Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009931

Physical Location & Seq

Genomic Coordinates Reverse (-)

3593901 .. 3596275

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTTCAGCAGGCAAAGCTGATCGGAAGGCTTCTCTTGATGCTGCCTCATGGTTGTTCAATGTTGTCACATCTGTTGGAATAATCATTGTCAATAAATCGTTGATGGCTACGCACGGTTTCAGTTTTGCTACAACATTAACGGGTCTGCATTTTGCCACAACAACCTTACTGACTGTTGTTCTTAAATGGCTGGGATATATCCAGCCCTCTCAGCTACCATTATCTGATCTTTTGAAGTTTGTTTTATTTGCGAATTTCTCCATAGTCGGCATGAATGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGATTGCGAAGCTGACTATGATACCAGTATCATGTTTTCTAGAAGTTGTCTTGGACAACGTGCGTTACTCAAGGGGCACAAAGCTAAGCATAGCACTGGTTCTCCTTGGAGTTGCAGTTTGTACTGTTACTGATGTCAGTGTCAATGCCAAGGGTTTTCTAGCTGCTTTAGTGGCAGTTTGGAGCACTGCCCTACAACAGCATTATGTACACTCTCTTCAACGGAAGTATTCTCTTGGATCTTTCAATTTATTGGGACATACTGCGCCAGTACAGGCTGCATCTTTGCTGATATTAGGCCCCTTCTTGGACTACTGGTTGACAAATAAAATAGTTTACGCGTACGACTATCATTTGATATCCATGAGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0012505 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015931 GO:0015932 GO:0016020 GO:0022804 GO:0022857 GO:0031090 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

229

Amino Acids

25.01

Weight (kDa)

9.46

Isoelectric Point (pI)

