RLG00000014095

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005976
Physical Location & Seq
Reverse (-)
46989073 .. 46992166
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014095

Sequence Viewer

Length: 582 bp
ATGGCGAAACCAAAAGCTCCAAGACAAACCCTCAACTCCTACACTGTCAAACCCATCAACAAGACCGTCAGAGCCGGCGACTGCGTTCTGATGCGGCCGTCGGAGCCGGGGAAGCCGTCCTACGTGGCGAAGATCGAGCGGATCGAGGCGGACAGCCGCGGAGCCAACGTGAAAGTGCACGTGCGGTGGTATTACCGGCCGGAGGAGTCGATCGGCGGCCGGAGGCAGTTCCATGGATCCAAGGAGGTTTTTCTCTCCGACCACCACGACGTTCAGAGCGCCGACACCATAGAGGGGAAGTGTACGGTGCACACGTTCAGGGGATATAGCAAGCTCGACGCAGTTGGAAACGACGACTTCTTTTGTCGTTTTGAGTATAATTCCACTACTGGTTCCTTCAATCCTGACAGAGTCGCCGTGTTTCATCCTGCTTGTATAGACATGAGTGCAGAGGAAGCTGAAAGACTGGACCACTTTTTTTGTGAAGGTTGTTCTCCCGAGGGACAAAAGAAGTTGGAGAATTCGCATGCTGTCTCCAGACAGTTGGATACAAAGGTGGAGACAAAACGTCGCCGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

194

Amino Acids

21.98

Weight (kDa)

