FvH4_2g09891

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005976
Physical Location & Seq
Forward (+)
8748620 .. 8752935
4316 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09891.t1

Sequence Viewer

Length: 651 bp
ATGGCGAAACCAAAAGCTCCAAGACAAACCCTCAACTCTTACACTGTCAAACCCATCAACAAGACCGTCAGAGCCGGCGACTGCGTTTTGATGCGGCCGTCGGAGCCGGGGAAGCCGTCGTACGTGGCGAAGATCGAGCGGATCGAGGCGGACAGTCGCGGAGCAAACGTGAAGGTGCACGTGCGGTGGTACTATCGGCCGGAGGAGTCCATCGGCGGCCGGCGACAGTTTCATGGATCCAAGGAGGTCTTCCTCTCCGACCACCACGACGTTCAGAGCGCTGATACGATAGAGGGCAAGTGTACTGTGCATACTTTTCGGGGTTATAGCAAGCTCGACGCTGTTGGAAATGACGACTTCTTTTGTCGTTTCGAGTATAATTCGACTACTGGTTCCTTCAATCCGGACCGAGTTGCCGTGTACTGCAAGTGTGAGATGCCTTATAACCCAGATGACCTCATGGTTCAATGTGAGGGTTGTAATGATTGGTTTCATCCTGCTTGTATAGACATGAGTGCAGAGGAAGCCGAAAGACTTGAGCACTTTTTCTGTGAAAGTTGTTCACCCGAGGGTCAAAAGAAGTTGGAGAATTCGCATACTGTTTCCAGACAGTTGGATACAAAGGTCGAGACAAAACGTCGTCGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

217

Amino Acids

24.8

Weight (kDa)

