005976
Physical Location & Seq
Reverse (-)
18217629 .. 18220324
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39100.1

Sequence Viewer

Length: 687 bp
ATGCCCAAGCAAAAAGCTCCAAGGAAGCAGCTCAAGTCCTATAAACTCAAACACATCAACAAGAGTATTCAAGAGGGAGATGCTGTGTTGATGCGGTCGTCGGAGCCTGGAAAACCGTCGTACGTAGCGAGGGTAGAGGCGATCGAGACGGACGCGCGTGGATCGCACGCGAAAGTTCGTGTGAGGTGGTATTATCGCCCTGAGGAATCTATCGGAGGGAGGAGACAATTCCATGGAGCCAAGGAGGTTTTTCTCTCTGACCACTTCGATTTTCAAAGCGCCGATACGATTGAAGGAAAGTGTAAGGTTCACAGTTTCAGTAGCTACACCAAACTTGACTCTGTTGGAAACGACGACTTCTTCTGTCGTTTCGAGTACAATTCCACTACCGGCGCGTTTGATCCTGACAGAGTCACCGTGTTCTGCAAGTGTGAGATGCCGTATAACCCAGATGACTTGATGGTGCAATGCGAGGAGTGTTCTGAGTGGTTTCATCCTTCTTGTATAGGAACAACAATAGAGGAAGCTAAAAAGCCAGATAACTTCTACTGCGAAGAGTGTTCCCCACAACAGCAGAATTTGCACAACTCTAATTCAACTTCCAATAACAGAGATGCTAAGGTGAATGGAAAGCGCAGCCTGGAGGTAACTAAATCGAAGAACAAACACACTAAGCGACCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

228

Amino Acids

26.12

Weight (kDa)

