MD01G1014300.v1.1

UDP-galactose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0009931
Physical Location & Seq
Reverse (-)
6706522 .. 6711092
4571 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1014300.v1.1.491

Sequence Viewer

Length: 999 bp
ATGGCTTCAGCAGGCAAAGCTGATCGGAAGGCTTCTCTTGATGCTGCCTCATGGTTGTTCAATGTTGTCACATCTGTTGGAATAATAATTGTCAATAAATCGTTGATGGCTAAGCACGGTTTCAGTTTTGCTACAACATTAACGGGTCTGCATTTTGCCACAACAACCTTACTGACCGTTGTTCTTAAATGGCTGGGATATATCCAGCCCTCTCAGCTACCATTACGTGATCTTTTGAAGTTTGTTTTATTTGCGAATTTCTCCATAGTCGGCATGAATGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGATCGCGAAGCTGACTATGATACCAGTATCTTGTTTTCTAGAAGTTGTCTTGGACAATGTGCGTTACTCAAGGGGCACAAAGCTAAGCATAACACTGGTTCTCCTTGGAGTTGCAGTTTGTACTGTTACTGATGTCAGTGTCAATGCCAAGGGTTTTATAGCTGCTTTAGTGGCAGTTTGGAGTACTGCCCTACAACAGCATTATGTACACTCTCTTCAACGGAAGTATTCTCTTGGATCTTTCAATTTATTGGGACATACTGCGCCAGTACAGGCTGCATCATTGCTGATATTAGGCCCCTTCTTGGACTACTGGTTGACAAATAAAATAGTTTACGCGTACGACTATCATTTGATATCCTTGTCATTAATTGTCCTGTCTTGCACCATCGCGGTTGGGACCAACCTCAGCCAGTTCATCTGCATTGGTAGATTTACTGCTGTGTCATTTCAAGTCCTTGGCCATATGAAGACAATCCTGGTCTTGATCTTAGGGTTCATATTCTTCGGGAAGGAGGGTCTCAATCTTCAAGTAGTCCTAGGTATGTTCATCGCGATATTGGGAATGATCTGGTACGGCAATGCCTCATCCAAGCCAGGAGGCAAGGAGCGTCTTCCAAGCAGCAAATCGCAAAAGAACAGTGGCTTATTATCAGAATCTTCTGGCGTGGATGAGAAGGTCTAG

Protein Analysis

333

Amino Acids

36.09

Weight (kDa)

9.59

Isoelectric Point (pI)

