AT4G39390

Triose-phosphate Transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009931
Physical Location & Seq
Forward (+)
18315545 .. 18318226
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39390.3

Sequence Viewer

Length: 1014 bp
ATGTTTAAAAAAATGAGTGCTACTACAAGCAAGACGGATCAGAAAGCGGCATTAGACATTGCATCATGGCTATTCAATGTGGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTATGGCTTTAGTTTCGCTACTACATTAACCGGTTTGCATTTCGGAACAACGACATTGTTGACAACTTTCTTGACATGGCTTGGTTATATCCAACCTTCTCAGCTTCCTTGGCCTGATCTTTTGAAATTCGTTTTGTTCGCTAACTTCTCTATCGTTGGGATGAACGTCAGTCTCATGTGGAATTCTGTTGGCTTCTACCAGATTGCGAAGCTGAGTATGATCCCGGTTTCTTGTCTTCTAGAAGTTATGCTTGACAATGTCAGGTATTCAAGAGATACAAAGCTTAGCATTTTGTTAGTTCTTGCTGGTGTTGCCGTCTGTACTGTAACCGATGTTAGTGTCAATCTCAACGGATTTCTAGCTGCCGCTATTGCTGTCTGGAGCACCGCGCTTCAGCAATACTATGTACATTATCTACAACGGAAATATTCACTCGGTTCTTTCAATTTACTGGCGCATACCGCTCCAGTTCAAGCTGCGTCATTGTTGTTGGTCGGACCATTTCTAGACTACTGGTTGACTAACCAAAGAGTGGATGCATACAACTTTTCATTTGTATCTCTGTTCTTCTTAATACTCTCGTGCAGTATCGCGGTTGGGACCAATCTCAGCCAATTCATCTGTATTGGAAGATTCACGGCGGTGTCTTTCCAAGTACTTGGTCACATGAAGACAATTCTGGTTTTGGTTTTGGGATTCACTTTCTTCGGTAAGGAAGGATTAAACCTACAAGTAGTGCTTGGAATGCTGATTGCTATACTCGGTATGATCTGGTACGGTAATGCATCTTCTAAACCGGGTGGTAAAGAACGTCGTAGCCTGTCTATTCCCATAACCAAGTCACAGAAACTATCTGAAACAAACGAATCTGATGAAAAGGTGTAG

Protein Analysis

337

Amino Acids

37.12

Weight (kDa)

9.28

Isoelectric Point (pI)