23.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39390 AT4G39390 AT4G39390
fragaria_vesca	FvH4_1g23140
malus_domestica	MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica	Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis	pycom01g04620 pycom15g28940
rosa_chinensis	RchiOBHm_Chr2g0117861
rosa_laevigata	RLG00000018380
rosa_multiflora	Rmu_sc0011918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126160
rosa_rugosa	Rorug02G0214600
rosa_samantha	Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana	Rw2G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	653
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	256
AfaI	GTAC	4 cut(s)	436, 522, 585, 656
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	4 cut(s)	61, 238, 533, 559
AluBI	AGCT	5 cut(s)	20, 217, 325, 397, 476
AluI	AGCT	5 cut(s)	20, 217, 325, 397, 476
Alw21I	GWGCWC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	3 cut(s)	44, 476, 590
ApoI	RAATTY	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	392
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	3 cut(s)	31, 463, 577
BccI	CCATC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	353, 473
BisI	GCNGC	3 cut(s)	45, 477, 591
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	3 cut(s)	46, 478, 592
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	1 cut(s)	613
BmsI	GCATC	2 cut(s)	31, 602
Bpu1102I	GCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	418, 462
BsaXI	ACNNNNNCTCC	4 cut(s)	399, 414, 429, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	4 cut(s)	338, 414, 581, 632
BseDI	CCNNGG	2 cut(s)	418, 462
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	4 cut(s)	338, 414, 581, 632
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	31, 463, 577
BseYI	CCCAGC	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	653
BshFI	GGCC	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	500
BsiWI	CGTACG	1 cut(s)	654
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	392, 500
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	3 cut(s)	22, 229, 551
Bsp1720I	GCTNAGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	653
BspLI	GGNNCC	1 cut(s)	613
BspPI	GGATC	1 cut(s)	559
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	4 cut(s)	338, 414, 581, 632
BssECI	CCNNGG	2 cut(s)	418, 462
BssMI	GATC	3 cut(s)	22, 229, 551
BssT1I	CCWWGG	2 cut(s)	418, 462
Bst4CI	ACNGT	3 cut(s)	119, 178, 439
Bst6I	CTCTTC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	213, 398
BstFNI	CGCG	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	3 cut(s)	25, 232, 554
BstMBI	GATC	3 cut(s)	22, 229, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 214, 485
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	653
BstV1I	GCAGC	3 cut(s)	31, 463, 577
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	612
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	407, 457, 498
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	611
Csp6I	GTAC	4 cut(s)	435, 521, 584, 655
CviAII	CATG	4 cut(s)	51, 274, 345, 676
CviQI	GTAC	4 cut(s)	435, 521, 584, 655
DdeI	CTNAG	2 cut(s)	213, 398
DpnI	GATC	3 cut(s)	24, 231, 553
DpnII	GATC	3 cut(s)	22, 229, 551
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	418, 462
Eco32I	GATATC	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRV	GATATC	1 cut(s)	672
EcoT14I	CCWWGG	2 cut(s)	418, 462
ErhI	CCWWGG	2 cut(s)	418, 462
FaeI	CATG	4 cut(s)	54, 277, 348, 679
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	4 cut(s)	50, 273, 344, 675
Fnu4HI	GCNGC	3 cut(s)	45, 477, 591
Fsp4HI	GCNGC	3 cut(s)	45, 477, 591
FspBI	CTAG	2 cut(s)	353, 473
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	3 cut(s)	45, 477, 591
GsaI	CCCAGC	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	612
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	4 cut(s)	54, 277, 348, 679
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HinfI	GANTC	1 cut(s)	306
Hpy166II	GTNNAC	3 cut(s)	523, 633, 649
Hpy188I	TCNGA	3 cut(s)	27, 229, 315
Hpy188III	TCNNGA	2 cut(s)	38, 353
Hpy8I	GTNNAC	3 cut(s)	523, 633, 649
HpyAV	CCTTC	2 cut(s)	22, 625
HpyCH4III	ACNGT	3 cut(s)	119, 178, 439
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	3 cut(s)	151, 428, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 214, 485
HpyF3I	CTNAG	2 cut(s)	213, 398
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	54, 277, 348, 679
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	3 cut(s)	22, 229, 551
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	7 cut(s)	179, 218, 351, 395, 572, 594, 613
Lsp1109I	GCAGC	3 cut(s)	31, 463, 577
LweI	GCATC	2 cut(s)	31, 602
MaeI	CTAG	2 cut(s)	353, 473
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	67, 377, 439
MalI	GATC	3 cut(s)	24, 231, 553
MboI	GATC	3 cut(s)	22, 229, 551
MboII	GAAGA	1 cut(s)	521
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	392, 500
MluCI	AATT	2 cut(s)	256, 559
MluI	ACGCGT	1 cut(s)	651
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	2 cut(s)	58, 220
MseI	TTAA	3 cut(s)	140, 186, 287
MslI	CAYNNNNRTG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	653
MwoI	GCNNNNNNNGC	3 cut(s)	17, 214, 485
NdeII	GATC	3 cut(s)	22, 229, 551
NlaIII	CATG	4 cut(s)	54, 277, 348, 679
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	306
Pfl23II	CGTACG	1 cut(s)	654
PkrI	GCNGC	3 cut(s)	46, 478, 592
PspFI	CCCAGC	1 cut(s)	193
PspLI	CGTACG	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	4 cut(s)	436, 522, 585, 656
RsaNI	GTAC	4 cut(s)	435, 521, 584, 655
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	140, 186, 287
SatI	GCNGC	3 cut(s)	45, 477, 591
Sau3AI	GATC	3 cut(s)	22, 229, 551
Sau96I	GGNCC	1 cut(s)	611
SduI	GDGCHC	2 cut(s)	392, 500
SetI	ASST	7 cut(s)	22, 170, 219, 327, 375, 399, 478
SfaNI	GCATC	2 cut(s)	31, 602
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	2 cut(s)	256, 559
SspMI	CTAG	2 cut(s)	353, 473
StyI	CCWWGG	2 cut(s)	418, 462
TaaI	ACNGT	3 cut(s)	119, 178, 439
TaiI	ACGT	1 cut(s)	375
TasI	AATT	2 cut(s)	256, 559
TatI	WGTACW	3 cut(s)	434, 520, 583
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	3 cut(s)	140, 186, 287
Tru9I	TTAA	3 cut(s)	140, 186, 287
TscAI	CASTG	3 cut(s)	414, 457, 505
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	3 cut(s)	44, 476, 590
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	3 cut(s)	414, 457, 505
XapI	RAATTY	1 cut(s)	256
XbaI	TCTAGA	1 cut(s)	352
XspI	CTAG	2 cut(s)	353, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.