Rmu_co8489239.1_g000001

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8489239.1
OG0005976
Physical Location & Seq
Reverse (-)
1 .. 2154
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8489239.1_g000001.1.cds

Sequence Viewer

Length: 488 bp
atggcgaaaccaaaagctccgagacaaaccctcaactcctacactgtcaaacccatcaacaagaccgtcagagccggcgactgcgttctgatgcggccgtcggagccggggaagccgtcctacgtggcgaagatcgagcggatcgaggcggacagccgcggagccaacgtcaaggtgcacgtgcggtggtactaccggccggaggagtcgatcggcggccggagacagttccatggatccaaggaggtttttctctccgaccaccacgacgtgcagagcgccgacaccatagagggcaagtgtacggtgcacacgttcagggggtatagcaagctcgacgccgttggaaacgacgacttcttttgtcgtttcgagtataattccactactggttccttcaatcctgaccgagtcgccgtgtactgcaagtgtgagatgccttacaaccctgatgacctcatggttcagtgtgaaggttgtagtgattg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

162

Amino Acids

18.35

Weight (kDa)

7.59

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 1 cut(s) 159
AciI CCGC 7 cut(s) 94, 139, 149, 157, 159, 184, 216
AclWI GGATC 3 cut(s) 149, 231, 244
AcoI YGGCCR 3 cut(s) 95, 197, 217
AcvI CACGTG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 339
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 3 cut(s) 191, 304, 422
AfiI CCNNNNNNNGG 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 400
AjiI CACGTC 1 cut(s) 271
AluBI AGCT 2 cut(s) 17, 334
AluI AGCT 2 cut(s) 17, 334
Alw21I GWGCWC 2 cut(s) 180, 312
Alw26I GTCTC 2 cut(s) 16, 217
Alw44I GTGCAC 2 cut(s) 176, 308
AlwI GGATC 3 cut(s) 149, 231, 244
AoxI GGCC 3 cut(s) 95, 197, 217
ApaLI GTGCAC 2 cut(s) 176, 308
AspLEI GCGC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 108
BaeGI GKGCMC 2 cut(s) 180, 312
BamHI GGATCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbrPI CACGTG 1 cut(s) 181
Bbv12I GWGCWC 2 cut(s) 180, 312
BccI CCATC 1 cut(s) 62
BceAI ACGGC 4 cut(s) 82, 100, 326, 401
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 16, 217
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 3 cut(s) 95, 157, 217
BlsI GCNGC 3 cut(s) 96, 158, 218
Bme1390I CCNGG 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 271
BmiI GGNNCC 4 cut(s) 105, 163, 238, 394
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 81, 426
BpuMI CCSGG 1 cut(s) 108
BsaAI YACGTR 2 cut(s) 124, 181
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 4 cut(s) 107, 157, 232, 240
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 2 cut(s) 74, 195
Bse1I ACTGG 1 cut(s) 394
BseDI CCNNGG 4 cut(s) 107, 157, 232, 240
BseLI CCNNNNNNNGG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 2 cut(s) 180, 312
BseX3I CGGCCG 3 cut(s) 95, 197, 217
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 4 cut(s) 98, 200, 213, 220
BshFI GGCC 3 cut(s) 97, 199, 219
BsiEI CGRYCG 4 cut(s) 98, 200, 213, 220
BsiHKAI GWGCWC 2 cut(s) 180, 312
BsiSI CCGG 5 cut(s) 75, 107, 196, 200, 220
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 2 cut(s) 16, 217
BsnI GGCC 3 cut(s) 97, 199, 219
Bsp1286I GDGCHC 2 cut(s) 180, 312
Bsp143I GATC 4 cut(s) 132, 141, 210, 236
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 7 cut(s) 94, 139, 149, 157, 159, 184, 216
BspANI GGCC 3 cut(s) 97, 199, 219
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 4 cut(s) 105, 163, 238, 394
BspPI GGATC 3 cut(s) 149, 231, 244
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 74, 195
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 2 cut(s) 74, 195
BssECI CCNNGG 4 cut(s) 107, 157, 232, 240
BssMI GATC 4 cut(s) 132, 141, 210, 236
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 2 cut(s) 232, 240
Bst4CI ACNGT 4 cut(s) 46, 67, 228, 307
BstACI GRCGYC 1 cut(s) 339
BstBAI YACGTR 2 cut(s) 124, 181
BstC8I GCNNGC 2 cut(s) 76, 332
BstDSI CCRYGG 2 cut(s) 157, 232
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 135, 144, 213, 239
BstMAI GTCTC 2 cut(s) 16, 217
BstMBI GATC 4 cut(s) 132, 141, 210, 236
BstMCI CGRYCG 4 cut(s) 98, 200, 213, 220
BstMWI GCNNNNNNNGC 2 cut(s) 103, 112
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 2 cut(s) 180, 312
BstUI CGCG 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BstZI CGGCCG 3 cut(s) 95, 197, 217
BsuRI GGCC 3 cut(s) 97, 199, 219
BtgI CCRYGG 2 cut(s) 157, 232
