Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005976

Physical Location & Seq

Genomic Coordinates Reverse (-)

49249239 .. 49253288

Gene Structure 4050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGAAACCAAAAGCTCCAAGACAAACCCTCAACTCCTACACTGTCAAACCCATCAACAAGACCGTCAGAGCCGGCGACTGCGTTCTGATGCGGCCGTCGGAGCCGGGGAAGCCGTCCTACGTGGCGAAGATCGAGCGGATCGAGGCGGACAGCCGCGGAGCCAACGTGAAAGTGCACGTGCGGTGGTATTACCGGCCGGAGGAGTCGATCGGCGGCCGGAGACAGTTCCATGGATCCAAGGAGGTTTTTCTCTCCGACCACCACGACGTTCAGAGCGCCGACACCATAGAGGGGAAGTGTACGGTGCATACCTTTAGAGGGTATAGCAAGCTCGACGCGGTTGGAAACGACGACTTCTTTTGTCGTTTTGAGTATAATTCCACTACTGGTTCCTTCAATCCTGACAGAGTCGCCGTGTACTGCAAGTGTGAGATGCCTTACAACCCTGATGACCTCATGGTTCAGTGTGAAGGTTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGAGTGCAGAGGAAGCCGAAAGACTTGACCACTTTTTTTGTGAAGGTTGTTCTCGTGAGGGACAAAAGAAGTTGGAGAATTCGCATACTGTCTCCAGACAGTTGGATACAAAGGTGGAGACAAAACGTCGCCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

216

Amino Acids

24.78

Weight (kDa)

