Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005976

Physical Location & Seq

Genomic Coordinates Reverse (-)

10401275 .. 10405100

Gene Structure 3826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1059600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCAAACCCAAAGCTCCGAGGCGAACGATCGACTCCTACACCGTCAAACCCATCAACAAAACCGTCAGAGCCGGGGACTGCGTCCTGATGCGCCCGTCGGAGCCGGGGAAGCCGTCCTACGTGGCCAAGATCGAGCGGATCGAGGCCGACAGCCGCGGCTCCAACGTCAAGGTCCACGTCCAGTGGTACTATCGGCCCGAGGAGTCGCTCGGTGGCCGGAGGCAGTTTCACGGCTCCAAAGAGGTCTTCCTCTCCGATCACCACGATGTTCAGAGCGCCGACACCATCGAGGCCAAGTGTACGGTCCACACCTTCAAGAGCTACACCAAGCTCGACGCTGTTGGAAACGACGATTTCTTCTGTCGTTTTGATTATAATTCCTCCACTGGGGCTTTCAATCCCGACCGCGTTGCCGTGTATTGCAAGTGTGAGATGCCTTACAACCCTGATGACCTCATGGTTCAATGTGAAGGTTGTAGTGATTGGTTTCATCCTGCTTGTATAAACATGAATATACAGGAAGCCAAAAGACTAGATCACTTCTTCTGTGAAGGCTGCTCTTCCGAGAGTCAAAAGAAATTGCAGAATTCCCATACTGCTTCCAGACACCCGGATACAAAGGTGGATACAAAGCGGCGTCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

217

Amino Acids

24.76

Weight (kDa)

