Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009931

Physical Location & Seq

Genomic Coordinates Forward (+)

17193271 .. 17198872

Gene Structure 5602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G168000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGACTTCAGCAGGCAAAGCAGATAGGAAGGCGTCTCTTGATGCTGCATCATGGTTGTTCAATGTTGTCACATCTGTTGGAATAATCATTGTCAATAAATCATTGATGGCTACTCATGGGTTCAGTTTCGCTACAACATTAACGGGTCTGCATTTTGCCACAACAACCTTACTGACAGTTATTCTCAAGTGGCTGGGATATATACAGCCCTCTCAGCTACCATTGCCTGATCTTTTGAAGTTTGTTTTATTTGCGAATTTCTCCATTGTCGGAATGAATGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGATCGCAAAGTTAACTATGATCCCAGTATCATGCTTTCTAGAAGTTGTCTTGGACAATGTTCGATACTCAAGGGGCACAAAACTAAGCATAACATTGGTTCTCCTTGGTGTTGCAGTTTGTACTGTTACTGATGTGAGTGTCAATGCCAAGGGTTTTATAGCTGCTTTAGTGGCAGTTTGGAGCACTTCCCTGCAACAGCATTATGTACACTCTCTGCAACGGAAGTATTCGCTTGGATCTTTCAACTTATTGGGACATACTGCGCCAGTACAGGCAGCATCTTTGCTGATATTGGGCCCCTTCTTGGACTACTGGTTGACAAATAAAATAGTTTATGCATATGACTATCATTTGATATCCATGTCGTTAATTGTCCTGTCTTGCACCATTGCGGTAGGGACCAACCTCAGCCAGTTCATCTGCATTGGTAGATTTACTGCTGTGTCATTTCAAGTCCTTGGCCATATGAAGACAATTCTAGTCTTGATCCTAGGGTTCATTTTCTTCGGGAAAGAGGGTCTCAATCATCAAGTAGTTATAGGTATGTTCATTGCGATATTGGGAATGATCTGGTACGGCAACGCCTCATCCAAGCCAGGGGGCAAGGAGCGTCTTCCAAGCAGCAAATCCCAAAAGAACAGTGCTTTATCAGAATCTTCTGAAGTCGATGAGAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0012505 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015931 GO:0015932 GO:0016020 GO:0022804 GO:0022857 GO:0031090 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

332

Amino Acids

36.07

Weight (kDa)

