Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005976

Physical Location & Seq

Genomic Coordinates Reverse (-)

23272434 .. 23272986

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGAGTGCAGAGGAAGCTGAAAGACTTGACCACTTTTTTTGTGAAGGTTGTTCTCCCGAGGGACAAAAGAAGTTGGAGAATTCGCATACTGTCTCCAGACAGTTGGATACAAAGGTGGAGACAAAACGTCGCCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

46

Amino Acids

5.42

Weight (kDa)

7.84

Isoelectric Point (pI)

81.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39100 AT4G39100
fragaria_vesca	FvH4_2g09891 FvH4_2g09891
malus_domestica	MD05G1059600.v1.1 MD10G1067700.v1.1
prunus_persica	Prupe.8G089400_v2.0.a1 Prupe.8G089400_v2.0.a1 Prupe.8G089400_v2.0.a1
pyrus_communis	pycom05g05090 pycom10g05350
rosa_chinensis	RchiOBHm_Chr6g0266611 RchiOBHm_Chr6g0266801
rosa_laevigata	RLG00000014090 RLG00000014095
rosa_multiflora	Rmu_co8489239.1_g000001 Rmu_sc0006413.1_g000021
rosa_roxburghii	Rroxscaffold_7G00201610
rosa_rugosa	Rorug06G0025600 Rorug06G0025600 Rorug06G0025700
rosa_samantha	Rh6AG147100 Rh6BG147200 Rh6CG142900 Rh6DG131900
rosa_wichuraiana	Rw6G012610 Rw6G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	79
AhdI	GACNNNNNGTC	1 cut(s)	126
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	97, 113
Ama87I	CYCGRG	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	56
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BciVI	GTATCC	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	97, 113
BfuI	GTATCC	1 cut(s)	100
BmeRI	GACNNNNNGTC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	97, 113
BsmFI	GGGAC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	91, 102
BstMAI	GTCTC	2 cut(s)	97, 113
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	20, 55
CviJI	RGCY	1 cut(s)	17
CviKI_1	RGCY	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	126
Eam1105I	GACNNNNNGTC	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	79
FaiI	YATR	1 cut(s)	87
FaqI	GGGAC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	79
HapII	CCGG	1 cut(s)	133
HpaII	CCGG	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	56, 96
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	91, 102
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	127
LpnPI	CCDG	1 cut(s)	109
MaeII	ACGT	1 cut(s)	127
MluCI	AATT	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	54, 84
MnlI	CCTC	3 cut(s)	4, 52, 129
MspI	CCGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	14
SetI	ASST	5 cut(s)	19, 49, 117, 130, 140
SgeI	CNNG	4 cut(s)	38, 68, 70, 108
Sse9I	AATT	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	91, 102
TaiI	ACGT	1 cut(s)	130
TasI	AATT	1 cut(s)	79
XapI	RAATTY	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.