26.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 23 - 297 6.5e-14 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39390 AT4G39390 AT4G39390
fragaria_vesca FvH4_1g23140
malus_domestica MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis pycom01g04620 pycom15g28940
rosa_chinensis RchiOBHm_Chr2g0117861
rosa_laevigata RLG00000018380
rosa_multiflora Rmu_sc0011918.1_g000001
rosa_roxburghii Rroxscaffold_2G00126160
rosa_rugosa Rorug02G0214600
rosa_samantha Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana Rw2G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 320, 653, 707, 869
AciI CCGC 1 cut(s) 707
AclWI GGATC 1 cut(s) 559
AcoI YGGCCR 1 cut(s) 775
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 6 cut(s) 436, 499, 522, 585, 656, 890
AfiI CCNNNNNNNGG 1 cut(s) 619
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 6 cut(s) 61, 238, 533, 559, 767, 845
AjnI CCWGG 2 cut(s) 792, 910
AluBI AGCT 5 cut(s) 20, 217, 325, 397, 476
AluI AGCT 5 cut(s) 20, 217, 325, 397, 476
Alw26I GTCTC 1 cut(s) 839
AlwI GGATC 1 cut(s) 559
AoxI GGCC 2 cut(s) 610, 775
ApeKI GCWGC 4 cut(s) 44, 476, 590, 936
ApoI RAATTY 1 cut(s) 256
AseI ATTAAT 1 cut(s) 683
AspA2I CCTAGG 1 cut(s) 853
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 2 cut(s) 611, 714
AvaII GGWCC 1 cut(s) 714
AvrII CCTAGG 1 cut(s) 853
BaeGI GKGCMC 1 cut(s) 392
BalI TGGCCA 1 cut(s) 777
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BbsI GAAGAC 2 cut(s) 791, 920
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 4 cut(s) 31, 463, 577, 948
BccI CCATC 2 cut(s) 100, 710
BceAI ACGGC 1 cut(s) 907
BciT130I CCWGG 2 cut(s) 794, 912
BcoDI GTCTC 1 cut(s) 839
BfaI CTAG 3 cut(s) 353, 854, 997
BisI GCNGC 4 cut(s) 45, 477, 591, 937
BlnI CCTAGG 1 cut(s) 853
BlpI GCTNAGC 2 cut(s) 111, 398
BlsI GCNGC 4 cut(s) 46, 478, 592, 938
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 2 cut(s) 794, 912
Bme18I GGWCC 1 cut(s) 714
BmgT120I GGNCC 2 cut(s) 611, 714
BmiI GGNNCC 2 cut(s) 613, 715
BmrFI CCNGG 2 cut(s) 794, 912
BmsI GCATC 2 cut(s) 31, 602
BpiI GAAGAC 2 cut(s) 791, 920
Bpu10I CCTNAGC 1 cut(s) 722
Bpu1102I GCTNAGC 2 cut(s) 111, 398
BpuEI CTTGAG 1 cut(s) 367
BsaAI YACGTR 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 4 cut(s) 418, 462, 772, 853
BsaXI ACNNNNNCTCC 4 cut(s) 399, 414, 429, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse1I ACTGG 5 cut(s) 338, 414, 581, 632, 727
Bse3DI GCAATG 2 cut(s) 596, 901
BseBI CCWGG 2 cut(s) 794, 912
BseDI CCNNGG 4 cut(s) 418, 462, 772, 853
BseGI GGATG 2 cut(s) 902, 991
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMI GCAATG 2 cut(s) 596, 901
BseMII CTCAG 2 cut(s) 227, 736
BseNI ACTGG 5 cut(s) 338, 414, 581, 632, 727
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 4 cut(s) 31, 463, 577, 948
BseYI CCCAGC 1 cut(s) 193
Bsh1236I CGCG 4 cut(s) 320, 653, 707, 869
BshFI GGCC 2 cut(s) 612, 777
BsiWI CGTACG 1 cut(s) 654
BslFI GGGAC 2 cut(s) 582, 727
BslI CCNNNNNNNGG 1 cut(s) 619
BsmAI GTCTC 1 cut(s) 839
BsmFI GGGAC 2 cut(s) 582, 727
BsnI GGCC 2 cut(s) 612, 777
Bso31I GGTCTC 1 cut(s) 839
Bsp1286I GDGCHC 1 cut(s) 392
