Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005976

Physical Location & Seq

Genomic Coordinates Reverse (-)

12268450 .. 12273326

Gene Structure 4877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G089400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCAAACCAAAAGCTGCGAGACGAACACTCGACTCTTACACTGTCAAGCACATCAACAAGACCGTCAGAGCTGGGGACTGTGTGCTGATGCGGCCGTCGGATTCCGGGAAGCCGTCGTACGTGGCGAAAATCGAGCGGATCGAGGCGGACAGCCGCGGCTCCAACGTGAAGGTGCACGTGCGCTGGTACTATCGGCCGGAGGAGTCGATTGGCGGCCGGCGACAGTTTCACGGCTCCAAGGAGGTGTTTCTCTCCGATCACCACGACGTTCAGAGCGCCGACACCATCGAGGCTAAGTGTACGGTGCACACCTTCAAGAGCTATACCAAGCTCGACGCTGTTGGGAACGACGACTTCTTCTGTCGTTTCGAGTATAATTCCTCAACCGGAGCTTTCAATCCTGACCGTGTCGCTGTGTATTGCAAATGTGAGATGCCTTACAACCCTGATGACCTCATGGTTCAGTGTGAAGGTTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGAATGCAGAGGAGGCTAAAAGACTTGACCACTTCTTCTGTGAAGGCTGTTCTTCCGAGGGTCAAAAGAAGTTGCAGAATTCCCATACTGCTTCTAAACACCCTGATACAAAGGTGGATACAAAACGGCGTCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

217

Amino Acids

24.7

Weight (kDa)