25.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 24 - 298 1.5e-15 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39390 AT4G39390 AT4G39390
fragaria_vesca FvH4_1g23140
malus_domestica MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis pycom01g04620 pycom15g28940
rosa_chinensis RchiOBHm_Chr2g0117861
rosa_laevigata RLG00000018380
rosa_multiflora Rmu_sc0011918.1_g000001
rosa_roxburghii Rroxscaffold_2G00126160
rosa_rugosa Rorug02G0214600
rosa_samantha Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana Rw2G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 661
AccBSI CCGCTC 1 cut(s) 593
AccII CGCG 2 cut(s) 518, 722
AciI CCGC 6 cut(s) 47, 495, 516, 591, 722, 770
AclWI GGATC 2 cut(s) 45, 343
AcsI RAATTY 2 cut(s) 254, 310
AcuI CTGAAG 1 cut(s) 506
AfaI GTAC 4 cut(s) 451, 537, 786, 905
AfiI CCNNNNNNNGG 1 cut(s) 661
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 5 cut(s) 76, 253, 399, 574, 602
AleI CACNNNNGTG 1 cut(s) 770
AluBI AGCT 6 cut(s) 116, 232, 340, 412, 491, 605
AluI AGCT 6 cut(s) 116, 232, 340, 412, 491, 605
Alw21I GWGCWC 1 cut(s) 515
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 2 cut(s) 45, 343
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 491, 605
ApoI RAATTY 2 cut(s) 254, 310
AsiGI ACCGGT 1 cut(s) 158
AspLEI GCGC 2 cut(s) 520, 586
AspS9I GGNCC 2 cut(s) 626, 729
AsuC2I CCSGG 2 cut(s) 353, 927
AvaII GGWCC 2 cut(s) 626, 729
BarI GAAGNNNNNNTAC 2 cut(s) 901, 933
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 2 cut(s) 356, 806
Bbv12I GWGCWC 1 cut(s) 515
BbvI GCAGC 2 cut(s) 478, 592
BceAI ACGGC 2 cut(s) 428, 783
BcnI CCSGG 2 cut(s) 353, 927
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 3 cut(s) 368, 488, 635
BisI GCNGC 4 cut(s) 48, 492, 495, 606
BlpI GCTNAGC 1 cut(s) 413
BlsI GCNGC 4 cut(s) 49, 493, 496, 607
BmcAI AGTACT 1 cut(s) 786
Bme1390I CCNGG 2 cut(s) 353, 927
Bme18I GGWCC 2 cut(s) 626, 729
BmgT120I GGNCC 2 cut(s) 626, 729
BmiI GGNNCC 1 cut(s) 730
BmrFI CCNGG 2 cut(s) 353, 927
BmsI GCATC 3 cut(s) 71, 655, 923
BpiI GAAGAC 2 cut(s) 356, 806
BpmI CTGGAG 2 cut(s) 529, 579
Bpu1102I GCTNAGC 1 cut(s) 413
BpuMI CCSGG 2 cut(s) 353, 927
BsaJI CCNNGG 1 cut(s) 236
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 661
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 585, 596, 647
Bse3DI GCAATG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 3 cut(s) 99, 294, 670
BseLI CCNNNNNNNGG 1 cut(s) 661
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 3 cut(s) 242, 332, 751
BseNI ACTGG 3 cut(s) 585, 596, 647
BseXI GCAGC 2 cut(s) 478, 592
BsgI GTGCAG 1 cut(s) 733
Bsh1236I CGCG 2 cut(s) 518, 722
BshFI GGCC 1 cut(s) 241
BshTI ACCGGT 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 515
BsiSI CCGG 3 cut(s) 159, 353, 926
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 1 cut(s) 661
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 742
BsmI GAATGC 1 cut(s) 879
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 515