BtrI CACGTC 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 42, 473
Cac8I GCNNGC 2 cut(s) 76, 332
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 74, 195
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 1 cut(s) 347
Csp6I GTAC 3 cut(s) 190, 303, 421
CviAII CATG 2 cut(s) 233, 460
CviQI GTAC 3 cut(s) 190, 303, 421
DpnI GATC 4 cut(s) 134, 143, 212, 238
DpnII GATC 4 cut(s) 132, 141, 210, 236
DraIII CACNNNGTG 1 cut(s) 271
EaeI YGGCCR 3 cut(s) 95, 197, 217
EagI CGGCCG 3 cut(s) 95, 197, 217
EciI GGCGGA 1 cut(s) 164
EclXI CGGCCG 3 cut(s) 95, 197, 217
Eco130I CCWWGG 2 cut(s) 232, 240
Eco52I CGGCCG 3 cut(s) 95, 197, 217
Eco72I CACGTG 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 232, 240
ErhI CCWWGG 2 cut(s) 232, 240
FaeI CATG 2 cut(s) 236, 463
FaiI YATR 5 cut(s) 234, 290, 327, 378, 461
FatI CATG 2 cut(s) 232, 459
Fnu4HI GCNGC 3 cut(s) 95, 157, 217
Fsp4HI GCNGC 3 cut(s) 95, 157, 217
GlaI GCGC 1 cut(s) 280
GluI GCNGC 3 cut(s) 95, 157, 217
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 97, 199, 219
HapII CCGG 5 cut(s) 75, 107, 196, 200, 220
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 2 cut(s) 236, 463
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 2 cut(s) 206, 411
HpaII CCGG 5 cut(s) 75, 107, 196, 200, 220
Hpy166II GTNNAC 4 cut(s) 178, 303, 310, 421
Hpy188I TCNGA 5 cut(s) 21, 71, 90, 103, 259
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 4 cut(s) 178, 303, 310, 421
Hpy99I CGWCG 4 cut(s) 103, 272, 341, 356
HpyAV CCTTC 2 cut(s) 406, 467
HpyCH4III ACNGT 4 cut(s) 46, 67, 228, 307
HpyCH4IV ACGT 5 cut(s) 123, 168, 180, 270, 314
HpyCH4V TGCA 4 cut(s) 178, 274, 310, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 112
HpySE526I ACGT 5 cut(s) 123, 168, 180, 270, 314
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 2 cut(s) 236, 463
HspAI GCGC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 4 cut(s) 132, 141, 210, 236
LmnI GCTCC 3 cut(s) 22, 103, 161
LpnPI CCDG 9 cut(s) 88, 120, 209, 213, 233, 304, 375, 417, 462
LweI GCATC 2 cut(s) 81, 426
MaeII ACGT 5 cut(s) 123, 168, 180, 270, 314
MalI GATC 4 cut(s) 134, 143, 212, 238
MbiI CCGCTC 1 cut(s) 139
MboI GATC 4 cut(s) 132, 141, 210, 236
MboII GAAGA 1 cut(s) 142
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 2 cut(s) 180, 312
MluCI AATT 1 cut(s) 379
MlyI GAGTC 2 cut(s) 215, 420
MmeI TCCRAC 3 cut(s) 81, 282, 325
MnlI CCTC 6 cut(s) 41, 139, 196, 238, 286, 467
MroNI GCCGGC 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 5 cut(s) 75, 107, 196, 200, 220
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 103, 112
NaeI GCCGGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 232
NdeII GATC 4 cut(s) 132, 141, 210, 236
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 236, 463
NlaIV GGNNCC 4 cut(s) 105, 163, 238, 394
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 311
PdiI GCCGGC 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 3 cut(s) 96, 158, 218
Ple19I CGATCG 1 cut(s) 213
PleI GAGTC 2 cut(s) 214, 419
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 2 cut(s) 214, 419
Ppu21I YACGTR 2 cut(s) 124, 181
PspCI CACGTG 1 cut(s) 181
PspN4I GGNNCC 4 cut(s) 105, 163, 238, 394
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 410
PvuI CGATCG 1 cut(s) 213
RsaI GTAC 3 cut(s) 191, 304, 422
RsaNI GTAC 3 cut(s) 190, 303, 421
SacII CCGCGG 1 cut(s) 160
SatI GCNGC 3 cut(s) 95, 157, 217
Sau3AI GATC 4 cut(s) 132, 141, 210, 236
SchI GAGTC 2 cut(s) 215, 420
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 2 cut(s) 180, 312
SfaNI GCATC 2 cut(s) 81, 426
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
Sse9I AATT 1 cut(s) 379
SsiI CCGC 7 cut(s) 94, 139, 149, 157, 159, 184, 216
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 232, 240
TaaI ACNGT 4 cut(s) 46, 67, 228, 307
TaiI ACGT 5 cut(s) 126, 171, 183, 273, 317
TaqI TCGA 5 cut(s) 135, 144, 209, 336, 372
TaqII GACCGA 1 cut(s) 423
TasI AATT 1 cut(s) 379
TatI WGTACW 1 cut(s) 420
TauI GCSGC 3 cut(s) 97, 159, 219
TscAI CASTG 2 cut(s) 49, 473
TspRI CASTG 2 cut(s) 49, 473
Tth111I GACNNNGTC 1 cut(s) 410
VneI GTGCAC 2 cut(s) 176, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.