MD15G1336400.v1.1

UDP-galactose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009931
Physical Location & Seq
Forward (+)
37742214 .. 37748953
6740 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1336400.v1.1.491

Sequence Viewer

Length: 999 bp
ATGGCTTCAGCAGGCAAAGCTGATCGGAAGGCTTCTCTTGATGCCGCGTCATGGTTGTTCAATGTCGTAACATCTGTTGGTATAATCATTGTCAATAAATCGTTGATGGCTACTCACGGTTTCAGTTTCGCTACAACATTAACGGGTTTGCATTTTGCCACAACAACCTTACTGACCGTTGTTCTTAAATGGCTCGGATATATCCAGCCCTCTCAGCTACCGTTACCTGATCTATTGAAATTTGTTTTATTTGCGAATTTCTCCATAGTTGGAATGAATGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGATCGCGAAGCTGACTATGATCCCAGTATCATGTTTTCTTGAAGTTGTCTTGGACAATGTGCGTTACTCAAGGGGCACAAAGCTGAGCATAACATTGGTTCTCCTGGGTGTTGCAGTTTGTACGGTTACTGATGTCAGTGTCAATGCCAAGGGCTTTATAGCTGCTTTAGTAGCAGTTTGGAGCACTGCCCTTCAACAGCATTATGTACACTCTCTTCAACGGAAGTATTCTCTTGGGTCTTTCAACTTATTGGGACATACTGCACCAGTACAGGCTGCATCTTTGCTGATATTAGGCCCCTTCTTGGACTACTGGTTGACAAATAAAACAGTTTACTCGTACGACTATCATTTGATATCTACGTCATTGATTGTCCTGTCTTGCACCATTGCGGTTGGAACCAACCTCAGCCAGTTCATCTGCATTGGTAGATTTACTGCTGTGTCATTTCAAGTCCTTGGCCATATGAAGACAATCCTGGTCTTGATCTTAGGATTCATATTCTTCGGGAAAGAGGGTCTCAATCATCAAGTAGTCATAGGTATGTTCATCGCAATATTGGGAATGATATGGTACGGCAATGCCTCGTCCAAGCCAGGAGGCAAGGAGCGTCTTCCAAGCGGCAAATCCCAAAGGAACAGTGGCTTATTATCAGAATCTTCTGATGTGGATGAGAAGGTCTAG

Protein Analysis

333

Amino Acids

36.07

Weight (kDa)

9.39

Isoelectric Point (pI)

