Rh2AG270800

UDP-galactose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0009931
Physical Location & Seq
Reverse (-)
32247640 .. 32252735
5096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG270800.1

Sequence Viewer

Length: 999 bp
ATGAGTGCCGCCGGCAAAGGTGATAGGAAGGCGACTCTTGACGCCGCCTCATGGCTGTTCAATGTGGTTACATCTGTTGGAATAATCATTGTCAATAAATCATTGATGGCTACGCATGGTTTCAGTTTCGCCACAACGTTAACGGGTCTGCATTTTGCCACAACAACCTTATTGACACTTGTCCTTAAGTGGCTGGGATACATCCAGCCTTCCCAGTTACCACTGCCTGAGCTTTTGAAGTTTGTTTTATTTGCAAATTTCTCCATAGTTGGGATGAATGTGAGCTTAATGTGGAACTCTGTTGGATTCTATCAGATCGCGAAGCTGACTATGATCCCAGTATCATGTTTTCTAGAGGTTGTCTTGGACAAGGTCCGATACTCAAGGGATACGAAGCTTAGCATAACATTGGTTCTCCTTGGTGTCGCAGTTTGTACTGTTACTGATGTGAGTGTTAATGCCAAGGGTTTTATAGCTGCTTTAGTGGCAGTTTGGAGCACTGCCCTACAACAGTATTACGTGCACCATCTTCAACGGAAGTATTCTCTTAGTTCTTTCAACCTATTGGGACATACTGCACCAGTACAGGCTGCATCTTTGCTGATATTAGGTCCCTTCGTGGACTTCTGGTTGACAAGCAAAACAGTTTATGCATATGACTATCATTTTGTATCAGTGTCATTGATTCTCCTATCTTGCACCATTGCGGTAGGAACCAACCTCAGCCAGTTCATATGCATCGGCAGATTTACTGCTGTGTCATTTCAAGTCCTGGGCCATATGAAGACGATTCTAGTCTTGATCTTAGGATTCATATTCTTTGGGAAAGAGGGTCTCAATCATCAAGTAATTTTAGGTATGTTCATTGCAATCATGGGAATGATATGGTATGGCAATGCCTCATCCAAACCAGGAGGCAAGGAGCGTCGTTCCGCTCCAAGCAAATCCCAGAAGAAAGGCACTGTATCAGAGTCCTCTGAAGTGGATGACAAGGTATAG

Protein Analysis

332

Amino Acids

36.29

Weight (kDa)