8.01

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	22 - 136	1.6e-24	BAH domain
PHD	PF00628	142 - 187	1.6e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39100 AT4G39100
fragaria_vesca	FvH4_2g09891 FvH4_2g09891
malus_domestica	MD05G1059600.v1.1 MD10G1067700.v1.1
prunus_persica	Prupe.8G089400_v2.0.a1 Prupe.8G089400_v2.0.a1 Prupe.8G089400_v2.0.a1
pyrus_communis	pycom05g05090 pycom10g05350
rosa_chinensis	RchiOBHm_Chr6g0266611 RchiOBHm_Chr6g0266801
rosa_laevigata	RLG00000014090 RLG00000014095
rosa_multiflora	Rmu_co8489239.1_g000001 Rmu_sc0006413.1_g000021
rosa_roxburghii	Rroxscaffold_7G00201610
rosa_rugosa	Rorug06G0025600 Rorug06G0025600 Rorug06G0025700
rosa_samantha	Rh6AG147100 Rh6BG147200 Rh6CG142900 Rh6DG131900
rosa_wichuraiana	Rw6G012610 Rw6G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	2 cut(s)	159, 341
AciI	CCGC	8 cut(s)	94, 139, 149, 157, 159, 184, 216, 341
AclWI	GGATC	3 cut(s)	149, 231, 244
AcoI	YGGCCR	3 cut(s)	95, 197, 217
AcsI	RAATTY	1 cut(s)	589
AcvI	CACGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	304, 422
AfiI	CCNNNNNNNGG	3 cut(s)	202, 294, 321
AgsI	TTSAA	1 cut(s)	400
AhdI	GACNNNNNGTC	1 cut(s)	636
AluBI	AGCT	2 cut(s)	17, 334
AluI	AGCT	2 cut(s)	17, 334
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	217, 607, 623
Alw44I	GTGCAC	1 cut(s)	176
AlwI	GGATC	3 cut(s)	149, 231, 244
AoxI	GGCC	3 cut(s)	95, 197, 217
ApaLI	GTGCAC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	589
AspLEI	GCGC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	180
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BamHI	GGATCC	1 cut(s)	236
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BauI	CACGAG	1 cut(s)	564
BbrPI	CACGTG	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	3 cut(s)	82, 100, 401
BciVI	GTATCC	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	217, 607, 623
BfoI	RGCGCY	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	610
BisI	GCNGC	3 cut(s)	95, 157, 217
BlsI	GCNGC	3 cut(s)	96, 158, 218
Bme1390I	CCNGG	1 cut(s)	108
BmeRI	GACNNNNNGTC	1 cut(s)	636
BmiI	GGNNCC	4 cut(s)	105, 163, 238, 394
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	81, 426
BpmI	CTGGAG	1 cut(s)	589
BpuMI	CCSGG	1 cut(s)	108
BsaAI	YACGTR	2 cut(s)	124, 181
BsaJI	CCNNGG	4 cut(s)	107, 157, 232, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 294, 321
Bse118I	RCCGGY	2 cut(s)	74, 195
Bse1I	ACTGG	1 cut(s)	394
BseDI	CCNNGG	4 cut(s)	107, 157, 232, 240
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	3 cut(s)	202, 294, 321
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	180
BseX3I	CGGCCG	3 cut(s)	95, 197, 217
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	2 cut(s)	159, 341
Bsh1285I	CGRYCG	4 cut(s)	98, 200, 213, 220
BshFI	GGCC	3 cut(s)	97, 199, 219
BsiEI	CGRYCG	4 cut(s)	98, 200, 213, 220
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	6 cut(s)	75, 107, 196, 200, 220, 643
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	3 cut(s)	202, 294, 321
BsmAI	GTCTC	3 cut(s)	217, 607, 623
BsmFI	GGGAC	1 cut(s)	585
BsnI	GGCC	3 cut(s)	97, 199, 219
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	132, 141, 210, 236
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	8 cut(s)	94, 139, 149, 157, 159, 184, 216, 341
BspANI	GGCC	3 cut(s)	97, 199, 219
BspFNI	CGCG	2 cut(s)	159, 341
BspLI	GGNNCC	4 cut(s)	105, 163, 238, 394
BspPI	GGATC	3 cut(s)	149, 231, 244
BsrBI	CCGCTC	1 cut(s)	139
BsrFI	RCCGGY	2 cut(s)	74, 195
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	2 cut(s)	74, 195
BssECI	CCNNGG	4 cut(s)	107, 157, 232, 240
BssMI	GATC	4 cut(s)	132, 141, 210, 236
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	2 cut(s)	232, 240
Bst2BI	CACGAG	1 cut(s)	564
Bst4CI	ACNGT	6 cut(s)	46, 67, 228, 307, 601, 612
BstBAI	YACGTR	2 cut(s)	124, 181
BstC8I	GCNNGC	2 cut(s)	76, 332
BstDSI	CCRYGG	2 cut(s)	157, 232
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	2 cut(s)	159, 341
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	4 cut(s)	135, 144, 213, 239
BstMAI	GTCTC	3 cut(s)	217, 607, 623
BstMBI	GATC	4 cut(s)	132, 141, 210, 236
BstMCI	CGRYCG	4 cut(s)	98, 200, 213, 220
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 112, 524
BstSCI	CCNGG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	2 cut(s)	159, 341
BstX2I	RGATCY	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	236
BstZI	CGGCCG	3 cut(s)	95, 197, 217
BsuI	GTATCC	1 cut(s)	610