24.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 23 - 297 2.2e-14 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39390 AT4G39390 AT4G39390
fragaria_vesca FvH4_1g23140
malus_domestica MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis pycom01g04620 pycom15g28940
rosa_chinensis RchiOBHm_Chr2g0117861
rosa_laevigata RLG00000018380
rosa_multiflora Rmu_sc0011918.1_g000001
rosa_roxburghii Rroxscaffold_2G00126160
rosa_rugosa Rorug02G0214600
rosa_samantha Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana Rw2G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 47, 320
AciI CCGC 3 cut(s) 45, 707, 936
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 1 cut(s) 775
AcsI RAATTY 2 cut(s) 239, 256
AfaI GTAC 5 cut(s) 436, 522, 585, 656, 890
AfiI CCNNNNNNNGG 2 cut(s) 51, 619
AgsI TTSAA 7 cut(s) 61, 238, 356, 509, 533, 559, 767
AjnI CCWGG 3 cut(s) 417, 792, 910
AluBI AGCT 5 cut(s) 20, 217, 325, 397, 476
AluI AGCT 5 cut(s) 20, 217, 325, 397, 476
Alw21I GWGCWC 1 cut(s) 500
Alw26I GTCTC 1 cut(s) 839
AlwI GGATC 1 cut(s) 328
AoxI GGCC 2 cut(s) 610, 775
ApeKI GCWGC 2 cut(s) 476, 590
ApoI RAATTY 2 cut(s) 239, 256
AspS9I GGNCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 392
BalI TGGCCA 1 cut(s) 777
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BbsI GAAGAC 2 cut(s) 791, 920
Bbv12I GWGCWC 1 cut(s) 500
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 2 cut(s) 463, 577
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 907
BciT130I CCWGG 3 cut(s) 419, 794, 912
BcoDI GTCTC 1 cut(s) 839
BfaI CTAG 1 cut(s) 997
BisI GCNGC 4 cut(s) 45, 477, 591, 937
BlpI GCTNAGC 1 cut(s) 398
BlsI GCNGC 4 cut(s) 46, 478, 592, 938
Bme1390I CCNGG 3 cut(s) 419, 794, 912
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 2 cut(s) 613, 715
BmrFI CCNGG 3 cut(s) 419, 794, 912
BmrI ACTGGG 1 cut(s) 332
BmsI GCATC 2 cut(s) 31, 602
BmuI ACTGGG 1 cut(s) 332
BpiI GAAGAC 2 cut(s) 791, 920
Bpu10I CCTNAGC 1 cut(s) 722
Bpu1102I GCTNAGC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 3 cut(s) 418, 462, 772
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 619
Bse1I ACTGG 4 cut(s) 338, 581, 632, 727
Bse3DI GCAATG 2 cut(s) 702, 901
BseBI CCWGG 3 cut(s) 419, 794, 912
BseDI CCNNGG 3 cut(s) 418, 462, 772
BseGI GGATG 1 cut(s) 991
BseLI CCNNNNNNNGG 2 cut(s) 51, 619
BseMI GCAATG 2 cut(s) 702, 901
BseMII CTCAG 3 cut(s) 227, 389, 736
BseNI ACTGG 4 cut(s) 338, 581, 632, 727
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 2 cut(s) 463, 577
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 2 cut(s) 47, 320
BshFI GGCC 2 cut(s) 612, 777
BsiHKAI GWGCWC 1 cut(s) 500
BsiWI CGTACG 1 cut(s) 654
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 2 cut(s) 51, 619
BsmAI GTCTC 1 cut(s) 839
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 2 cut(s) 612, 777
Bso31I GGTCTC 1 cut(s) 839
Bsp1286I GDGCHC 2 cut(s) 392, 500
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 5 cut(s) 22, 229, 315, 333, 801
Bsp1720I GCTNAGC 1 cut(s) 398
Bsp68I TCGCGA 1 cut(s) 320
BspACI CCGC 3 cut(s) 45, 707, 936
BspANI GGCC 2 cut(s) 612, 777
BspCNI CTCAG 3 cut(s) 226, 390, 735
BspFNI CGCG 2 cut(s) 47, 320
BspLI GGNNCC 2 cut(s) 613, 715
BspPI GGATC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 839
BsrDI GCAATG 2 cut(s) 702, 901
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 4 cut(s) 338, 581, 632, 727
BssECI CCNNGG 3 cut(s) 418, 462, 772
BssMI GATC 5 cut(s) 22, 229, 315, 333, 801
BssT1I CCWWGG 2 cut(s) 462, 772
Bst2UI CCWGG 3 cut(s) 419, 794, 912
Bst4CI ACNGT 6 cut(s) 119, 178, 222, 439, 646, 956
Bst6I CTCTTC 1 cut(s) 534
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 4 cut(s) 213, 398, 722, 805
BstF5I GGATG 1 cut(s) 991
BstFNI CGCG 2 cut(s) 47, 320
BstKTI GATC 5 cut(s) 25, 232, 318, 336, 804
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 5 cut(s) 22, 229, 315, 333, 801
BstMWI GCNNNNNNNGC 3 cut(s) 17, 214, 485
BstNI CCWGG 3 cut(s) 419, 794, 912
BstSCI CCNGG 3 cut(s) 417, 792, 910
BstSLI GKGCMC 1 cut(s) 392
BstUI CGCG 2 cut(s) 47, 320
BstV1I GCAGC 2 cut(s) 463, 577
BstV2I GAAGAC 2 cut(s) 791, 920
BsuRI GGCC 2 cut(s) 612, 777
BtgZI GCGATG 1 cut(s) 850