8.88

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 22 - 136 1.2e-24 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 1 cut(s) 159
AciI CCGC 7 cut(s) 94, 139, 149, 157, 159, 184, 216
AclWI GGATC 3 cut(s) 149, 231, 244
AcoI YGGCCR 3 cut(s) 95, 197, 217
AcsI RAATTY 1 cut(s) 520
AcvI CACGTG 1 cut(s) 181
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 2 cut(s) 202, 294
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 400
AhdI GACNNNNNGTC 1 cut(s) 567
AluBI AGCT 3 cut(s) 17, 334, 458
AluI AGCT 3 cut(s) 17, 334, 458
Alw21I GWGCWC 2 cut(s) 180, 312
Alw26I GTCTC 2 cut(s) 538, 554
Alw44I GTGCAC 2 cut(s) 176, 308
AlwI GGATC 3 cut(s) 149, 231, 244
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 3 cut(s) 95, 197, 217
ApaLI GTGCAC 2 cut(s) 176, 308
ApoI RAATTY 1 cut(s) 520
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 2 cut(s) 180, 312
BaeI ACNNNNGTAYC 2 cut(s) 540, 573
BamHI GGATCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbrPI CACGTG 1 cut(s) 181
Bbv12I GWGCWC 2 cut(s) 180, 312
BccI CCATC 1 cut(s) 62
BceAI ACGGC 3 cut(s) 82, 100, 401
BciVI GTATCC 1 cut(s) 541
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 538, 554
BfoI RGCGCY 1 cut(s) 282
BfuI GTATCC 1 cut(s) 541
BisI GCNGC 3 cut(s) 95, 157, 217
BlsI GCNGC 3 cut(s) 96, 158, 218
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 469
BmeRI GACNNNNNGTC 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 4 cut(s) 105, 163, 238, 394
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 520
BpuMI CCSGG 1 cut(s) 108
BsaAI YACGTR 2 cut(s) 124, 181
BsaJI CCNNGG 5 cut(s) 107, 157, 232, 240, 498
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 294
Bse118I RCCGGY 2 cut(s) 74, 195
Bse1I ACTGG 2 cut(s) 394, 471
BseDI CCNNGG 5 cut(s) 107, 157, 232, 240, 498
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 2 cut(s) 202, 294
BseNI ACTGG 2 cut(s) 394, 471
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 2 cut(s) 180, 312
BseX3I CGGCCG 3 cut(s) 95, 197, 217
BsgI GTGCAG 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 4 cut(s) 98, 200, 213, 220
BshFI GGCC 3 cut(s) 97, 199, 219
BsiEI CGRYCG 4 cut(s) 98, 200, 213, 220
BsiHKAI GWGCWC 2 cut(s) 180, 312
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 6 cut(s) 75, 107, 196, 200, 220, 574
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 2 cut(s) 202, 294
BsmAI GTCTC 2 cut(s) 538, 554
BsmFI GGGAC 1 cut(s) 516
BsnI GGCC 3 cut(s) 97, 199, 219
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 2 cut(s) 180, 312
Bsp143I GATC 4 cut(s) 132, 141, 210, 236
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 7 cut(s) 94, 139, 149, 157, 159, 184, 216
BspANI GGCC 3 cut(s) 97, 199, 219
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 4 cut(s) 105, 163, 238, 394
BspPI GGATC 3 cut(s) 149, 231, 244
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 74, 195
BsrI ACTGG 2 cut(s) 394, 471
BssAI RCCGGY 2 cut(s) 74, 195
BssECI CCNNGG 5 cut(s) 107, 157, 232, 240, 498
BssMI GATC 4 cut(s) 132, 141, 210, 236
BssT1I CCWWGG 2 cut(s) 232, 240
Bst4CI ACNGT 4 cut(s) 46, 67, 307, 543
BstBAI YACGTR 2 cut(s) 124, 181
BstC8I GCNNGC 3 cut(s) 76, 332, 528
BstDSI CCRYGG 2 cut(s) 157, 232
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 135, 144, 213, 239
BstMAI GTCTC 2 cut(s) 538, 554
BstMBI GATC 4 cut(s) 132, 141, 210, 236
BstMCI CGRYCG 4 cut(s) 98, 200, 213, 220
BstMWI GCNNNNNNNGC 3 cut(s) 103, 112, 455
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 2 cut(s) 180, 312
BstUI CGCG 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 544
BstYI RGATCY 1 cut(s) 236
BstZI CGGCCG 3 cut(s) 95, 197, 217
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 3 cut(s) 97, 199, 219
BtgI CCRYGG 2 cut(s) 157, 232
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 76, 332, 528
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 74, 195
Cfr13I GGNCC 1 cut(s) 469
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 303
CspCI CAANNNNNGTGG 2 cut(s) 461, 496
CviAII CATG 3 cut(s) 233, 442, 527
CviQI GTAC 1 cut(s) 303
DpnI GATC 4 cut(s) 134, 143, 212, 238
DpnII GATC 4 cut(s) 132, 141, 210, 236