9.38

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39390 AT4G39390 AT4G39390
fragaria_vesca	FvH4_1g23140
malus_domestica	MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica	Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis	pycom01g04620 pycom15g28940
rosa_chinensis	RchiOBHm_Chr2g0117861
rosa_laevigata	RLG00000018380
rosa_multiflora	Rmu_sc0011918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126160
rosa_rugosa	Rorug02G0214600
rosa_samantha	Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana	Rw2G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	707
AclWI	GGATC	3 cut(s)	328, 559, 796
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	996
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	4 cut(s)	436, 522, 585, 890
AfiI	CCNNNNNNNGG	2 cut(s)	619, 912
AgsI	TTSAA	4 cut(s)	61, 238, 559, 767
AjnI	CCWGG	1 cut(s)	910
AluBI	AGCT	2 cut(s)	217, 476
AluI	AGCT	2 cut(s)	217, 476
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	2 cut(s)	39, 839
AlwI	GGATC	3 cut(s)	328, 559, 796
AoxI	GGCC	2 cut(s)	610, 775
ApaI	GGGCCC	1 cut(s)	614
ApeKI	GCWGC	4 cut(s)	44, 476, 590, 936
ApoI	RAATTY	1 cut(s)	256
AspA2I	CCTAGG	1 cut(s)	805
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	3 cut(s)	610, 611, 714
AvaII	GGWCC	1 cut(s)	714
AvrII	CCTAGG	1 cut(s)	805
BaeGI	GKGCMC	2 cut(s)	392, 614
BalI	TGGCCA	1 cut(s)	777
BanII	GRGCYC	1 cut(s)	614
BbsI	GAAGAC	2 cut(s)	791, 920
Bbv12I	GWGCWC	1 cut(s)	500
BbvCI	CCTCAGC	1 cut(s)	722
BbvI	GCAGC	4 cut(s)	31, 463, 602, 948
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	907
BciT130I	CCWGG	1 cut(s)	912
BcoDI	GTCTC	2 cut(s)	39, 839
BfaI	CTAG	3 cut(s)	353, 794, 806
BisI	GCNGC	4 cut(s)	45, 477, 591, 937
BlnI	CCTAGG	1 cut(s)	805
BlsI	GCNGC	4 cut(s)	46, 478, 592, 938
Bme1390I	CCNGG	1 cut(s)	912
Bme18I	GGWCC	1 cut(s)	714
BmgT120I	GGNCC	3 cut(s)	610, 611, 714
BmiI	GGNNCC	3 cut(s)	612, 613, 715
BmrFI	CCNGG	1 cut(s)	912
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	31, 56, 602
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	2 cut(s)	791, 920
Bpu10I	CCTNAGC	1 cut(s)	722
BpuEI	CTTGAG	2 cut(s)	170, 367
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	839
BsaJI	CCNNGG	5 cut(s)	418, 462, 772, 805, 911
Bsc4I	CCNNNNNNNGG	2 cut(s)	619, 912
Bse1I	ACTGG	4 cut(s)	338, 581, 632, 727
Bse3DI	GCAATG	3 cut(s)	221, 702, 864
BseBI	CCWGG	1 cut(s)	912
BseDI	CCNNGG	5 cut(s)	418, 462, 772, 805, 911
BseGI	GGATG	1 cut(s)	902
BseLI	CCNNNNNNNGG	2 cut(s)	619, 912
BseMI	GCAATG	3 cut(s)	221, 702, 864
BseMII	CTCAG	2 cut(s)	227, 736
BseNI	ACTGG	4 cut(s)	338, 581, 632, 727
BseSI	GKGCMC	2 cut(s)	392, 614
BseXI	GCAGC	4 cut(s)	31, 463, 602, 948
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	2 cut(s)	612, 777
BsiHKAI	GWGCWC	1 cut(s)	500
BslFI	GGGAC	2 cut(s)	582, 727
BslI	CCNNNNNNNGG	2 cut(s)	619, 912
BsmAI	GTCTC	2 cut(s)	39, 839
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	582, 727
BsnI	GGCC	2 cut(s)	612, 777
Bso31I	GGTCTC	1 cut(s)	839
Bsp120I	GGGCCC	1 cut(s)	610
Bsp1286I	GDGCHC	3 cut(s)	392, 500, 614
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	6 cut(s)	229, 315, 333, 551, 801, 882