9.5

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 23 - 297 6.8e-16 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39390 AT4G39390 AT4G39390
fragaria_vesca FvH4_1g23140
malus_domestica MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis pycom01g04620 pycom15g28940
rosa_chinensis RchiOBHm_Chr2g0117861
rosa_laevigata RLG00000018380
rosa_multiflora Rmu_sc0011918.1_g000001
rosa_roxburghii Rroxscaffold_2G00126160
rosa_rugosa Rorug02G0214600
rosa_samantha Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana Rw2G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 935
AccII CGCG 1 cut(s) 320
AciI CCGC 4 cut(s) 9, 45, 707, 933
AclI AACGTT 1 cut(s) 137
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 999
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 436, 585
AfiI CCNNNNNNNGG 2 cut(s) 51, 270
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 5 cut(s) 61, 238, 533, 559, 767
AjnI CCWGG 2 cut(s) 771, 910
AluBI AGCT 5 cut(s) 232, 285, 325, 397, 476
AluI AGCT 5 cut(s) 232, 285, 325, 397, 476
Alw21I GWGCWC 2 cut(s) 500, 525
Alw26I GTCTC 1 cut(s) 839
Alw44I GTGCAC 1 cut(s) 521
AlwI GGATC 1 cut(s) 328
AoxI GGCC 1 cut(s) 775
ApaLI GTGCAC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 476, 590
ApoI RAATTY 1 cut(s) 256
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AspS9I GGNCC 3 cut(s) 373, 611, 775
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 2 cut(s) 373, 611
BaeGI GKGCMC 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 791
Bbv12I GWGCWC 2 cut(s) 500, 525
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 2 cut(s) 463, 577
BccI CCATC 2 cut(s) 100, 534
BciT130I CCWGG 2 cut(s) 773, 912
BciVI GTATCC 2 cut(s) 191, 382
BcoDI GTCTC 1 cut(s) 839
BfaI CTAG 2 cut(s) 353, 794
BfrI CTTAAG 1 cut(s) 185
BfuI GTATCC 2 cut(s) 191, 382
BisI GCNGC 4 cut(s) 9, 45, 477, 591
BlpI GCTNAGC 1 cut(s) 398
BlsI GCNGC 4 cut(s) 10, 46, 478, 592
Bme1390I CCNGG 2 cut(s) 773, 912
Bme18I GGWCC 2 cut(s) 373, 611
BmgT120I GGNCC 3 cut(s) 373, 611, 775
BmiI GGNNCC 2 cut(s) 613, 715
BmrFI CCNGG 2 cut(s) 773, 912
BmrI ACTGGG 2 cut(s) 208, 332
BmsI GCATC 2 cut(s) 602, 747
BmuI ACTGGG 2 cut(s) 208, 332
BoxI GACNNNNGTC 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 791
Bpu10I CCTNAGC 2 cut(s) 228, 722
Bpu1102I GCTNAGC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 367
BsaAI YACGTR 1 cut(s) 520
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 3 cut(s) 418, 462, 772
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 270
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 4 cut(s) 214, 338, 581, 727
Bse3DI GCAATG 3 cut(s) 702, 864, 901
BseBI CCWGG 2 cut(s) 773, 912
BseDI CCNNGG 3 cut(s) 418, 462, 772
BseGI GGATG 4 cut(s) 201, 279, 902, 991
BseLI CCNNNNNNNGG 2 cut(s) 51, 270
BseMI GCAATG 3 cut(s) 702, 864, 901
BseMII CTCAG 2 cut(s) 219, 736
BseNI ACTGG 4 cut(s) 214, 338, 581, 727
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 2 cut(s) 463, 577
BseYI CCCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 320
BshFI GGCC 1 cut(s) 777
BsiHKAI GWGCWC 2 cut(s) 500, 525
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 2 cut(s) 582, 597
BslI CCNNNNNNNGG 2 cut(s) 51, 270
BsmAI GTCTC 1 cut(s) 839
BsmFI GGGAC 2 cut(s) 582, 597
BsnI GGCC 1 cut(s) 777
Bso31I GGTCTC 1 cut(s) 839
Bsp1286I GDGCHC 2 cut(s) 500, 525
Bsp143I GATC 3 cut(s) 315, 333, 801
Bsp1720I GCTNAGC 1 cut(s) 398
Bsp68I TCGCGA 1 cut(s) 320
BspACI CCGC 4 cut(s) 9, 45, 707, 933
BspANI GGCC 1 cut(s) 777
BspCNI CTCAG 2 cut(s) 220, 735
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 2 cut(s) 613, 715
BspPI GGATC 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 839
BsrBI CCGCTC 1 cut(s) 935
BsrDI GCAATG 3 cut(s) 702, 864, 901
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 4 cut(s) 214, 338, 581, 727
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 3 cut(s) 418, 462, 772
BssMI GATC 3 cut(s) 315, 333, 801
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 2 cut(s) 418, 462
Bst2UI CCWGG 2 cut(s) 773, 912
Bst4CI ACNGT 4 cut(s) 439, 513, 646, 964
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 5 cut(s) 228, 398, 548, 722, 805
BstF5I GGATG 4 cut(s) 201, 279, 902, 991
BstFNI CGCG 1 cut(s) 320
BstKTI GATC 3 cut(s) 318, 336, 804
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 3 cut(s) 315, 333, 801