Bsp1407I TGTACA 1 cut(s) 535
Bsp143I GATC 4 cut(s) 37, 244, 348, 897
Bsp1720I GCTNAGC 1 cut(s) 413
BspACI CCGC 6 cut(s) 47, 495, 516, 591, 722, 770
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 3 cut(s) 241, 333, 750
BspFNI CGCG 2 cut(s) 518, 722
BspLI GGNNCC 1 cut(s) 730
BspPI GGATC 2 cut(s) 45, 343
BsrBI CCGCTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 535
BsrI ACTGG 3 cut(s) 585, 596, 647
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 4 cut(s) 37, 244, 348, 897
BssSI CACGAG 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 709
Bst4CI ACNGT 2 cut(s) 454, 908
BstAUI TGTACA 1 cut(s) 535
BstDEI CTNAG 4 cut(s) 228, 341, 413, 737
BstF5I GGATG 3 cut(s) 99, 294, 670
BstFNI CGCG 2 cut(s) 518, 722
BstHHI GCGC 2 cut(s) 520, 586
BstKTI GATC 4 cut(s) 40, 247, 351, 900
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 4 cut(s) 37, 244, 348, 897
BstMWI GCNNNNNNNGC 6 cut(s) 122, 238, 440, 500, 590, 874
BstSCI CCNGG 2 cut(s) 351, 925
BstUI CGCG 2 cut(s) 518, 722
BstV1I GCAGC 2 cut(s) 478, 592
BstV2I GAAGAC 2 cut(s) 356, 806
BstXI CCANNNNNNTGG 1 cut(s) 788
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 3 cut(s) 99, 294, 670
CfoI GCGC 2 cut(s) 520, 586
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 626, 729
CseI GACGC 1 cut(s) 597
Csp6I GTAC 4 cut(s) 450, 536, 785, 904
CspAI ACCGGT 1 cut(s) 158
CviAII CATG 4 cut(s) 66, 204, 304, 796
CviQI GTAC 4 cut(s) 450, 536, 785, 904
DdeI CTNAG 4 cut(s) 228, 341, 413, 737
DpnI GATC 4 cut(s) 39, 246, 350, 899
DpnII GATC 4 cut(s) 37, 244, 348, 897
DraI TTTAAA 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 626, 729
Eco57I CTGAAG 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 236
EcoT22I ATGCAT 2 cut(s) 670, 916
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 4 cut(s) 69, 207, 307, 799
FalI AAGNNNNNCTT 4 cut(s) 363, 395, 852, 884
FaqI GGGAC 1 cut(s) 742
FatI CATG 4 cut(s) 65, 203, 303, 795
Fnu4HI GCNGC 4 cut(s) 48, 492, 495, 606
FokI GGATG 3 cut(s) 86, 301, 677
Fsp4HI GCNGC 4 cut(s) 48, 492, 495, 606
FspBI CTAG 3 cut(s) 368, 488, 635
GlaI GCGC 2 cut(s) 519, 585
GluI GCNGC 4 cut(s) 48, 492, 495, 606
GsuI CTGGAG 2 cut(s) 529, 579
HaeIII GGCC 1 cut(s) 241
HapII CCGG 3 cut(s) 159, 353, 926
HgaI GACGC 1 cut(s) 597
HhaI GCGC 2 cut(s) 520, 586
Hin1II CATG 4 cut(s) 69, 207, 307, 799
Hin6I GCGC 2 cut(s) 518, 584
HinP1I GCGC 2 cut(s) 518, 584
HincII GTYRAC 3 cut(s) 109, 189, 648
HindII GTYRAC 3 cut(s) 109, 189, 648
HindIII AAGCTT 2 cut(s) 114, 410
HinfI GANTC 4 cut(s) 96, 762, 825, 995
HpaI GTTAAC 1 cut(s) 109
HpaII CCGG 3 cut(s) 159, 353, 926
Hpy166II GTNNAC 3 cut(s) 109, 189, 648
Hpy188I TCNGA 5 cut(s) 42, 173, 626, 985, 1000
Hpy188III TCNNGA 5 cut(s) 199, 368, 399, 508, 635
Hpy8I GTNNAC 3 cut(s) 109, 189, 648
Hpy99I CGWCG 1 cut(s) 945
HpyAV CCTTC 2 cut(s) 234, 839
HpyCH4III ACNGT 2 cut(s) 454, 908
HpyCH4IV ACGT 2 cut(s) 294, 940
HpyCH4V TGCA 5 cut(s) 62, 166, 668, 714, 914
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 238, 440, 500, 590, 874