DriI GACNNNNNGTC 1 cut(s) 567
EaeI YGGCCR 3 cut(s) 95, 197, 217
EagI CGGCCG 3 cut(s) 95, 197, 217
Eam1105I GACNNNNNGTC 1 cut(s) 567
EciI GGCGGA 1 cut(s) 164
EclXI CGGCCG 3 cut(s) 95, 197, 217
Eco130I CCWWGG 2 cut(s) 232, 240
Eco47I GGWCC 1 cut(s) 469
Eco52I CGGCCG 3 cut(s) 95, 197, 217
Eco72I CACGTG 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 520
EcoT14I CCWWGG 2 cut(s) 232, 240
ErhI CCWWGG 2 cut(s) 232, 240
FaeI CATG 3 cut(s) 236, 445, 530
FaiI YATR 7 cut(s) 234, 290, 327, 378, 437, 443, 528
FaqI GGGAC 1 cut(s) 516
FatI CATG 3 cut(s) 232, 441, 526
Fnu4HI GCNGC 3 cut(s) 95, 157, 217
FokI GGATG 1 cut(s) 411
Fsp4HI GCNGC 3 cut(s) 95, 157, 217
GlaI GCGC 1 cut(s) 280
GluI GCNGC 3 cut(s) 95, 157, 217
GsuI CTGGAG 1 cut(s) 520
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 97, 199, 219
HapII CCGG 6 cut(s) 75, 107, 196, 200, 220, 574
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 281
Hin1II CATG 3 cut(s) 236, 445, 530
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 2 cut(s) 206, 411
HpaII CCGG 6 cut(s) 75, 107, 196, 200, 220, 574
Hpy166II GTNNAC 3 cut(s) 178, 303, 310
Hpy188I TCNGA 5 cut(s) 71, 90, 103, 259, 276
Hpy188III TCNNGA 3 cut(s) 404, 497, 537
Hpy8I GTNNAC 3 cut(s) 178, 303, 310
Hpy99I CGWCG 5 cut(s) 103, 272, 341, 356, 573
HpyAV CCTTC 2 cut(s) 406, 479
HpyCH4III ACNGT 4 cut(s) 46, 67, 307, 543
HpyCH4IV ACGT 6 cut(s) 123, 168, 180, 270, 314, 568
HpyCH4V TGCA 3 cut(s) 178, 310, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 112, 455
HpySE526I ACGT 6 cut(s) 123, 168, 180, 270, 314, 568
Hsp92II CATG 3 cut(s) 236, 445, 530
HspAI GCGC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 4 cut(s) 132, 141, 210, 236
LmnI GCTCC 3 cut(s) 22, 103, 161
LweI GCATC 1 cut(s) 81
MaeII ACGT 6 cut(s) 123, 168, 180, 270, 314, 568
MalI GATC 4 cut(s) 134, 143, 212, 238
MbiI CCGCTC 1 cut(s) 139
MboI GATC 4 cut(s) 132, 141, 210, 236
MboII GAAGA 1 cut(s) 142
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 2 cut(s) 180, 312
MluCI AATT 2 cut(s) 379, 520
MlyI GAGTC 2 cut(s) 215, 420
MmeI TCCRAC 5 cut(s) 81, 282, 325, 495, 525
MnlI CCTC 9 cut(s) 41, 139, 196, 216, 238, 286, 445, 493, 570
MroNI GCCGGC 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 6 cut(s) 75, 107, 196, 200, 220, 574
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 103, 112, 455
NaeI GCCGGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 232
NdeII GATC 4 cut(s) 132, 141, 210, 236
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 3 cut(s) 236, 445, 530
NlaIV GGNNCC 4 cut(s) 105, 163, 238, 394
NspI RCATGY 1 cut(s) 530
PaeI GCATGC 1 cut(s) 530
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 311
PdiI GCCGGC 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 3 cut(s) 96, 158, 218
Ple19I CGATCG 1 cut(s) 213
PleI GAGTC 2 cut(s) 214, 419
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 2 cut(s) 214, 419
Ppu21I YACGTR 2 cut(s) 124, 181
PspCI CACGTG 1 cut(s) 181
PspN4I GGNNCC 4 cut(s) 105, 163, 238, 394
PspPI GGNCC 1 cut(s) 469
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 410
PvuI CGATCG 1 cut(s) 213
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SacII CCGCGG 1 cut(s) 160
SatI GCNGC 3 cut(s) 95, 157, 217
Sau3AI GATC 4 cut(s) 132, 141, 210, 236
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 2 cut(s) 215, 420
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 2 cut(s) 180, 312
SfaNI GCATC 1 cut(s) 81
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 1 cut(s) 469
SphI GCATGC 1 cut(s) 530
Sse9I AATT 2 cut(s) 379, 520
SsiI CCGC 7 cut(s) 94, 139, 149, 157, 159, 184, 216
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 232, 240
TaaI ACNGT 4 cut(s) 46, 67, 307, 543
TaiI ACGT 6 cut(s) 126, 171, 183, 273, 317, 571
TaqI TCGA 4 cut(s) 135, 144, 209, 336
TasI AATT 2 cut(s) 379, 520
TauI GCSGC 3 cut(s) 97, 159, 219
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 413
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 410
VneI GTGCAC 2 cut(s) 176, 308
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 1 cut(s) 520
XceI RCATGY 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.