BspACI	CCGC	1 cut(s)	707
BspANI	GGCC	2 cut(s)	612, 777
BspCNI	CTCAG	2 cut(s)	226, 735
BspLI	GGNNCC	3 cut(s)	612, 613, 715
BspPI	GGATC	3 cut(s)	328, 559, 796
BspTNI	GGTCTC	1 cut(s)	839
BsrDI	GCAATG	3 cut(s)	221, 702, 864
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	4 cut(s)	338, 581, 632, 727
BssECI	CCNNGG	5 cut(s)	418, 462, 772, 805, 911
BssMI	GATC	6 cut(s)	229, 315, 333, 551, 801, 882
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	4 cut(s)	418, 462, 772, 805
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	3 cut(s)	178, 439, 956
BstACI	GRCGYC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	213, 398, 722
BstF5I	GGATG	1 cut(s)	902
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	6 cut(s)	232, 318, 336, 554, 804, 885
BstMAI	GTCTC	2 cut(s)	39, 839
BstMBI	GATC	6 cut(s)	229, 315, 333, 551, 801, 882
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 214, 223, 485
BstNI	CCWGG	1 cut(s)	912
BstSCI	CCNGG	1 cut(s)	910
BstSLI	GKGCMC	2 cut(s)	392, 614
BstV1I	GCAGC	4 cut(s)	31, 463, 602, 948
BstV2I	GAAGAC	2 cut(s)	791, 920
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	612, 777
BtsCI	GGATG	1 cut(s)	902
BtsIMutI	CAGTG	1 cut(s)	961
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	3 cut(s)	610, 611, 714
CseI	GACGC	2 cut(s)	21, 914
Csp6I	GTAC	4 cut(s)	435, 521, 584, 889
CviAII	CATG	4 cut(s)	51, 116, 345, 676
CviJI	RGCY	9 cut(s)	110, 193, 208, 217, 476, 612, 726, 777, 910
CviKI_1	RGCY	9 cut(s)	110, 193, 208, 217, 476, 612, 726, 777, 910
CviQI	GTAC	4 cut(s)	435, 521, 584, 889
DdeI	CTNAG	3 cut(s)	213, 398, 722
DpnI	GATC	6 cut(s)	231, 317, 335, 553, 803, 884
DpnII	GATC	6 cut(s)	229, 315, 333, 551, 801, 882
EaeI	YGGCCR	1 cut(s)	775
Eco130I	CCWWGG	4 cut(s)	418, 462, 772, 805
Eco24I	GRGCYC	1 cut(s)	614
Eco31I	GGTCTC	1 cut(s)	839
Eco32I	GATATC	1 cut(s)	672
Eco47I	GGWCC	1 cut(s)	714
Eco57I	CTGAAG	1 cut(s)	996
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	910
EcoRV	GATATC	1 cut(s)	672
EcoT14I	CCWWGG	4 cut(s)	418, 462, 772, 805
EcoT22I	ATGCAT	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	614
ErhI	CCWWGG	4 cut(s)	418, 462, 772, 805
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	4 cut(s)	54, 119, 348, 679
FaqI	GGGAC	2 cut(s)	582, 727
FatI	CATG	4 cut(s)	50, 115, 344, 675
FauNDI	CATATG	2 cut(s)	655, 780
Fnu4HI	GCNGC	4 cut(s)	45, 477, 591, 937
FokI	GGATG	1 cut(s)	889
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	4 cut(s)	45, 477, 591, 937
FspBI	CTAG	3 cut(s)	353, 794, 806
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	4 cut(s)	45, 477, 591, 937
GsaI	CCCAGC	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	612, 777
HgaI	GACGC	2 cut(s)	21, 914
HhaI	GCGC	1 cut(s)	580
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	54, 119, 348, 679
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	2 cut(s)	327, 633
HindII	GTYRAC	2 cut(s)	327, 633
HinfI	GANTC	2 cut(s)	306, 968
HpaI	GTTAAC	1 cut(s)	327
Hpy166II	GTNNAC	3 cut(s)	327, 523, 633
Hpy188I	TCNGA	4 cut(s)	272, 315, 967, 976
Hpy188III	TCNNGA	4 cut(s)	38, 353, 799, 823
