Rh6DG131900

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005976
Physical Location & Seq
Forward (+)
18758705 .. 18763204
4500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG131900.1

Sequence Viewer

Length: 558 bp
ATGGCGAAACCAAAAGCTCCGAGACAAACCCTCAACTCCTACACTGTCAAACCCATCAACAAGACCGTCAGAGCCGGCGACTGCGTTCTGATGCGGCCGTCGGAGCCGGGGAAGCCGTCCTACGTCGCGAAGATCGAGCGGATCGAGGCGGACAGCCGCGGAGCCAACGTCAAGGTCCACGTGCGGTGGTACTACCGGCCGGAGGAATCGATCGGCGGCCGGAGACAGTTCCATGGATCCAAGGAGGTTTTTCTCTCCGACCACCACGACGTGCAGAGCGCCGACACCATAGAGGGCAAGTGTACGGTGCACACGTTCAGGGGGTATAGCAAGCTCGACGCGGTTGGAAACGACGACTTCTTTTGTCGTTTCGAGTATAATTCCACTACTGGTTCCTTCAATCCTGACCGAGTCGCCGTGTATGTGATGTTCACCATTTCTCCAATTGTTTTTTCTTTCTTTTATATTTTGGAATCAAATTGGCAGTGGAATTGTTGCTGCATACTCAGTTGTTCTTCTTTAATCCATGCGATTCGGGTAGTAGTGTATTGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

185

Amino Acids

21.2

Weight (kDa)