8.5

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 23 - 135 1e-23 BAH domain
PHD_5 PF20826 140 - 187 6.4e-06 PhD finger domain
PHD PF00628 142 - 187 2.2e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 155, 157, 170, 395
AciI CCGC 1 cut(s) 94
AclWI GGATC 2 cut(s) 169, 395
AcsI RAATTY 1 cut(s) 577
AfaI GTAC 2 cut(s) 122, 377
AgsI TTSAA 4 cut(s) 71, 275, 293, 597
AjnI CCWGG 3 cut(s) 106, 639, 679
AluBI AGCT 4 cut(s) 17, 31, 324, 527
AluI AGCT 4 cut(s) 17, 31, 324, 527
Alw26I GTCTC 2 cut(s) 140, 217
AlwI GGATC 2 cut(s) 169, 395
ApeKI GCWGC 2 cut(s) 28, 636
ApoI RAATTY 1 cut(s) 577
AspLEI GCGC 4 cut(s) 157, 281, 395, 636
AsuHPI GGTGA 2 cut(s) 406, 634
AxyI CCTNAGG 1 cut(s) 201
BbvI GCAGC 2 cut(s) 40, 648
BccI CCATC 1 cut(s) 454
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 3 cut(s) 108, 641, 681
BcoDI GTCTC 2 cut(s) 140, 217
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 2 cut(s) 29, 637
BlsI GCNGC 2 cut(s) 30, 638
Bme1390I CCNGG 3 cut(s) 108, 641, 681
BmiI GGNNCC 2 cut(s) 105, 238
BmrFI CCNGG 3 cut(s) 108, 641, 681
BmsI GCATC 4 cut(s) 70, 81, 426, 604
BpmI CTGGAG 1 cut(s) 662
Bpu10I CCTNAGC 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 17
BsaAI YACGTR 1 cut(s) 124
BsaJI CCNNGG 3 cut(s) 20, 232, 240
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bse118I RCCGGY 1 cut(s) 389
Bse21I CCTNAGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 473
BseBI CCWGG 3 cut(s) 108, 641, 681
BseDI CCNNGG 3 cut(s) 20, 232, 240
BseGI GGATG 1 cut(s) 493
BseMI GCAATG 1 cut(s) 473
BseMII CTCAG 2 cut(s) 192, 474
BseRI GAGGAG 2 cut(s) 235, 488
BseXI GCAGC 2 cut(s) 40, 648
Bsh1236I CGCG 4 cut(s) 155, 157, 170, 395
Bsh1285I CGRYCG 2 cut(s) 98, 144
BsiEI CGRYCG 2 cut(s) 98, 144
BsiSI CCGG 1 cut(s) 390
BsiWI CGTACG 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 140, 217
BsmBI CGTCTC 1 cut(s) 140
Bsp143I GATC 3 cut(s) 141, 161, 400
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 193, 475
BspFNI CGCG 4 cut(s) 155, 157, 170, 395
BspLI GGNNCC 2 cut(s) 105, 238
BspPI GGATC 2 cut(s) 169, 395
BsrDI GCAATG 1 cut(s) 473
BsrFI RCCGGY 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 3 cut(s) 20, 232, 240
BssMI GATC 3 cut(s) 141, 161, 400
BssT1I CCWWGG 3 cut(s) 20, 232, 240
Bst2UI CCWGG 3 cut(s) 108, 641, 681
Bst4CI ACNGT 3 cut(s) 117, 314, 418
Bst6I CTCTTC 1 cut(s) 549
BstAPI GCANNNNNTGC 1 cut(s) 580
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 201, 483, 618, 672
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 4 cut(s) 155, 157, 170, 395
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 4 cut(s) 157, 281, 395, 636
BstKTI GATC 3 cut(s) 144, 164, 403
BstMAI GTCTC 2 cut(s) 140, 217
BstMBI GATC 3 cut(s) 141, 161, 400
BstMCI CGRYCG 2 cut(s) 98, 144
BstMWI GCNNNNNNNGC 2 cut(s) 163, 580
BstNI CCWGG 3 cut(s) 108, 641, 681
BstSCI CCNGG 3 cut(s) 106, 639, 679
BstSNI TACGTA 1 cut(s) 124
BstUI CGCG 4 cut(s) 155, 157, 170, 395
BstV1I GCAGC 2 cut(s) 40, 648
Bsu36I CCTNAGG 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 4 cut(s) 157, 281, 395, 636
Cfr10I RCCGGY 1 cut(s) 389
CseI GACGC 1 cut(s) 161
CsiI ACCWGGT 1 cut(s) 679
Csp6I GTAC 2 cut(s) 121, 376
CviAII CATG 1 cut(s) 233
CviJI RGCY 8 cut(s) 17, 31, 106, 239, 324, 527, 535, 639
CviKI_1 RGCY 8 cut(s) 17, 31, 106, 239, 324, 527, 535, 639
CviQI GTAC 2 cut(s) 121, 376
DdeI CTNAG 4 cut(s) 201, 483, 618, 672
DpnI GATC 3 cut(s) 143, 163, 402
DpnII GATC 3 cut(s) 141, 161, 400
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco105I TACGTA 1 cut(s) 124