Hpy8I	GTNNAC	3 cut(s)	327, 523, 633
HpyAV	CCTTC	3 cut(s)	22, 625, 982
HpyCH4III	ACNGT	3 cut(s)	178, 439, 956
HpyCH4V	TGCA	8 cut(s)	47, 151, 428, 508, 532, 653, 699, 738
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 214, 223, 485
HpyF3I	CTNAG	3 cut(s)	213, 398, 722
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	54, 119, 348, 679
HspAI	GCGC	1 cut(s)	578
KspAI	GTTAAC	1 cut(s)	327
Kzo9I	GATC	6 cut(s)	229, 315, 333, 551, 801, 882
LmnI	GCTCC	2 cut(s)	495, 922
Lsp1109I	GCAGC	4 cut(s)	31, 463, 602, 948
LweI	GCATC	3 cut(s)	31, 56, 602
MaeI	CTAG	3 cut(s)	353, 794, 806
MaeIII	GTNAC	2 cut(s)	67, 439
MalI	GATC	6 cut(s)	231, 317, 335, 553, 803, 884
MboI	GATC	6 cut(s)	229, 315, 333, 551, 801, 882
MboII	GAAGA	4 cut(s)	796, 811, 920, 963
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	3 cut(s)	392, 500, 614
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	3 cut(s)	256, 684, 789
MluNI	TGGCCA	1 cut(s)	777
MmeI	TCCRAC	2 cut(s)	58, 250
MnlI	CCTC	4 cut(s)	220, 731, 823, 910
Mox20I	TGGCCA	1 cut(s)	777
Mph1103I	ATGCAT	1 cut(s)	655
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	4 cut(s)	140, 287, 326, 683
Msp20I	TGGCCA	1 cut(s)	777
MspR9I	CCNGG	1 cut(s)	912
MvaI	CCWGG	1 cut(s)	912
MwoI	GCNNNNNNNGC	4 cut(s)	17, 214, 223, 485
NdeI	CATATG	2 cut(s)	655, 780
NdeII	GATC	6 cut(s)	229, 315, 333, 551, 801, 882
NlaIII	CATG	4 cut(s)	54, 119, 348, 679
NlaIV	GGNNCC	3 cut(s)	612, 613, 715
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	655
PfeI	GAWTC	2 cut(s)	306, 968
PkrI	GCNGC	4 cut(s)	46, 478, 592, 938
Psp6I	CCWGG	1 cut(s)	910
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	3 cut(s)	612, 613, 715
PspOMI	GGGCCC	1 cut(s)	610
PspPI	GGNCC	3 cut(s)	610, 611, 714
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	4 cut(s)	436, 522, 585, 890
RsaNI	GTAC	4 cut(s)	435, 521, 584, 889
SaqAI	TTAA	4 cut(s)	140, 287, 326, 683
SatI	GCNGC	4 cut(s)	45, 477, 591, 937
Sau3AI	GATC	6 cut(s)	229, 315, 333, 551, 801, 882
Sau96I	GGNCC	3 cut(s)	610, 611, 714
ScrFI	CCNGG	1 cut(s)	912
SduI	GDGCHC	3 cut(s)	392, 500, 614
SetI	ASST	6 cut(s)	170, 219, 478, 723, 859, 993
SfaNI	GCATC	3 cut(s)	31, 56, 602
SinI	GGWCC	1 cut(s)	714
SmlI	CTYRAG	2 cut(s)	185, 382
SmoI	CTYRAG	2 cut(s)	185, 382
Sse9I	AATT	3 cut(s)	256, 684, 789
SsiI	CCGC	1 cut(s)	707
SspMI	CTAG	3 cut(s)	353, 794, 806
StyD4I	CCNGG	1 cut(s)	910
StyI	CCWWGG	4 cut(s)	418, 462, 772, 805
TaaI	ACNGT	3 cut(s)	178, 439, 956
TaqI	TCGA	2 cut(s)	376, 981
TasI	AATT	3 cut(s)	256, 684, 789
TatI	WGTACW	3 cut(s)	434, 520, 583
TfiI	GAWTC	2 cut(s)	306, 968
Tru1I	TTAA	4 cut(s)	140, 287, 326, 683
Tru9I	TTAA	4 cut(s)	140, 287, 326, 683
TscAI	CASTG	1 cut(s)	961
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	4 cut(s)	44, 476, 590, 936
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	5 cut(s)	290, 721, 797, 802, 853
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	1 cut(s)	961
VpaK11BI	GGWCC	1 cut(s)	714
XapI	RAATTY	1 cut(s)	256
XbaI	TCTAGA	1 cut(s)	352
XmaJI	CCTAGG	1 cut(s)	805
XspI	CTAG	3 cut(s)	353, 794, 806
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.