8.48

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39100 AT4G39100
fragaria_vesca	FvH4_2g09891 FvH4_2g09891
malus_domestica	MD05G1059600.v1.1 MD10G1067700.v1.1
prunus_persica	Prupe.8G089400_v2.0.a1 Prupe.8G089400_v2.0.a1 Prupe.8G089400_v2.0.a1
pyrus_communis	pycom05g05090 pycom10g05350
rosa_chinensis	RchiOBHm_Chr6g0266611 RchiOBHm_Chr6g0266801
rosa_laevigata	RLG00000014090 RLG00000014095
rosa_multiflora	Rmu_co8489239.1_g000001 Rmu_sc0006413.1_g000021
rosa_roxburghii	Rroxscaffold_7G00201610
rosa_rugosa	Rorug06G0025600 Rorug06G0025600 Rorug06G0025700
rosa_samantha	Rh6AG147100 Rh6BG147200 Rh6CG142900 Rh6DG131900
rosa_wichuraiana	Rw6G012610 Rw6G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	159
AciI	CCGC	6 cut(s)	94, 139, 149, 157, 159, 216
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	4 cut(s)	3, 95, 197, 217
AcsI	RAATTY	1 cut(s)	589
AcvI	CACGTG	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	640
AfaI	GTAC	3 cut(s)	122, 191, 304
AgsI	TTSAA	2 cut(s)	319, 400
AluBI	AGCT	5 cut(s)	17, 74, 324, 334, 395
AluI	AGCT	5 cut(s)	17, 74, 324, 334, 395
Alw21I	GWGCWC	2 cut(s)	180, 312
Alw26I	GTCTC	1 cut(s)	16
Alw44I	GTGCAC	2 cut(s)	176, 308
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	4 cut(s)	3, 95, 197, 217
ApaLI	GTGCAC	2 cut(s)	176, 308
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	589
AspLEI	GCGC	2 cut(s)	186, 281
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	254
BaeGI	GKGCMC	2 cut(s)	180, 312
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbrPI	CACGTG	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	180, 312
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	3 cut(s)	82, 100, 250
BciVI	GTATCC	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	5 cut(s)	18, 95, 157, 160, 217
BlsI	GCNGC	5 cut(s)	19, 96, 158, 161, 218
Bme1390I	CCNGG	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	163, 238
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	2 cut(s)	81, 426
BpuMI	CCSGG	1 cut(s)	109
BsaAI	YACGTR	2 cut(s)	124, 181
BsaHI	GRCGYC	1 cut(s)	640
BsaJI	CCNNGG	3 cut(s)	157, 240, 567
BsaWI	WCCGGW	1 cut(s)	389
Bse118I	RCCGGY	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	157, 240, 567
BseGI	GGATG	1 cut(s)	493
BseRI	GAGGAG	2 cut(s)	218, 536
BseSI	GKGCMC	2 cut(s)	180, 312
BseX3I	CGGCCG	3 cut(s)	95, 197, 217
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	3 cut(s)	98, 200, 220
BshFI	GGCC	4 cut(s)	5, 97, 199, 219
BsiEI	CGRYCG	3 cut(s)	98, 200, 220
BsiHKAI	GWGCWC	2 cut(s)	180, 312
BsiSI	CCGG	4 cut(s)	108, 200, 220, 390
BsiWI	CGTACG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	4 cut(s)	5, 97, 199, 219
Bsp1286I	GDGCHC	2 cut(s)	180, 312
Bsp143I	GATC	2 cut(s)	141, 259
BspACI	CCGC	6 cut(s)	94, 139, 149, 157, 159, 216
BspANI	GGCC	4 cut(s)	5, 97, 199, 219
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	163, 238
BspPI	GGATC	1 cut(s)	149
BsrBI	CCGCTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	3 cut(s)	157, 240, 567
BssMI	GATC	2 cut(s)	141, 259
BssNI	GRCGYC	1 cut(s)	640
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	6 cut(s)	46, 67, 83, 228, 307, 410
BstACI	GRCGYC	1 cut(s)	640
BstBAI	YACGTR	2 cut(s)	124, 181
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	186, 281
BstKTI	GATC	2 cut(s)	144, 262
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	2 cut(s)	141, 259
BstMCI	CGRYCG	3 cut(s)	98, 200, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 524
BstSCI	CCNGG	1 cut(s)	107
BstSLI	GKGCMC	2 cut(s)	180, 312
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	4
BstZI	CGGCCG	3 cut(s)	95, 197, 217
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	4 cut(s)	5, 97, 199, 219
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	42, 473
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	2 cut(s)	186, 281
Cfr10I	RCCGGY	1 cut(s)	219
Cfr42I	CCGCGG	1 cut(s)	160
CseI	GACGC	2 cut(s)	347, 629
Csp6I	GTAC	3 cut(s)	121, 190, 303
CviAII	CATG	2 cut(s)	460, 511
CviQI	GTAC	3 cut(s)	121, 190, 303
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	2 cut(s)	143, 261
DpnII	GATC	2 cut(s)	141, 259
EaeI	YGGCCR	4 cut(s)	3, 95, 197, 217