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 6 cut(s) 22, 229, 315, 551, 801, 882
Bsp1720I GCTNAGC 2 cut(s) 111, 398
Bsp68I TCGCGA 2 cut(s) 320, 869
BspACI CCGC 1 cut(s) 707
BspANI GGCC 2 cut(s) 612, 777
BspCNI CTCAG 2 cut(s) 226, 735
BspFNI CGCG 4 cut(s) 320, 653, 707, 869
BspLI GGNNCC 2 cut(s) 613, 715
BspPI GGATC 1 cut(s) 559
BspTNI GGTCTC 1 cut(s) 839
BsrDI GCAATG 2 cut(s) 596, 901
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 5 cut(s) 338, 414, 581, 632, 727
BssECI CCNNGG 4 cut(s) 418, 462, 772, 853
BssMI GATC 6 cut(s) 22, 229, 315, 551, 801, 882
BssT1I CCWWGG 4 cut(s) 418, 462, 772, 853
Bst2UI CCWGG 2 cut(s) 794, 912
Bst4CI ACNGT 4 cut(s) 119, 178, 439, 956
Bst6I CTCTTC 1 cut(s) 534
BstAUI TGTACA 1 cut(s) 520
BstBAI YACGTR 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 5 cut(s) 111, 213, 398, 722, 805
BstF5I GGATG 2 cut(s) 902, 991
BstFNI CGCG 4 cut(s) 320, 653, 707, 869
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 6 cut(s) 25, 232, 318, 554, 804, 885
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 6 cut(s) 22, 229, 315, 551, 801, 882
BstMWI GCNNNNNNNGC 3 cut(s) 17, 214, 485
BstNI CCWGG 2 cut(s) 794, 912
BstSCI CCNGG 2 cut(s) 792, 910
BstSLI GKGCMC 1 cut(s) 392
BstUI CGCG 4 cut(s) 320, 653, 707, 869
BstV1I GCAGC 4 cut(s) 31, 463, 577, 948
BstV2I GAAGAC 2 cut(s) 791, 920
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 2 cut(s) 612, 777
BtgZI GCGATG 2 cut(s) 688, 850
BtsCI GGATG 2 cut(s) 902, 991
BtsIMutI CAGTG 3 cut(s) 407, 457, 961
BtuMI TCGCGA 2 cut(s) 320, 869
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 2 cut(s) 611, 714
CseI GACGC 1 cut(s) 914
Csp6I GTAC 6 cut(s) 435, 498, 521, 584, 655, 889
CviAII CATG 2 cut(s) 51, 274
CviQI GTAC 6 cut(s) 435, 498, 521, 584, 655, 889
DdeI CTNAG 5 cut(s) 111, 213, 398, 722, 805
DpnI GATC 6 cut(s) 24, 231, 317, 553, 803, 884
DpnII GATC 6 cut(s) 22, 229, 315, 551, 801, 882
EaeI YGGCCR 1 cut(s) 775
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 4 cut(s) 418, 462, 772, 853
Eco31I GGTCTC 1 cut(s) 839
Eco32I GATATC 1 cut(s) 672
Eco47I GGWCC 1 cut(s) 714
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 792, 910
EcoRV GATATC 1 cut(s) 672
EcoT14I CCWWGG 4 cut(s) 418, 462, 772, 853
ErhI CCWWGG 4 cut(s) 418, 462, 772, 853
FaeI CATG 2 cut(s) 54, 277
FaqI GGGAC 2 cut(s) 582, 727
FatI CATG 2 cut(s) 50, 273
FauNDI CATATG 1 cut(s) 780
Fnu4HI GCNGC 4 cut(s) 45, 477, 591, 937
FokI GGATG 1 cut(s) 889
Fsp4HI GCNGC 4 cut(s) 45, 477, 591, 937
FspBI CTAG 3 cut(s) 353, 854, 997
GlaI GCGC 1 cut(s) 579
GluI GCNGC 4 cut(s) 45, 477, 591, 937
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 612, 777
HgaI GACGC 1 cut(s) 914
HhaI GCGC 1 cut(s) 580
Hin1II CATG 2 cut(s) 54, 277
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 2 cut(s) 306, 971
Hpy166II GTNNAC 3 cut(s) 523, 633, 649
Hpy188I TCNGA 3 cut(s) 27, 315, 970
Hpy188III TCNNGA 6 cut(s) 38, 319, 353, 799, 823, 868
Hpy8I GTNNAC 3 cut(s) 523, 633, 649
HpyAV CCTTC 4 cut(s) 22, 625, 820, 985
HpyCH4III ACNGT 4 cut(s) 119, 178, 439, 956
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 5 cut(s) 151, 428, 593, 699, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 214, 485