8.83

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 22 - 136 1.1e-24 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 3 cut(s) 128, 159, 341
AciI CCGC 8 cut(s) 94, 139, 149, 157, 159, 184, 216, 341
AclWI GGATC 3 cut(s) 149, 231, 244
AcoI YGGCCR 3 cut(s) 95, 197, 217
AcvI CACGTG 1 cut(s) 181
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 2 cut(s) 191, 304
AfiI CCNNNNNNNGG 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 400
AjiI CACGTC 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AluBI AGCT 2 cut(s) 17, 334
AluI AGCT 2 cut(s) 17, 334
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 2 cut(s) 16, 217
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 3 cut(s) 149, 231, 244
AoxI GGCC 3 cut(s) 95, 197, 217
ApaLI GTGCAC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 312
BamHI GGATCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbrPI CACGTG 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 485
BccI CCATC 1 cut(s) 62
BceAI ACGGC 3 cut(s) 82, 100, 401
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 16, 217
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 4 cut(s) 95, 157, 217, 499
BlsI GCNGC 4 cut(s) 96, 158, 218, 500
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 4 cut(s) 105, 163, 238, 394
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 181
BsaJI CCNNGG 4 cut(s) 107, 157, 232, 240
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 424, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 2 cut(s) 74, 195
Bse1I ACTGG 1 cut(s) 394
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 4 cut(s) 107, 157, 232, 240
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 520
BseNI ACTGG 1 cut(s) 394
BseSI GKGCMC 1 cut(s) 312
BseX3I CGGCCG 3 cut(s) 95, 197, 217
BseXI GCAGC 1 cut(s) 485
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 3 cut(s) 128, 159, 341
Bsh1285I CGRYCG 4 cut(s) 98, 200, 213, 220
BshFI GGCC 3 cut(s) 97, 199, 219
BshVI ATCGAT 1 cut(s) 209
BsiEI CGRYCG 4 cut(s) 98, 200, 213, 220
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 5 cut(s) 75, 107, 196, 200, 220
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 2 cut(s) 16, 217
BsnI GGCC 3 cut(s) 97, 199, 219
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 4 cut(s) 132, 141, 210, 236
Bsp19I CCATGG 1 cut(s) 232
Bsp68I TCGCGA 1 cut(s) 128
BspACI CCGC 8 cut(s) 94, 139, 149, 157, 159, 184, 216, 341
BspANI GGCC 3 cut(s) 97, 199, 219
BspCNI CTCAG 1 cut(s) 519
BspDI ATCGAT 1 cut(s) 209
BspFNI CGCG 3 cut(s) 128, 159, 341
BspLI GGNNCC 4 cut(s) 105, 163, 238, 394
BspPI GGATC 3 cut(s) 149, 231, 244
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 74, 195
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 2 cut(s) 74, 195
BssECI CCNNGG 4 cut(s) 107, 157, 232, 240
BssMI GATC 4 cut(s) 132, 141, 210, 236
BssT1I CCWWGG 2 cut(s) 232, 240
Bst4CI ACNGT 4 cut(s) 46, 67, 228, 307
BstBAI YACGTR 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 76, 332
BstDEI CTNAG 1 cut(s) 506
BstDSI CCRYGG 2 cut(s) 157, 232
BstFNI CGCG 3 cut(s) 128, 159, 341
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 135, 144, 213, 239
BstMAI GTCTC 2 cut(s) 16, 217
BstMBI GATC 4 cut(s) 132, 141, 210, 236
BstMCI CGRYCG 4 cut(s) 98, 200, 213, 220
BstMWI GCNNNNNNNGC 2 cut(s) 103, 112
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 3 cut(s) 128, 159, 341
BstV1I GCAGC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BstZI CGGCCG 3 cut(s) 95, 197, 217
Bsu15I ATCGAT 1 cut(s) 209
BsuRI GGCC 3 cut(s) 97, 199, 219
BsuTUI ATCGAT 1 cut(s) 209
BtgI CCRYGG 2 cut(s) 157, 232
BtrI CACGTC 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 2 cut(s) 42, 491
BtuMI TCGCGA 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 76, 332
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 74, 195
Cfr13I GGNCC 1 cut(s) 175
Cfr42I CCGCGG 1 cut(s) 160
ClaI ATCGAT 1 cut(s) 209
CseI GACGC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 190, 303
CviAII CATG 2 cut(s) 233, 527
CviQI GTAC 2 cut(s) 190, 303
DdeI CTNAG 1 cut(s) 506
DpnI GATC 4 cut(s) 134, 143, 212, 238
DpnII GATC 4 cut(s) 132, 141, 210, 236
DraIII CACNNNGTG 1 cut(s) 271
EaeI YGGCCR 3 cut(s) 95, 197, 217
EagI CGGCCG 3 cut(s) 95, 197, 217
EciI GGCGGA 1 cut(s) 164
EclXI CGGCCG 3 cut(s) 95, 197, 217
Eco130I CCWWGG 2 cut(s) 232, 240
Eco47I GGWCC 1 cut(s) 175
Eco52I CGGCCG 3 cut(s) 95, 197, 217
Eco72I CACGTG 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 232, 240
ErhI CCWWGG 2 cut(s) 232, 240
FaeI CATG 2 cut(s) 236, 530
FaiI YATR 8 cut(s) 234, 290, 327, 378, 423, 465, 503, 528
FatI CATG 2 cut(s) 232, 526
Fnu4HI GCNGC 4 cut(s) 95, 157, 217, 499
Fsp4HI GCNGC 4 cut(s) 95, 157, 217, 499
GlaI GCGC 1 cut(s) 280
GluI GCNGC 4 cut(s) 95, 157, 217, 499
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 97, 199, 219
HapII CCGG 5 cut(s) 75, 107, 196, 200, 220
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 281
Hin1II CATG 2 cut(s) 236, 530
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 4 cut(s) 206, 411, 473, 532
HpaII CCGG 5 cut(s) 75, 107, 196, 200, 220
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 4 cut(s) 178, 303, 310, 432
Hpy188I TCNGA 5 cut(s) 21, 71, 90, 103, 259
Hpy188III TCNNGA 2 cut(s) 127, 404
Hpy8I GTNNAC 4 cut(s) 178, 303, 310, 432
Hpy99I CGWCG 5 cut(s) 103, 128, 272, 341, 356
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 4 cut(s) 46, 67, 228, 307
HpyCH4IV ACGT 5 cut(s) 123, 168, 180, 270, 314
HpyCH4V TGCA 3 cut(s) 274, 310, 501
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 112
HpyF3I CTNAG 1 cut(s) 506
HpySE526I ACGT 5 cut(s) 123, 168, 180, 270, 314
Hsp92II CATG 2 cut(s) 236, 530
HspAI GCGC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 4 cut(s) 132, 141, 210, 236
LmnI GCTCC 3 cut(s) 22, 103, 161
LpnPI CCDG 8 cut(s) 88, 120, 209, 213, 233, 304, 375, 417
Lsp1109I GCAGC 1 cut(s) 485
LweI GCATC 1 cut(s) 81
MaeII ACGT 5 cut(s) 123, 168, 180, 270, 314
MalI GATC 4 cut(s) 134, 143, 212, 238
MbiI CCGCTC 1 cut(s) 139
MboI GATC 4 cut(s) 132, 141, 210, 236
MboII GAAGA 2 cut(s) 142, 507
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 5 cut(s) 379, 444, 478, 490, 553
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 3 cut(s) 81, 282, 325
MnlI CCTC 5 cut(s) 41, 139, 196, 238, 286
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 5 cut(s) 75, 107, 196, 200, 220
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 444
MvnI CGCG 3 cut(s) 128, 159, 341
MwoI GCNNNNNNNGC 2 cut(s) 103, 112
NaeI GCCGGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 232
NdeII GATC 4 cut(s) 132, 141, 210, 236
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 236, 530
NlaIV GGNNCC 4 cut(s) 105, 163, 238, 394
NruI TCGCGA 1 cut(s) 128
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 141, 311
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 206, 473, 532
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 4 cut(s) 96, 158, 218, 500
Ple19I CGATCG 1 cut(s) 213
PleI GAGTC 1 cut(s) 419
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 1 cut(s) 419
Ppu21I YACGTR 1 cut(s) 181
PspCI CACGTG 1 cut(s) 181
PspN4I GGNNCC 4 cut(s) 105, 163, 238, 394
PspPI GGNCC 1 cut(s) 175
PsrI GAACNNNNNNTAC 2 cut(s) 413, 445
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 410
PvuI CGATCG 1 cut(s) 213
RruI TCGCGA 1 cut(s) 128
RsaI GTAC 2 cut(s) 191, 304
RsaNI GTAC 2 cut(s) 190, 303
SacII CCGCGG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 4 cut(s) 95, 157, 217, 499
Sau3AI GATC 4 cut(s) 132, 141, 210, 236
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 312
SetI ASST 9 cut(s) 19, 126, 171, 177, 183, 249, 273, 317, 336
SfaNI GCATC 1 cut(s) 81
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 1 cut(s) 175
Sse9I AATT 5 cut(s) 379, 444, 478, 490, 553
SsiI CCGC 8 cut(s) 94, 139, 149, 157, 159, 184, 216, 341
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 232, 240
TaaI ACNGT 4 cut(s) 46, 67, 228, 307
TaiI ACGT 5 cut(s) 126, 171, 183, 273, 317
TaqI TCGA 5 cut(s) 135, 144, 209, 336, 372
TaqII GACCGA 1 cut(s) 423
TasI AATT 5 cut(s) 379, 444, 478, 490, 553
TauI GCSGC 3 cut(s) 97, 159, 219
TfiI GAWTC 3 cut(s) 206, 473, 532
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 2 cut(s) 49, 491
TseI GCWGC 1 cut(s) 498
TspRI CASTG 2 cut(s) 49, 491
Tth111I GACNNNGTC 1 cut(s) 410
VneI GTGCAC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.