Eco130I CCWWGG 3 cut(s) 20, 232, 240
Eco81I CCTNAGG 1 cut(s) 201
EcoRII CCWGG 3 cut(s) 106, 639, 679
EcoT14I CCWWGG 3 cut(s) 20, 232, 240
ErhI CCWWGG 3 cut(s) 20, 232, 240
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 1 cut(s) 236
FaiI YATR 4 cut(s) 42, 234, 444, 506
FatI CATG 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 29, 637
FokI GGATG 1 cut(s) 480
Fsp4HI GCNGC 2 cut(s) 29, 637
GlaI GCGC 4 cut(s) 156, 280, 394, 635
GluI GCNGC 2 cut(s) 29, 637
GsuI CTGGAG 1 cut(s) 662
HaeII RGCGCY 1 cut(s) 282
HapII CCGG 1 cut(s) 390
HgaI GACGC 1 cut(s) 161
HhaI GCGC 4 cut(s) 157, 281, 395, 636
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 4 cut(s) 155, 279, 393, 634
HinP1I GCGC 4 cut(s) 155, 279, 393, 634
HinfI GANTC 3 cut(s) 206, 338, 411
HpaII CCGG 1 cut(s) 390
HphI GGTGA 2 cut(s) 406, 634
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 4 cut(s) 103, 215, 259, 484
Hpy188III TCNNGA 3 cut(s) 71, 145, 404
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 3 cut(s) 103, 121, 356
HpyAV CCTTC 2 cut(s) 287, 507
HpyCH4III ACNGT 3 cut(s) 117, 314, 418
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 426, 466, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 580
HpyF3I CTNAG 4 cut(s) 201, 483, 618, 672
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 4 cut(s) 155, 279, 393, 634
Kzo9I GATC 3 cut(s) 141, 161, 400
LmnI GCTCC 3 cut(s) 22, 103, 236
Lsp1109I GCAGC 2 cut(s) 40, 648
LweI GCATC 4 cut(s) 70, 81, 426, 604
MabI ACCWGGT 1 cut(s) 679
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 412, 646
MalI GATC 3 cut(s) 143, 163, 402
MboI GATC 3 cut(s) 141, 161, 400
MboII GAAGA 3 cut(s) 352, 566, 670
MluCI AATT 4 cut(s) 227, 379, 577, 592
MlyI GAGTC 2 cut(s) 332, 420
MmeI TCCRAC 2 cut(s) 81, 325
MseI TTAA 1 cut(s) 685
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 3 cut(s) 108, 641, 681
MvaI CCWGG 3 cut(s) 108, 641, 681
MvnI CGCG 4 cut(s) 155, 157, 170, 395
MwoI GCNNNNNNNGC 2 cut(s) 163, 580
NcoI CCATGG 1 cut(s) 232
NdeII GATC 3 cut(s) 141, 161, 400
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 105, 238
NmuCI GTSAC 1 cut(s) 412
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PfeI GAWTC 1 cut(s) 206
Pfl23II CGTACG 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 2 cut(s) 30, 638
Ple19I CGATCG 1 cut(s) 144
PleI GAGTC 2 cut(s) 332, 419
PpsI GAGTC 2 cut(s) 332, 419
Ppu21I YACGTR 1 cut(s) 124
Psp6I CCWGG 3 cut(s) 106, 639, 679
PspGI CCWGG 3 cut(s) 106, 639, 679
PspLI CGTACG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 105, 238
PsyI GACNNNGTC 1 cut(s) 410
PvuI CGATCG 1 cut(s) 144
RsaI GTAC 2 cut(s) 122, 377
RsaNI GTAC 2 cut(s) 121, 376
SaqAI TTAA 1 cut(s) 685
SatI GCNGC 2 cut(s) 29, 637
Sau3AI GATC 3 cut(s) 141, 161, 400
SchI GAGTC 2 cut(s) 332, 420
ScrFI CCNGG 3 cut(s) 108, 641, 681
SexAI ACCWGGT 1 cut(s) 679
SfaNI GCATC 4 cut(s) 70, 81, 426, 604
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SnaBI TACGTA 1 cut(s) 124
Sse9I AATT 4 cut(s) 227, 379, 577, 592
SsiI CCGC 1 cut(s) 94
StyD4I CCNGG 3 cut(s) 106, 639, 679
StyI CCWWGG 3 cut(s) 20, 232, 240
TaaI ACNGT 3 cut(s) 117, 314, 418
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 144, 267, 372, 656
TasI AATT 4 cut(s) 227, 379, 577, 592
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 685
Tru9I TTAA 1 cut(s) 685
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 28, 636
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 164
Tth111I GACNNNGTC 1 cut(s) 410
XapI RAATTY 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.