HpyF3I CTNAG 4 cut(s) 228, 341, 413, 737
HpySE526I ACGT 2 cut(s) 294, 940
Hsp92II CATG 4 cut(s) 69, 207, 307, 799
HspAI GCGC 2 cut(s) 518, 584
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 4 cut(s) 37, 244, 348, 897
LmnI GCTCC 2 cut(s) 510, 598
Lsp1109I GCAGC 2 cut(s) 478, 592
LweI GCATC 3 cut(s) 71, 655, 923
MaeI CTAG 3 cut(s) 368, 488, 635
MaeII ACGT 2 cut(s) 294, 940
MaeIII GTNAC 4 cut(s) 82, 454, 791, 969
MalI GATC 4 cut(s) 39, 246, 350, 899
MbiI CCGCTC 1 cut(s) 593
MboI GATC 4 cut(s) 37, 244, 348, 897
MboII GAAGA 6 cut(s) 356, 688, 771, 811, 826, 909
MhlI GDGCHC 1 cut(s) 515
MluCI AATT 5 cut(s) 254, 310, 574, 743, 804
MmeI TCCRAC 3 cut(s) 73, 244, 604
MnlI CCTC 1 cut(s) 113
Mph1103I ATGCAT 2 cut(s) 670, 916
MseI TTAA 6 cut(s) 6, 108, 119, 155, 701, 851
MslI CAYNNNNRTG 1 cut(s) 770
MspI CCGG 3 cut(s) 159, 353, 926
MspR9I CCNGG 2 cut(s) 353, 927
Mva1269I GAATGC 1 cut(s) 879
MvnI CGCG 2 cut(s) 518, 722
MwoI GCNNNNNNNGC 6 cut(s) 122, 238, 440, 500, 590, 874
NciI CCSGG 2 cut(s) 353, 927
NdeII GATC 4 cut(s) 37, 244, 348, 897
NlaIII CATG 4 cut(s) 69, 207, 307, 799
NlaIV GGNNCC 1 cut(s) 730
NmuCI GTSAC 2 cut(s) 791, 969
NsiI ATGCAT 2 cut(s) 670, 916
OliI CACNNNNGTG 1 cut(s) 770
PctI GAATGC 1 cut(s) 879
PfeI GAWTC 4 cut(s) 96, 762, 825, 995
PflFI GACNNNGTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 661
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 4 cut(s) 49, 493, 496, 607
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 2 cut(s) 626, 729
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 4 cut(s) 451, 537, 786, 905
RsaNI GTAC 4 cut(s) 450, 536, 785, 904
RseI CAYNNNNRTG 1 cut(s) 770
SaqAI TTAA 6 cut(s) 6, 108, 119, 155, 701, 851
SatI GCNGC 4 cut(s) 48, 492, 495, 606
Sau3AI GATC 4 cut(s) 37, 244, 348, 897
Sau96I GGNCC 2 cut(s) 626, 729
ScaI AGTACT 1 cut(s) 786
ScrFI CCNGG 2 cut(s) 353, 927
SduI GDGCHC 1 cut(s) 515
SfaNI GCATC 3 cut(s) 71, 655, 923
SinI GGWCC 2 cut(s) 626, 729
SmiMI CAYNNNNRTG 1 cut(s) 770
Sse9I AATT 5 cut(s) 254, 310, 574, 743, 804
SsiI CCGC 6 cut(s) 47, 495, 516, 591, 722, 770
SspI AATATT 1 cut(s) 557
SspMI CTAG 3 cut(s) 368, 488, 635
StyD4I CCNGG 2 cut(s) 351, 925
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 2 cut(s) 454, 908
TaiI ACGT 2 cut(s) 297, 943
TasI AATT 5 cut(s) 254, 310, 574, 743, 804
TatI WGTACW 3 cut(s) 449, 535, 784
TauI GCSGC 2 cut(s) 50, 497
TfiI GAWTC 4 cut(s) 96, 762, 825, 995
Tru1I TTAA 6 cut(s) 6, 108, 119, 155, 701, 851
Tru9I TTAA 6 cut(s) 6, 108, 119, 155, 701, 851
TseFI GTSAC 2 cut(s) 791, 969
TseI GCWGC 2 cut(s) 491, 605
Tsp45I GTSAC 2 cut(s) 791, 969
TspDTI ATGAA 4 cut(s) 305, 669, 736, 812
TspGWI ACGGA 4 cut(s) 50, 79, 495, 565
Tth111I GACNNNGTC 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 626, 729
XapI RAATTY 2 cut(s) 254, 310
XbaI TCTAGA 2 cut(s) 367, 634
XspI CTAG 3 cut(s) 368, 488, 635
ZrmI AGTACT 1 cut(s) 786
Zsp2I ATGCAT 2 cut(s) 670, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.