RchiOBHm_Chr6g0266611

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005976
Physical Location & Seq
Forward (+)
23114414 .. 23118616
4203 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23911

Sequence Viewer

Length: 651 bp
ATGGCGAAACCAAAAGCTCCGAGACAAACCCTCAACTCCTACACTGTCAAACCCATCAACAAGACCGTCAGAGCCGGCGACTGCGTTCTGATGCGGCCGTCGGAGCCGGGGAAGCCGTCCTACGTGGCGAAGATCGAGCGGATCGAGGCGGACAGCCGCGGAGCCAACGTCAAGGTCCACGTGCGGTGGTACTACCGGCCGGAGGAGTCGATCGGCGGCCGGAGACAGTTCCATGGATCCAAGGAGGTTTTTCTCTCCGACCACCACGACGTGCAGAGCGCCGACACCATAGAGGGCAAGTGTACGGTGCACACGTTCAGGGGGTATAGCAAGCTCGACGCGGTTGGAAACGACGACTTCTTTTGTCGTTTCGAGTATAATTCCACTACTGGTTCCTTCAATCCTGACCGAGTCGCCGTGTACTGCAAGTGTGAGATGCCTTACAACCCTGATGACCTCATGGTTCAGTGTGAAGGTTGCAGTGATTGGTTTCATCCTGCTTGTATAGACATGAGTGCAGAGGAAGCTGAAAGACTTGACCACTTTTTTTGTGAAGGTTGTTCTCCCGAGGGACAAAAGAAGTTGGAGAATTCGCATACTGTCTCCAGACAGTTGGATACAAAGGTGGAGACAAAACGTCGCCGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

216

Amino Acids

24.72

Weight (kDa)