EagI	CGGCCG	3 cut(s)	95, 197, 217
EciI	GGCGGA	1 cut(s)	164
EclXI	CGGCCG	3 cut(s)	95, 197, 217
Eco130I	CCWWGG	1 cut(s)	240
Eco52I	CGGCCG	3 cut(s)	95, 197, 217
Eco72I	CACGTG	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	2 cut(s)	463, 514
FaiI	YATR	6 cut(s)	327, 378, 461, 506, 512, 597
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	459, 510
Fnu4HI	GCNGC	5 cut(s)	18, 95, 157, 160, 217
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	5 cut(s)	18, 95, 157, 160, 217
GlaI	GCGC	2 cut(s)	185, 280
GluI	GCNGC	5 cut(s)	18, 95, 157, 160, 217
GsaI	CCCAGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	5, 97, 199, 219
HapII	CCGG	4 cut(s)	108, 200, 220, 390
HgaI	GACGC	2 cut(s)	347, 629
HhaI	GCGC	2 cut(s)	186, 281
Hin1I	GRCGYC	1 cut(s)	640
Hin1II	CATG	2 cut(s)	463, 514
Hin6I	GCGC	2 cut(s)	184, 279
HinP1I	GCGC	2 cut(s)	184, 279
HinfI	GANTC	3 cut(s)	35, 104, 206
HpaII	CCGG	4 cut(s)	108, 200, 220, 390
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	178, 303, 310
Hpy188I	TCNGA	6 cut(s)	71, 103, 259, 276, 568, 645
Hpy188III	TCNNGA	2 cut(s)	319, 404
Hpy8I	GTNNAC	3 cut(s)	178, 303, 310
Hpy99I	CGWCG	6 cut(s)	103, 121, 272, 341, 356, 645
HpyAV	CCTTC	4 cut(s)	166, 325, 467, 548
HpyCH4III	ACNGT	6 cut(s)	46, 67, 83, 228, 307, 410
HpyCH4IV	ACGT	4 cut(s)	123, 168, 180, 270
HpyCH4V	TGCA	5 cut(s)	178, 310, 426, 518, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 524
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	4 cut(s)	123, 168, 180, 270
Hsp92I	GRCGYC	1 cut(s)	640
Hsp92II	CATG	2 cut(s)	463, 514
HspAI	GCGC	2 cut(s)	184, 279
KroI	GCCGGC	1 cut(s)	219
KroNI	GCCGGC	1 cut(s)	221
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	141, 259
LmnI	GCTCC	3 cut(s)	167, 242, 392
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	2 cut(s)	81, 426
MaeII	ACGT	4 cut(s)	123, 168, 180, 270
MalI	GATC	2 cut(s)	143, 261
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	2 cut(s)	141, 259
MboII	GAAGA	3 cut(s)	352, 538, 555
MhlI	GDGCHC	2 cut(s)	180, 312
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	379, 589
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	29, 215
MmeI	TCCRAC	3 cut(s)	81, 189, 623
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	4 cut(s)	108, 200, 220, 390
MspR9I	CCNGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	520
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	94, 524
NaeI	GCCGGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	141, 259
NgoMIV	GCCGGC	1 cut(s)	219
NlaIII	CATG	2 cut(s)	463, 514
NlaIV	GGNNCC	2 cut(s)	163, 238
PcsI	WCGNNNNNNNCGW	2 cut(s)	125, 141
PctI	GAATGC	1 cut(s)	520
PdiI	GCCGGC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	104
Pfl23II	CGTACG	1 cut(s)	120
PflFI	GACNNNGTC	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	107
PkrI	GCNGC	5 cut(s)	19, 96, 158, 161, 218
PleI	GAGTC	2 cut(s)	29, 214
PmaCI	CACGTG	1 cut(s)	181
PmlI	CACGTG	1 cut(s)	181
PpsI	GAGTC	2 cut(s)	29, 214
Ppu21I	YACGTR	2 cut(s)	124, 181
PspCI	CACGTG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	74
PspLI	CGTACG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	163, 238
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	3 cut(s)	122, 191, 304
RsaNI	GTAC	3 cut(s)	121, 190, 303
SacII	CCGCGG	1 cut(s)	160
SatI	GCNGC	5 cut(s)	18, 95, 157, 160, 217
Sau3AI	GATC	2 cut(s)	141, 259
SchI	GAGTC	2 cut(s)	29, 215
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	2 cut(s)	180, 312
SfaNI	GCATC	2 cut(s)	81, 426
Sfr303I	CCGCGG	1 cut(s)	160
SgrBI	CCGCGG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	379, 589
SsiI	CCGC	6 cut(s)	94, 139, 149, 157, 159, 216
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	6 cut(s)	46, 67, 83, 228, 307, 410
TaiI	ACGT	4 cut(s)	126, 171, 183, 273
TaqI	TCGA	7 cut(s)	33, 135, 144, 209, 291, 336, 372
TasI	AATT	2 cut(s)	379, 589
TauI	GCSGC	4 cut(s)	97, 159, 162, 219
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	2 cut(s)	49, 473
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	482, 527
TspRI	CASTG	2 cut(s)	49, 473
Tth111I	GACNNNGTC	1 cut(s)	410
VneI	GTGCAC	2 cut(s)	176, 308
XapI	RAATTY	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.