8.63

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	22 - 135	8.9e-25	BAH domain
PHD	PF00628	142 - 187	1.4e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39100 AT4G39100
fragaria_vesca	FvH4_2g09891 FvH4_2g09891
malus_domestica	MD05G1059600.v1.1 MD10G1067700.v1.1
prunus_persica	Prupe.8G089400_v2.0.a1 Prupe.8G089400_v2.0.a1 Prupe.8G089400_v2.0.a1
pyrus_communis	pycom05g05090 pycom10g05350
rosa_chinensis	RchiOBHm_Chr6g0266611 RchiOBHm_Chr6g0266801
rosa_laevigata	RLG00000014090 RLG00000014095
rosa_multiflora	Rmu_co8489239.1_g000001 Rmu_sc0006413.1_g000021
rosa_roxburghii	Rroxscaffold_7G00201610
rosa_rugosa	Rorug06G0025600 Rorug06G0025600 Rorug06G0025700
rosa_samantha	Rh6AG147100 Rh6BG147200 Rh6CG142900 Rh6DG131900
rosa_wichuraiana	Rw6G012610 Rw6G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	2 cut(s)	159, 411
AciI	CCGC	5 cut(s)	139, 157, 159, 409, 637
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	3 cut(s)	3, 126, 217
AcsI	RAATTY	1 cut(s)	589
AcyI	GRCGYC	1 cut(s)	640
AfaI	GTAC	2 cut(s)	191, 304
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	319, 400, 467
AjiI	CACGTC	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	17, 324, 334
AluI	AGCT	3 cut(s)	17, 324, 334
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	6 cut(s)	3, 126, 147, 197, 217, 294
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	1 cut(s)	589
AspLEI	GCGC	2 cut(s)	96, 281
AspS9I	GGNCC	3 cut(s)	175, 198, 307
AsuC2I	CCSGG	3 cut(s)	76, 108, 614
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	175, 307
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BalI	TGGCCA	2 cut(s)	5, 128
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	2 cut(s)	62, 296
BceAI	ACGGC	3 cut(s)	100, 250, 401
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciVI	GTATCC	2 cut(s)	610, 622
BcnI	CCSGG	3 cut(s)	76, 108, 614
BfaI	CTAG	1 cut(s)	536
BfoI	RGCGCY	1 cut(s)	282
BfuI	GTATCC	2 cut(s)	610, 622
BisI	GCNGC	4 cut(s)	157, 160, 559, 638
BlsI	GCNGC	4 cut(s)	158, 161, 560, 639
Bme1390I	CCNGG	3 cut(s)	76, 108, 614
Bme18I	GGWCC	2 cut(s)	175, 307
BmeT110I	CYCGRG	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	3 cut(s)	175, 198, 307
BmiI	GGNNCC	3 cut(s)	105, 163, 238
BmrFI	CCNGG	3 cut(s)	76, 108, 614
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	81, 426
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	241
BpuMI	CCSGG	3 cut(s)	76, 108, 614
BsaAI	YACGTR	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	640
BsaJI	CCNNGG	5 cut(s)	20, 75, 107, 157, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	2 cut(s)	184, 394
BseDI	CCNNGG	5 cut(s)	20, 75, 107, 157, 201
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	184, 394
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	545
Bsh1236I	CGCG	2 cut(s)	159, 411
Bsh1285I	CGRYCG	2 cut(s)	33, 409
BshFI	GGCC	6 cut(s)	5, 128, 149, 199, 219, 296
BsiEI	CGRYCG	2 cut(s)	33, 409
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	4 cut(s)	75, 107, 220, 614
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	6 cut(s)	5, 128, 149, 199, 219, 296
BsoBI	CYCGRG	1 cut(s)	200
Bsp143I	GATC	5 cut(s)	30, 132, 141, 259, 538
BspACI	CCGC	5 cut(s)	139, 157, 159, 409, 637
BspANI	GGCC	6 cut(s)	5, 128, 149, 199, 219, 296
BspFNI	CGCG	2 cut(s)	159, 411
BspLI	GGNNCC	3 cut(s)	105, 163, 238
BspPI	GGATC	1 cut(s)	149
BspQI	GCTCTTC	1 cut(s)	568
BsrBI	CCGCTC	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	184, 394
BssECI	CCNNGG	5 cut(s)	20, 75, 107, 157, 201
BssMI	GATC	5 cut(s)	30, 132, 141, 259, 538
BssNI	GRCGYC	1 cut(s)	640
Bst4CI	ACNGT	3 cut(s)	46, 67, 307
Bst6I	CTCTTC	1 cut(s)	568
BstACI	GRCGYC	1 cut(s)	640
BstBAI	YACGTR	1 cut(s)	124
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	2 cut(s)	159, 411
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	96, 281
BstKTI	GATC	5 cut(s)	33, 135, 144, 262, 541
BstMBI	GATC	5 cut(s)	30, 132, 141, 259, 538
BstMCI	CGRYCG	2 cut(s)	33, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstSCI	CCNGG	3 cut(s)	74, 106, 612
BstUI	CGCG	2 cut(s)	159, 411
BstV1I	GCAGC	1 cut(s)	545
BstV2I	GAAGAC	1 cut(s)	241
BsuI	GTATCC	2 cut(s)	610, 622
BsuRI	GGCC	6 cut(s)	5, 128, 149, 199, 219, 296
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	191, 387
CfoI	GCGC	2 cut(s)	96, 281
Cfr13I	GGNCC	3 cut(s)	175, 198, 307