7.56

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 22 - 136 1.6e-24 BAH domain
PHD PF00628 142 - 187 1.6e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 2 cut(s) 159, 341
AciI CCGC 8 cut(s) 94, 139, 149, 157, 159, 184, 216, 341
AclWI GGATC 3 cut(s) 149, 231, 244
AcoI YGGCCR 3 cut(s) 95, 197, 217
AcsI RAATTY 1 cut(s) 589
AcvI CACGTG 1 cut(s) 181
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 3 cut(s) 191, 304, 422
AfiI CCNNNNNNNGG 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 400
AhdI GACNNNNNGTC 1 cut(s) 636
AjiI CACGTC 1 cut(s) 271
AluBI AGCT 3 cut(s) 17, 334, 527
AluI AGCT 3 cut(s) 17, 334, 527
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 4 cut(s) 16, 217, 607, 623
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 3 cut(s) 149, 231, 244
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 3 cut(s) 95, 197, 217
ApaLI GTGCAC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 589
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 312
BaeI ACNNNNGTAYC 2 cut(s) 609, 642
BamHI GGATCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbrPI CACGTG 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 312
BccI CCATC 1 cut(s) 62
BceAI ACGGC 3 cut(s) 82, 100, 401
BciVI GTATCC 1 cut(s) 610
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 4 cut(s) 16, 217, 607, 623
BfoI RGCGCY 1 cut(s) 282
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 3 cut(s) 95, 157, 217
BlsI GCNGC 3 cut(s) 96, 158, 218
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 636
BmeT110I CYCGRG 1 cut(s) 566
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 4 cut(s) 105, 163, 238, 394
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 81, 426
BpmI CTGGAG 1 cut(s) 589
BpuMI CCSGG 1 cut(s) 108
BsaAI YACGTR 2 cut(s) 124, 181
BsaJI CCNNGG 5 cut(s) 107, 157, 232, 240, 567
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 2 cut(s) 74, 195
Bse1I ACTGG 1 cut(s) 394
BseDI CCNNGG 5 cut(s) 107, 157, 232, 240, 567
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 312
BseX3I CGGCCG 3 cut(s) 95, 197, 217
BsgI GTGCAG 2 cut(s) 293, 537
Bsh1236I CGCG 2 cut(s) 159, 341
Bsh1285I CGRYCG 4 cut(s) 98, 200, 213, 220
BshFI GGCC 3 cut(s) 97, 199, 219
BsiEI CGRYCG 4 cut(s) 98, 200, 213, 220
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 6 cut(s) 75, 107, 196, 200, 220, 643
BslFI GGGAC 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 4 cut(s) 16, 217, 607, 623
BsmFI GGGAC 1 cut(s) 585
BsnI GGCC 3 cut(s) 97, 199, 219
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 4 cut(s) 132, 141, 210, 236
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 8 cut(s) 94, 139, 149, 157, 159, 184, 216, 341
BspANI GGCC 3 cut(s) 97, 199, 219
BspFNI CGCG 2 cut(s) 159, 341
BspLI GGNNCC 4 cut(s) 105, 163, 238, 394
BspPI GGATC 3 cut(s) 149, 231, 244
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 74, 195
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 2 cut(s) 74, 195
BssECI CCNNGG 5 cut(s) 107, 157, 232, 240, 567
BssMI GATC 4 cut(s) 132, 141, 210, 236
BssT1I CCWWGG 2 cut(s) 232, 240
Bst4CI ACNGT 6 cut(s) 46, 67, 228, 307, 601, 612
BstBAI YACGTR 2 cut(s) 124, 181
BstC8I GCNNGC 2 cut(s) 76, 332
BstDSI CCRYGG 2 cut(s) 157, 232
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 2 cut(s) 159, 341
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 135, 144, 213, 239
BstMAI GTCTC 4 cut(s) 16, 217, 607, 623
BstMBI GATC 4 cut(s) 132, 141, 210, 236
BstMCI CGRYCG 4 cut(s) 98, 200, 213, 220
BstMWI GCNNNNNNNGC 3 cut(s) 103, 112, 524
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 2 cut(s) 159, 341
BstX2I RGATCY 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 613
BstYI RGATCY 1 cut(s) 236
BstZI CGGCCG 3 cut(s) 95, 197, 217
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 3 cut(s) 97, 199, 219
BtgI CCRYGG 2 cut(s) 157, 232
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 42, 473, 487
Cac8I GCNNGC 2 cut(s) 76, 332
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 74, 195
Cfr13I GGNCC 1 cut(s) 175
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 1 cut(s) 347
Csp6I GTAC 3 cut(s) 190, 303, 421
CspCI CAANNNNNGTGG 2 cut(s) 530, 565
CviAII CATG 3 cut(s) 233, 460, 511