7.56

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 22 - 136 1.6e-24 BAH domain
PHD PF00628 142 - 187 4.1e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 6 cut(s) 94, 139, 149, 159, 184, 216
AclWI GGATC 3 cut(s) 149, 231, 244
AcoI YGGCCR 3 cut(s) 95, 197, 217
AcsI RAATTY 1 cut(s) 589
AcvI CACGTG 1 cut(s) 181
AfaI GTAC 4 cut(s) 122, 191, 304, 422
AfeI AGCGCT 1 cut(s) 280
AgsI TTSAA 2 cut(s) 400, 467
AhdI GACNNNNNGTC 1 cut(s) 636
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 2 cut(s) 17, 334
AluI AGCT 2 cut(s) 17, 334
Alw21I GWGCWC 2 cut(s) 180, 543
Alw26I GTCTC 1 cut(s) 623
Alw44I GTGCAC 1 cut(s) 176
AlwI GGATC 3 cut(s) 149, 231, 244
Ama87I CYCGRG 1 cut(s) 566
Aor13HI TCCGGA 1 cut(s) 403
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 3 cut(s) 95, 197, 217
ApaLI GTGCAC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 589
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 555
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 180
BaeI ACNNNNGTAYC 2 cut(s) 609, 642
BamHI GGATCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbrPI CACGTG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 2 cut(s) 180, 543
BccI CCATC 2 cut(s) 62, 218
BceAI ACGGC 3 cut(s) 82, 100, 401
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciVI GTATCC 1 cut(s) 610
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 623
BfoI RGCGCY 1 cut(s) 282
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 2 cut(s) 95, 217
BlsI GCNGC 2 cut(s) 96, 218
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 406
BmeRI GACNNNNNGTC 1 cut(s) 636
BmeT110I CYCGRG 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 3 cut(s) 105, 238, 394
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 81, 426
BpiI GAAGAC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 108
BsaAI YACGTR 2 cut(s) 124, 181
BsaJI CCNNGG 3 cut(s) 107, 240, 567
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bse118I RCCGGY 2 cut(s) 74, 219
Bse1I ACTGG 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 403
BseDI CCNNGG 3 cut(s) 107, 240, 567
BseGI GGATG 1 cut(s) 493
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 180
BseX3I CGGCCG 3 cut(s) 95, 197, 217
BsgI GTGCAG 1 cut(s) 537
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 3 cut(s) 98, 200, 220
BshFI GGCC 3 cut(s) 97, 199, 219
BsiEI CGRYCG 3 cut(s) 98, 200, 220
BsiHKAI GWGCWC 2 cut(s) 180, 543
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 5 cut(s) 75, 107, 200, 220, 404
BsiWI CGTACG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 623
BsnI GGCC 3 cut(s) 97, 199, 219
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 2 cut(s) 180, 543
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 3 cut(s) 132, 141, 236
BspACI CCGC 6 cut(s) 94, 139, 149, 159, 184, 216
BspANI GGCC 3 cut(s) 97, 199, 219
BspEI TCCGGA 1 cut(s) 403
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 105, 238, 394
BspPI GGATC 3 cut(s) 149, 231, 244
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 74, 219
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 2 cut(s) 74, 219
BssECI CCNNGG 3 cut(s) 107, 240, 567
BssMI GATC 3 cut(s) 132, 141, 236
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 7 cut(s) 46, 67, 155, 228, 307, 601, 612
BstBAI YACGTR 2 cut(s) 124, 181
BstC8I GCNNGC 3 cut(s) 76, 221, 332
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 3 cut(s) 135, 144, 239
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 3 cut(s) 132, 141, 236
BstMCI CGRYCG 3 cut(s) 98, 200, 220
BstMWI GCNNNNNNNGC 3 cut(s) 103, 112, 524
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 180
BstUI CGCG 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 613
BstYI RGATCY 1 cut(s) 236
BstZI CGGCCG 3 cut(s) 95, 197, 217
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 3 cut(s) 97, 199, 219
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 76, 221, 332
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 74, 219
Cfr13I GGNCC 1 cut(s) 406
CpoI CGGWCCG 1 cut(s) 406
CseI GACGC 1 cut(s) 347
Csp6I GTAC 4 cut(s) 121, 190, 303, 421
CspI CGGWCCG 1 cut(s) 406
CviAII CATG 3 cut(s) 233, 460, 511