Cfr42I	CCGCGG	1 cut(s)	160
CseI	GACGC	3 cut(s)	73, 347, 629
Csp6I	GTAC	2 cut(s)	190, 303
CviAII	CATG	2 cut(s)	460, 511
CviQI	GTAC	2 cut(s)	190, 303
DpnI	GATC	5 cut(s)	32, 134, 143, 261, 540
DpnII	GATC	5 cut(s)	30, 132, 141, 259, 538
EaeI	YGGCCR	3 cut(s)	3, 126, 217
Eam1104I	CTCTTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	175, 307
Eco88I	CYCGRG	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	589
FaeI	CATG	2 cut(s)	463, 514
FaiI	YATR	6 cut(s)	378, 461, 506, 512, 518, 597
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	459, 510
Fnu4HI	GCNGC	4 cut(s)	157, 160, 559, 638
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	4 cut(s)	157, 160, 559, 638
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	2 cut(s)	95, 280
GluI	GCNGC	4 cut(s)	157, 160, 559, 638
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	6 cut(s)	5, 128, 149, 199, 219, 296
HapII	CCGG	4 cut(s)	75, 107, 220, 614
HgaI	GACGC	3 cut(s)	73, 347, 629
HhaI	GCGC	2 cut(s)	96, 281
Hin1I	GRCGYC	1 cut(s)	640
Hin1II	CATG	2 cut(s)	463, 514
Hin6I	GCGC	2 cut(s)	94, 279
HinP1I	GCGC	2 cut(s)	94, 279
HinfI	GANTC	3 cut(s)	35, 206, 571
HpaII	CCGG	4 cut(s)	75, 107, 220, 614
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	178, 303, 310
Hpy188I	TCNGA	7 cut(s)	21, 71, 103, 259, 276, 568, 645
Hpy188III	TCNNGA	4 cut(s)	88, 319, 404, 606
Hpy8I	GTNNAC	3 cut(s)	178, 303, 310
Hpy99I	CGWCG	4 cut(s)	103, 341, 356, 645
HpyAV	CCTTC	3 cut(s)	325, 467, 548
HpyCH4III	ACNGT	3 cut(s)	46, 67, 307
HpyCH4IV	ACGT	3 cut(s)	123, 168, 180
HpyCH4V	TGCA	2 cut(s)	426, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpySE526I	ACGT	3 cut(s)	123, 168, 180
Hsp92I	GRCGYC	1 cut(s)	640
Hsp92II	CATG	2 cut(s)	463, 514
HspAI	GCGC	2 cut(s)	94, 279
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	30, 132, 141, 259, 538
LguI	GCTCTTC	1 cut(s)	568
LmnI	GCTCC	4 cut(s)	22, 103, 167, 242
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	2 cut(s)	81, 426
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	3 cut(s)	123, 168, 180
MalI	GATC	5 cut(s)	32, 134, 143, 261, 540
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	5 cut(s)	30, 132, 141, 259, 538
MboII	GAAGA	4 cut(s)	241, 352, 538, 555
MlsI	TGGCCA	2 cut(s)	5, 128
MluCI	AATT	3 cut(s)	379, 581, 589
MluNI	TGGCCA	2 cut(s)	5, 128
MlyI	GAGTC	3 cut(s)	29, 215, 580
MmeI	TCCRAC	4 cut(s)	81, 189, 325, 623
Mox20I	TGGCCA	2 cut(s)	5, 128
MscI	TGGCCA	2 cut(s)	5, 128
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	2 cut(s)	5, 128
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	4 cut(s)	75, 107, 220, 614
MspR9I	CCNGG	3 cut(s)	76, 108, 614
MvnI	CGCG	2 cut(s)	159, 411
MwoI	GCNNNNNNNGC	1 cut(s)	112
NciI	CCSGG	3 cut(s)	76, 108, 614
NdeII	GATC	5 cut(s)	30, 132, 141, 259, 538
NlaIII	CATG	2 cut(s)	463, 514
NlaIV	GGNNCC	3 cut(s)	105, 163, 238
PciSI	GCTCTTC	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	158, 161, 560, 639
Ple19I	CGATCG	1 cut(s)	33
PleI	GAGTC	3 cut(s)	29, 214, 579
PpsI	GAGTC	3 cut(s)	29, 214, 579
Ppu21I	YACGTR	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	105, 163, 238
PspPI	GGNCC	3 cut(s)	175, 198, 307
PsyI	GACNNNGTC	1 cut(s)	83
PvuI	CGATCG	1 cut(s)	33
RsaI	GTAC	2 cut(s)	191, 304
RsaNI	GTAC	2 cut(s)	190, 303
RseI	CAYNNNNRTG	1 cut(s)	267
SacII	CCGCGG	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	568
SatI	GCNGC	4 cut(s)	157, 160, 559, 638
Sau3AI	GATC	5 cut(s)	30, 132, 141, 259, 538
Sau96I	GGNCC	3 cut(s)	175, 198, 307
SchI	GAGTC	3 cut(s)	29, 215, 580
ScrFI	CCNGG	3 cut(s)	76, 108, 614
SfaNI	GCATC	2 cut(s)	81, 426
Sfr303I	CCGCGG	1 cut(s)	160
SgrBI	CCGCGG	1 cut(s)	160
SinI	GGWCC	2 cut(s)	175, 307
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	3 cut(s)	379, 581, 589
SsiI	CCGC	5 cut(s)	139, 157, 159, 409, 637
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	3 cut(s)	74, 106, 612
TaaI	ACNGT	3 cut(s)	46, 67, 307
TaiI	ACGT	3 cut(s)	126, 171, 183
TaqI	TCGA	5 cut(s)	33, 135, 144, 291, 336
TasI	AATT	3 cut(s)	379, 581, 589
TauI	GCSGC	3 cut(s)	159, 162, 640
TscAI	CASTG	2 cut(s)	191, 394
TseI	GCWGC	1 cut(s)	558
TspDTI	ATGAA	2 cut(s)	482, 527
TspRI	CASTG	2 cut(s)	191, 394
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	2 cut(s)	175, 307
XapI	RAATTY	1 cut(s)	589
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.