HpyF3I CTNAG 5 cut(s) 111, 213, 398, 722, 805
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 2 cut(s) 54, 277
HspAI GCGC 1 cut(s) 578
Kzo9I GATC 6 cut(s) 22, 229, 315, 551, 801, 882
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 4 cut(s) 31, 463, 577, 948
LweI GCATC 2 cut(s) 31, 602
MaeI CTAG 3 cut(s) 353, 854, 997
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 3 cut(s) 67, 377, 439
MalI GATC 6 cut(s) 24, 231, 317, 553, 803, 884
MboI GATC 6 cut(s) 22, 229, 315, 551, 801, 882
MboII GAAGA 6 cut(s) 521, 796, 811, 833, 920, 966
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 392
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 4 cut(s) 87, 256, 559, 684
MluI ACGCGT 1 cut(s) 651
MluNI TGGCCA 1 cut(s) 777
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 6 cut(s) 58, 220, 731, 823, 908, 910
Mox20I TGGCCA 1 cut(s) 777
MscI TGGCCA 1 cut(s) 777
MseI TTAA 4 cut(s) 140, 186, 287, 683
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 777
MspR9I CCNGG 2 cut(s) 794, 912
MvaI CCWGG 2 cut(s) 794, 912
MvnI CGCG 4 cut(s) 320, 653, 707, 869
MwoI GCNNNNNNNGC 3 cut(s) 17, 214, 485
NdeI CATATG 1 cut(s) 780
NdeII GATC 6 cut(s) 22, 229, 315, 551, 801, 882
NlaIII CATG 2 cut(s) 54, 277
NlaIV GGNNCC 2 cut(s) 613, 715
NmuCI GTSAC 1 cut(s) 67
NruI TCGCGA 2 cut(s) 320, 869
PfeI GAWTC 2 cut(s) 306, 971
Pfl23II CGTACG 1 cut(s) 654
PkrI GCNGC 4 cut(s) 46, 478, 592, 938
Ppu21I YACGTR 1 cut(s) 227
PshBI ATTAAT 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 792, 910
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 792, 910
PspLI CGTACG 1 cut(s) 654
PspN4I GGNNCC 2 cut(s) 613, 715
PspPI GGNCC 2 cut(s) 611, 714
PsuI RGATCY 1 cut(s) 551
RruI TCGCGA 2 cut(s) 320, 869
RsaI GTAC 6 cut(s) 436, 499, 522, 585, 656, 890
RsaNI GTAC 6 cut(s) 435, 498, 521, 584, 655, 889
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 4 cut(s) 140, 186, 287, 683
SatI GCNGC 4 cut(s) 45, 477, 591, 937
Sau3AI GATC 6 cut(s) 22, 229, 315, 551, 801, 882
Sau96I GGNCC 2 cut(s) 611, 714
ScaI AGTACT 1 cut(s) 499
ScrFI CCNGG 2 cut(s) 794, 912
SduI GDGCHC 1 cut(s) 392
SfaNI GCATC 2 cut(s) 31, 602
SinI GGWCC 1 cut(s) 714
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 4 cut(s) 87, 256, 559, 684
SsiI CCGC 1 cut(s) 707
SspMI CTAG 3 cut(s) 353, 854, 997
StyD4I CCNGG 2 cut(s) 792, 910
StyI CCWWGG 4 cut(s) 418, 462, 772, 853
TaaI ACNGT 4 cut(s) 119, 178, 439, 956
TaiI ACGT 1 cut(s) 229
TasI AATT 4 cut(s) 87, 256, 559, 684
TatI WGTACW 4 cut(s) 434, 497, 520, 583
TfiI GAWTC 2 cut(s) 306, 971
Tru1I TTAA 4 cut(s) 140, 186, 287, 683
Tru9I TTAA 4 cut(s) 140, 186, 287, 683
TscAI CASTG 3 cut(s) 414, 457, 961
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 4 cut(s) 44, 476, 590, 936
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 5 cut(s) 290, 721, 797, 802, 853
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 3 cut(s) 414, 457, 961
VpaK11BI GGWCC 1 cut(s) 714
VspI ATTAAT 1 cut(s) 683
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 352
XmaJI CCTAGG 1 cut(s) 853
XspI CTAG 3 cut(s) 353, 854, 997
ZrmI AGTACT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.