CviQI GTAC 3 cut(s) 190, 303, 421
DpnI GATC 4 cut(s) 134, 143, 212, 238
DpnII GATC 4 cut(s) 132, 141, 210, 236
DraIII CACNNNGTG 1 cut(s) 271
DriI GACNNNNNGTC 1 cut(s) 636
EaeI YGGCCR 3 cut(s) 95, 197, 217
EagI CGGCCG 3 cut(s) 95, 197, 217
Eam1105I GACNNNNNGTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 164
EclXI CGGCCG 3 cut(s) 95, 197, 217
Eco130I CCWWGG 2 cut(s) 232, 240
Eco47I GGWCC 1 cut(s) 175
Eco52I CGGCCG 3 cut(s) 95, 197, 217
Eco72I CACGTG 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 232, 240
ErhI CCWWGG 2 cut(s) 232, 240
FaeI CATG 3 cut(s) 236, 463, 514
FaiI YATR 8 cut(s) 234, 290, 327, 378, 461, 506, 512, 597
FaqI GGGAC 1 cut(s) 585
FatI CATG 3 cut(s) 232, 459, 510
Fnu4HI GCNGC 3 cut(s) 95, 157, 217
FokI GGATG 1 cut(s) 480
Fsp4HI GCNGC 3 cut(s) 95, 157, 217
GlaI GCGC 1 cut(s) 280
GluI GCNGC 3 cut(s) 95, 157, 217
GsuI CTGGAG 1 cut(s) 589
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 97, 199, 219
HapII CCGG 6 cut(s) 75, 107, 196, 200, 220, 643
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 281
Hin1II CATG 3 cut(s) 236, 463, 514
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 2 cut(s) 206, 411
HpaII CCGG 6 cut(s) 75, 107, 196, 200, 220, 643
Hpy166II GTNNAC 4 cut(s) 178, 303, 310, 421
Hpy188I TCNGA 5 cut(s) 21, 71, 90, 103, 259
Hpy188III TCNNGA 3 cut(s) 404, 566, 606
Hpy8I GTNNAC 4 cut(s) 178, 303, 310, 421
Hpy99I CGWCG 5 cut(s) 103, 272, 341, 356, 642
HpyAV CCTTC 3 cut(s) 406, 467, 548
HpyCH4III ACNGT 6 cut(s) 46, 67, 228, 307, 601, 612
HpyCH4IV ACGT 6 cut(s) 123, 168, 180, 270, 314, 637
HpyCH4V TGCA 5 cut(s) 274, 310, 426, 480, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 112, 524
HpySE526I ACGT 6 cut(s) 123, 168, 180, 270, 314, 637
Hsp92II CATG 3 cut(s) 236, 463, 514
HspAI GCGC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 4 cut(s) 132, 141, 210, 236
LmnI GCTCC 3 cut(s) 22, 103, 161
LweI GCATC 2 cut(s) 81, 426
MaeII ACGT 6 cut(s) 123, 168, 180, 270, 314, 637
MalI GATC 4 cut(s) 134, 143, 212, 238
MbiI CCGCTC 1 cut(s) 139
MboI GATC 4 cut(s) 132, 141, 210, 236
MboII GAAGA 1 cut(s) 142
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 379, 589
MlyI GAGTC 2 cut(s) 215, 420
MmeI TCCRAC 5 cut(s) 81, 282, 325, 564, 594
MnlI CCTC 9 cut(s) 41, 139, 196, 238, 286, 467, 514, 562, 639
MroNI GCCGGC 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 6 cut(s) 75, 107, 196, 200, 220, 643
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 2 cut(s) 159, 341
MwoI GCNNNNNNNGC 3 cut(s) 103, 112, 524
NaeI GCCGGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 232
NdeII GATC 4 cut(s) 132, 141, 210, 236
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 3 cut(s) 236, 463, 514
NlaIV GGNNCC 4 cut(s) 105, 163, 238, 394
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 311
PdiI GCCGGC 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 3 cut(s) 96, 158, 218
Ple19I CGATCG 1 cut(s) 213
PleI GAGTC 2 cut(s) 214, 419
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 2 cut(s) 214, 419
Ppu21I YACGTR 2 cut(s) 124, 181
PspCI CACGTG 1 cut(s) 181
PspN4I GGNNCC 4 cut(s) 105, 163, 238, 394
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 410
PvuI CGATCG 1 cut(s) 213
RsaI GTAC 3 cut(s) 191, 304, 422
RsaNI GTAC 3 cut(s) 190, 303, 421
SacII CCGCGG 1 cut(s) 160
SatI GCNGC 3 cut(s) 95, 157, 217
Sau3AI GATC 4 cut(s) 132, 141, 210, 236
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 2 cut(s) 215, 420
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 2 cut(s) 81, 426
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 1 cut(s) 175
Sse9I AATT 2 cut(s) 379, 589
SsiI CCGC 8 cut(s) 94, 139, 149, 157, 159, 184, 216, 341
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 232, 240
TaaI ACNGT 6 cut(s) 46, 67, 228, 307, 601, 612
TaiI ACGT 6 cut(s) 126, 171, 183, 273, 317, 640
TaqI TCGA 5 cut(s) 135, 144, 209, 336, 372
TaqII GACCGA 1 cut(s) 423
TasI AATT 2 cut(s) 379, 589
TatI WGTACW 1 cut(s) 420
TauI GCSGC 3 cut(s) 97, 159, 219
TscAI CASTG 3 cut(s) 49, 473, 487
TspDTI ATGAA 1 cut(s) 482
TspRI CASTG 3 cut(s) 49, 473, 487
Tth111I GACNNNGTC 1 cut(s) 410
VneI GTGCAC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.