BtsCI GGATG 1 cut(s) 991
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 3 cut(s) 457, 498, 961
BtuMI TCGCGA 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 611
CseI GACGC 2 cut(s) 36, 914
Csp6I GTAC 5 cut(s) 435, 521, 584, 655, 889
CviAII CATG 2 cut(s) 51, 345
CviQI GTAC 5 cut(s) 435, 521, 584, 655, 889
DdeI CTNAG 4 cut(s) 213, 398, 722, 805
DpnI GATC 5 cut(s) 24, 231, 317, 335, 803
DpnII GATC 5 cut(s) 22, 229, 315, 333, 801
EaeI YGGCCR 1 cut(s) 775
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 2 cut(s) 462, 772
Eco31I GGTCTC 1 cut(s) 839
Eco32I GATATC 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 3 cut(s) 417, 792, 910
EcoRV GATATC 1 cut(s) 672
EcoT14I CCWWGG 2 cut(s) 462, 772
ErhI CCWWGG 2 cut(s) 462, 772
FaeI CATG 2 cut(s) 54, 348
FaqI GGGAC 1 cut(s) 582
FatI CATG 2 cut(s) 50, 344
FauNDI CATATG 1 cut(s) 780
Fnu4HI GCNGC 4 cut(s) 45, 477, 591, 937
Fsp4HI GCNGC 4 cut(s) 45, 477, 591, 937
FspBI CTAG 1 cut(s) 997
GluI GCNGC 4 cut(s) 45, 477, 591, 937
HaeIII GGCC 2 cut(s) 612, 777
HgaI GACGC 2 cut(s) 36, 914
Hin1II CATG 2 cut(s) 54, 348
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 3 cut(s) 306, 810, 971
Hpy166II GTNNAC 3 cut(s) 523, 633, 649
Hpy188I TCNGA 5 cut(s) 27, 197, 315, 970, 979
Hpy188III TCNNGA 5 cut(s) 38, 319, 353, 799, 823
Hpy8I GTNNAC 3 cut(s) 523, 633, 649
HpyAV CCTTC 4 cut(s) 22, 515, 625, 985
HpyCH4III ACNGT 6 cut(s) 119, 178, 222, 439, 646, 956
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 6 cut(s) 151, 428, 578, 593, 699, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 214, 485
HpyF3I CTNAG 4 cut(s) 213, 398, 722, 805
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 2 cut(s) 54, 348
Kzo9I GATC 5 cut(s) 22, 229, 315, 333, 801
LmnI GCTCC 2 cut(s) 495, 922
Lsp1109I GCAGC 2 cut(s) 463, 577
LweI GCATC 2 cut(s) 31, 602
MaeI CTAG 1 cut(s) 997
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 4 cut(s) 67, 222, 377, 439
MalI GATC 5 cut(s) 24, 231, 317, 335, 803
MboI GATC 5 cut(s) 22, 229, 315, 333, 801
MboII GAAGA 5 cut(s) 521, 796, 811, 920, 966
MhlI GDGCHC 2 cut(s) 392, 500
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 2 cut(s) 239, 256
MluNI TGGCCA 1 cut(s) 777
MmeI TCCRAC 2 cut(s) 250, 691
MnlI CCTC 5 cut(s) 220, 731, 823, 908, 910
Mox20I TGGCCA 1 cut(s) 777
MscI TGGCCA 1 cut(s) 777
MseI TTAA 3 cut(s) 140, 186, 287
MslI CAYNNNNRTG 1 cut(s) 857
Msp20I TGGCCA 1 cut(s) 777
MspR9I CCNGG 3 cut(s) 419, 794, 912
MvaI CCWGG 3 cut(s) 419, 794, 912
MvnI CGCG 2 cut(s) 47, 320
MwoI GCNNNNNNNGC 3 cut(s) 17, 214, 485
NdeI CATATG 1 cut(s) 780
NdeII GATC 5 cut(s) 22, 229, 315, 333, 801
NlaIII CATG 2 cut(s) 54, 348
NlaIV GGNNCC 2 cut(s) 613, 715
NruI TCGCGA 1 cut(s) 320
PfeI GAWTC 3 cut(s) 306, 810, 971
Pfl23II CGTACG 1 cut(s) 654
PkrI GCNGC 4 cut(s) 46, 478, 592, 938
Psp6I CCWGG 3 cut(s) 417, 792, 910
PspGI CCWGG 3 cut(s) 417, 792, 910
PspLI CGTACG 1 cut(s) 654
PspN4I GGNNCC 2 cut(s) 613, 715
PspPI GGNCC 1 cut(s) 611
RruI TCGCGA 1 cut(s) 320
RsaI GTAC 5 cut(s) 436, 522, 585, 656, 890
RsaNI GTAC 5 cut(s) 435, 521, 584, 655, 889
RseI CAYNNNNRTG 1 cut(s) 857
SaqAI TTAA 3 cut(s) 140, 186, 287
SatI GCNGC 4 cut(s) 45, 477, 591, 937
Sau3AI GATC 5 cut(s) 22, 229, 315, 333, 801
Sau96I GGNCC 1 cut(s) 611
ScrFI CCNGG 3 cut(s) 419, 794, 912
SduI GDGCHC 2 cut(s) 392, 500
SfaNI GCATC 2 cut(s) 31, 602
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 2 cut(s) 239, 256
SsiI CCGC 3 cut(s) 45, 707, 936
SspI AATATT 1 cut(s) 873
SspMI CTAG 1 cut(s) 997
StyD4I CCNGG 3 cut(s) 417, 792, 910
StyI CCWWGG 2 cut(s) 462, 772
TaaI ACNGT 6 cut(s) 119, 178, 222, 439, 646, 956
TaiI ACGT 1 cut(s) 680
TasI AATT 2 cut(s) 239, 256
TatI WGTACW 2 cut(s) 520, 583
TauI GCSGC 2 cut(s) 47, 939
TfiI GAWTC 3 cut(s) 306, 810, 971
Tru1I TTAA 3 cut(s) 140, 186, 287
Tru9I TTAA 3 cut(s) 140, 186, 287
TscAI CASTG 3 cut(s) 457, 505, 961
TseI GCWGC 2 cut(s) 476, 590
TspDTI ATGAA 5 cut(s) 290, 721, 797, 802, 853
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 3 cut(s) 457, 505, 961
XapI RAATTY 2 cut(s) 239, 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 953
XspI CTAG 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.