BsuRI	GGCC	3 cut(s)	97, 199, 219
BtgI	CCRYGG	2 cut(s)	157, 232
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	42, 473
Cac8I	GCNNGC	2 cut(s)	76, 332
CfoI	GCGC	1 cut(s)	281
Cfr10I	RCCGGY	2 cut(s)	74, 195
Cfr42I	CCGCGG	1 cut(s)	160
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	303, 421
CspCI	CAANNNNNGTGG	2 cut(s)	530, 565
CviAII	CATG	3 cut(s)	233, 460, 511
CviQI	GTAC	2 cut(s)	303, 421
DpnI	GATC	4 cut(s)	134, 143, 212, 238
DpnII	GATC	4 cut(s)	132, 141, 210, 236
DriI	GACNNNNNGTC	1 cut(s)	636
EaeI	YGGCCR	3 cut(s)	95, 197, 217
EagI	CGGCCG	3 cut(s)	95, 197, 217
Eam1105I	GACNNNNNGTC	1 cut(s)	636
EciI	GGCGGA	1 cut(s)	164
EclXI	CGGCCG	3 cut(s)	95, 197, 217
Eco130I	CCWWGG	2 cut(s)	232, 240
Eco52I	CGGCCG	3 cut(s)	95, 197, 217
Eco72I	CACGTG	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	589
EcoT14I	CCWWGG	2 cut(s)	232, 240
ErhI	CCWWGG	2 cut(s)	232, 240
FaeI	CATG	3 cut(s)	236, 463, 514
FaiI	YATR	9 cut(s)	234, 290, 312, 327, 378, 461, 506, 512, 597
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	3 cut(s)	232, 459, 510
Fnu4HI	GCNGC	3 cut(s)	95, 157, 217
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	3 cut(s)	95, 157, 217
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	3 cut(s)	95, 157, 217
GsuI	CTGGAG	1 cut(s)	589
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	3 cut(s)	97, 199, 219
HapII	CCGG	6 cut(s)	75, 107, 196, 200, 220, 643
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	3 cut(s)	236, 463, 514
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HinfI	GANTC	2 cut(s)	206, 411
HpaII	CCGG	6 cut(s)	75, 107, 196, 200, 220, 643
Hpy166II	GTNNAC	3 cut(s)	178, 303, 421
Hpy188I	TCNGA	5 cut(s)	71, 90, 103, 259, 276
Hpy188III	TCNNGA	3 cut(s)	404, 566, 606
Hpy8I	GTNNAC	3 cut(s)	178, 303, 421
Hpy99I	CGWCG	5 cut(s)	103, 272, 341, 356, 642
HpyAV	CCTTC	3 cut(s)	406, 467, 548
HpyCH4III	ACNGT	6 cut(s)	46, 67, 228, 307, 601, 612
HpyCH4IV	ACGT	5 cut(s)	123, 168, 180, 270, 637
HpyCH4V	TGCA	4 cut(s)	178, 310, 426, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 112, 524
HpySE526I	ACGT	5 cut(s)	123, 168, 180, 270, 637
Hsp92II	CATG	3 cut(s)	236, 463, 514
HspAI	GCGC	1 cut(s)	279
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	132, 141, 210, 236
LmnI	GCTCC	3 cut(s)	22, 103, 161
LweI	GCATC	2 cut(s)	81, 426
MaeII	ACGT	5 cut(s)	123, 168, 180, 270, 637
MalI	GATC	4 cut(s)	134, 143, 212, 238
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	4 cut(s)	132, 141, 210, 236
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	379, 589
MlyI	GAGTC	2 cut(s)	215, 420
MmeI	TCCRAC	5 cut(s)	81, 282, 325, 564, 594
MroNI	GCCGGC	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	6 cut(s)	75, 107, 196, 200, 220, 643
MspR9I	CCNGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	159, 341
MwoI	GCNNNNNNNGC	3 cut(s)	103, 112, 524
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	4 cut(s)	132, 141, 210, 236
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	3 cut(s)	236, 463, 514
NlaIV	GGNNCC	4 cut(s)	105, 163, 238, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdiI	GCCGGC	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	3 cut(s)	96, 158, 218
Ple19I	CGATCG	1 cut(s)	213
PleI	GAGTC	2 cut(s)	214, 419
PmaCI	CACGTG	1 cut(s)	181
PmlI	CACGTG	1 cut(s)	181
PpsI	GAGTC	2 cut(s)	214, 419
Ppu21I	YACGTR	2 cut(s)	124, 181
PspCI	CACGTG	1 cut(s)	181
PspN4I	GGNNCC	4 cut(s)	105, 163, 238, 394
PsuI	RGATCY	1 cut(s)	236
PsyI	GACNNNGTC	1 cut(s)	410
PvuI	CGATCG	1 cut(s)	213
RsaI	GTAC	2 cut(s)	304, 422
RsaNI	GTAC	2 cut(s)	303, 421
SacII	CCGCGG	1 cut(s)	160
SatI	GCNGC	3 cut(s)	95, 157, 217
Sau3AI	GATC	4 cut(s)	132, 141, 210, 236
SchI	GAGTC	2 cut(s)	215, 420
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	2 cut(s)	81, 426
Sfr303I	CCGCGG	1 cut(s)	160
SgrBI	CCGCGG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	379, 589
SsiI	CCGC	8 cut(s)	94, 139, 149, 157, 159, 184, 216, 341
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	2 cut(s)	232, 240
TaaI	ACNGT	6 cut(s)	46, 67, 228, 307, 601, 612
TaiI	ACGT	5 cut(s)	126, 171, 183, 273, 640
TaqI	TCGA	4 cut(s)	135, 144, 209, 336
TasI	AATT	2 cut(s)	379, 589
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	3 cut(s)	97, 159, 219
TscAI	CASTG	2 cut(s)	49, 473
TspDTI	ATGAA	1 cut(s)	482
TspRI	CASTG	2 cut(s)	49, 473
Tth111I	GACNNNGTC	1 cut(s)	410
VneI	GTGCAC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.