CviJI RGCY 9 cut(s) 17, 74, 97, 106, 115, 199, 219, 334, 527
CviKI_1 RGCY 9 cut(s) 17, 74, 97, 106, 115, 199, 219, 334, 527
CviQI GTAC 4 cut(s) 121, 190, 303, 421
DpnI GATC 3 cut(s) 134, 143, 238
DpnII GATC 3 cut(s) 132, 141, 236
DriI GACNNNNNGTC 1 cut(s) 636
EaeI YGGCCR 3 cut(s) 95, 197, 217
EagI CGGCCG 3 cut(s) 95, 197, 217
Eam1105I GACNNNNNGTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 164
EclXI CGGCCG 3 cut(s) 95, 197, 217
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 406
Eco47III AGCGCT 1 cut(s) 280
Eco52I CGGCCG 3 cut(s) 95, 197, 217
Eco72I CACGTG 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 3 cut(s) 236, 463, 514
FaiI YATR 9 cut(s) 234, 312, 327, 378, 444, 461, 506, 512, 597
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FatI CATG 3 cut(s) 232, 459, 510
Fnu4HI GCNGC 2 cut(s) 95, 217
FokI GGATG 1 cut(s) 480
Fsp4HI GCNGC 2 cut(s) 95, 217
GlaI GCGC 1 cut(s) 280
GluI GCNGC 2 cut(s) 95, 217
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 97, 199, 219
HapII CCGG 5 cut(s) 75, 107, 200, 220, 404
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 281
Hin1II CATG 3 cut(s) 236, 463, 514
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 1 cut(s) 206
HpaII CCGG 5 cut(s) 75, 107, 200, 220, 404
HphI GGTGA 1 cut(s) 555
Hpy166II GTNNAC 4 cut(s) 178, 303, 421, 563
Hpy188I TCNGA 5 cut(s) 71, 103, 259, 276, 645
Hpy188III TCNNGA 3 cut(s) 404, 606, 628
Hpy8I GTNNAC 4 cut(s) 178, 303, 421, 563
Hpy99I CGWCG 6 cut(s) 103, 121, 272, 341, 642, 645
HpyAV CCTTC 2 cut(s) 166, 406
HpyCH4III ACNGT 7 cut(s) 46, 67, 155, 228, 307, 601, 612
HpyCH4IV ACGT 5 cut(s) 123, 168, 180, 270, 637
HpyCH4V TGCA 4 cut(s) 178, 310, 426, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 112, 524
HpySE526I ACGT 5 cut(s) 123, 168, 180, 270, 637
Hsp92II CATG 3 cut(s) 236, 463, 514
HspAI GCGC 1 cut(s) 279
Kpn2I TCCGGA 1 cut(s) 403
KroI GCCGGC 2 cut(s) 74, 219
KroNI GCCGGC 2 cut(s) 76, 221
Kzo9I GATC 3 cut(s) 132, 141, 236
LmnI GCTCC 3 cut(s) 22, 103, 161
LpnPI CCDG 9 cut(s) 88, 120, 213, 233, 375, 417, 462, 510, 619
LweI GCATC 2 cut(s) 81, 426
MaeII ACGT 5 cut(s) 123, 168, 180, 270, 637
MalI GATC 3 cut(s) 134, 143, 238
MbiI CCGCTC 1 cut(s) 139
MboI GATC 3 cut(s) 132, 141, 236
MboII GAAGA 2 cut(s) 142, 241
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 2 cut(s) 180, 543
MluCI AATT 2 cut(s) 379, 589
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 6 cut(s) 81, 282, 325, 564, 594, 623
MroI TCCGGA 1 cut(s) 403
MroNI GCCGGC 2 cut(s) 74, 219
MspI CCGG 5 cut(s) 75, 107, 200, 220, 404
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 103, 112, 524
NaeI GCCGGC 2 cut(s) 76, 221
NciI CCSGG 1 cut(s) 108
NdeII GATC 3 cut(s) 132, 141, 236
NgoMIV GCCGGC 2 cut(s) 74, 219
NlaIII CATG 3 cut(s) 236, 463, 514
NlaIV GGNNCC 3 cut(s) 105, 238, 394
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 141
PdiI GCCGGC 2 cut(s) 76, 221
Pfl23II CGTACG 1 cut(s) 120
PkrI GCNGC 2 cut(s) 96, 218
PleI GAGTC 1 cut(s) 214
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 2 cut(s) 124, 181
PsiI TTATAA 1 cut(s) 444
PspCI CACGTG 1 cut(s) 181
PspLI CGTACG 1 cut(s) 120
PspN4I GGNNCC 3 cut(s) 105, 238, 394
PspPI GGNCC 1 cut(s) 406
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 4 cut(s) 122, 191, 304, 422
RsaNI GTAC 4 cut(s) 121, 190, 303, 421
Rsr2I CGGWCCG 1 cut(s) 406
RsrII CGGWCCG 1 cut(s) 406
SatI GCNGC 2 cut(s) 95, 217
Sau3AI GATC 3 cut(s) 132, 141, 236
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 2 cut(s) 180, 543
SfaNI GCATC 2 cut(s) 81, 426
SinI GGWCC 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 2 cut(s) 379, 589
SsiI CCGC 6 cut(s) 94, 139, 149, 159, 184, 216
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 7 cut(s) 46, 67, 155, 228, 307, 601, 612
TaiI ACGT 5 cut(s) 126, 171, 183, 273, 640
TaqI TCGA 6 cut(s) 135, 144, 336, 372, 383, 627
TaqII GACCGA 1 cut(s) 423
TasI AATT 2 cut(s) 379, 589
TatI WGTACW 2 cut(s) 302, 420
TauI GCSGC 2 cut(s) 97, 219
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 221, 482
TspRI CASTG 1 cut(s) 49
VneI GTGCAC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.