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 2 cut(s) 773, 912
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 771, 910
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 463, 577
BstV2I GAAGAC 1 cut(s) 791
BsuI GTATCC 2 cut(s) 191, 382
BsuRI GGCC 1 cut(s) 777
BtsCI GGATG 4 cut(s) 201, 279, 902, 991
BtsI GCAGTG 2 cut(s) 221, 498
BtsIMutI CAGTG 4 cut(s) 221, 498, 681, 960
BtuMI TCGCGA 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 373, 611, 775
CseI GACGC 2 cut(s) 50, 914
Csp6I GTAC 2 cut(s) 435, 584
CviAII CATG 4 cut(s) 51, 116, 345, 874
CviQI GTAC 2 cut(s) 435, 584
DdeI CTNAG 5 cut(s) 228, 398, 548, 722, 805
DpnI GATC 3 cut(s) 317, 335, 803
DpnII GATC 3 cut(s) 315, 333, 801
Eco130I CCWWGG 2 cut(s) 418, 462
Eco31I GGTCTC 1 cut(s) 839
Eco47I GGWCC 2 cut(s) 373, 611
Eco57I CTGAAG 1 cut(s) 999
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 771, 910
EcoT14I CCWWGG 2 cut(s) 418, 462
EcoT22I ATGCAT 2 cut(s) 655, 740
ErhI CCWWGG 2 cut(s) 418, 462
FaeI CATG 4 cut(s) 54, 119, 348, 877
FaqI GGGAC 2 cut(s) 582, 597
FatI CATG 4 cut(s) 50, 115, 344, 873
FauNDI CATATG 3 cut(s) 655, 734, 780
Fnu4HI GCNGC 4 cut(s) 9, 45, 477, 591
FokI GGATG 3 cut(s) 188, 286, 889
Fsp4HI GCNGC 4 cut(s) 9, 45, 477, 591
FspBI CTAG 2 cut(s) 353, 794
GluI GCNGC 4 cut(s) 9, 45, 477, 591
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 1 cut(s) 777
HapII CCGG 1 cut(s) 12
HgaI GACGC 2 cut(s) 50, 914
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 54, 119, 348, 877
HincII GTYRAC 2 cut(s) 141, 633
HindII GTYRAC 2 cut(s) 141, 633
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 6 cut(s) 34, 306, 685, 790, 810, 971
HpaI GTTAAC 1 cut(s) 141
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 4 cut(s) 141, 523, 622, 633
Hpy188I TCNGA 4 cut(s) 315, 377, 970, 979
Hpy188III TCNNGA 4 cut(s) 38, 319, 353, 799
Hpy8I GTNNAC 4 cut(s) 141, 523, 622, 633
Hpy99I CGWCG 1 cut(s) 930
HpyAV CCTTC 3 cut(s) 22, 219, 625
HpyCH4III ACNGT 4 cut(s) 439, 513, 646, 964
HpyCH4IV ACGT 2 cut(s) 137, 519
HpyCH4V TGCA 9 cut(s) 151, 254, 523, 578, 593, 653, 699, 738, 869
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 5 cut(s) 228, 398, 548, 722, 805
HpySE526I ACGT 2 cut(s) 137, 519
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 54, 119, 348, 877
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 3 cut(s) 315, 333, 801
LmnI GCTCC 3 cut(s) 495, 922, 940
Lsp1109I GCAGC 2 cut(s) 463, 577
LweI GCATC 2 cut(s) 602, 747
MaeI CTAG 2 cut(s) 353, 794
MaeII ACGT 2 cut(s) 137, 519
MaeIII GTNAC 3 cut(s) 67, 216, 439
MalI GATC 3 cut(s) 317, 335, 803
MbiI CCGCTC 1 cut(s) 935
MboI GATC 3 cut(s) 315, 333, 801
MboII GAAGA 3 cut(s) 521, 796, 964
MhlI GDGCHC 2 cut(s) 500, 525
MluCI AATT 2 cut(s) 256, 849
MlyI GAGTC 2 cut(s) 28, 980
MmeI TCCRAC 2 cut(s) 58, 283
MnlI CCTC 7 cut(s) 58, 349, 731, 823, 908, 910, 985
Mph1103I ATGCAT 2 cut(s) 655, 740
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 4 cut(s) 140, 186, 287, 456
MslI CAYNNNNRTG 1 cut(s) 878
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 773, 912
MvaI CCWGG 2 cut(s) 773, 912
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 485
NaeI GCCGGC 1 cut(s) 13
NdeI CATATG 3 cut(s) 655, 734, 780
NdeII GATC 3 cut(s) 315, 333, 801
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 4 cut(s) 54, 119, 348, 877
NlaIV GGNNCC 2 cut(s) 613, 715
NruI TCGCGA 1 cut(s) 320
NsiI ATGCAT 2 cut(s) 655, 740
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 4 cut(s) 306, 685, 790, 810
PflFI GACNNNGTC 1 cut(s) 371
PkrI GCNGC 4 cut(s) 10, 46, 478, 592
PleI GAGTC 2 cut(s) 28, 979
PpsI GAGTC 2 cut(s) 28, 979
Ppu21I YACGTR 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 611
PshAI GACNNNNGTC 1 cut(s) 179
Psp1406I AACGTT 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 771, 910
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 771, 910
PspN4I GGNNCC 2 cut(s) 613, 715
PspPI GGNCC 3 cut(s) 373, 611, 775
PspPPI RGGWCCY 1 cut(s) 611
PsyI GACNNNGTC 1 cut(s) 371
RruI TCGCGA 1 cut(s) 320
RsaI GTAC 2 cut(s) 436, 585
RsaNI GTAC 2 cut(s) 435, 584
RseI CAYNNNNRTG 1 cut(s) 878
SaqAI TTAA 4 cut(s) 140, 186, 287, 456
SatI GCNGC 4 cut(s) 9, 45, 477, 591
Sau3AI GATC 3 cut(s) 315, 333, 801
Sau96I GGNCC 3 cut(s) 373, 611, 775
SchI GAGTC 2 cut(s) 28, 980
ScrFI CCNGG 2 cut(s) 773, 912
SduI GDGCHC 2 cut(s) 500, 525
SfaNI GCATC 2 cut(s) 602, 747
SinI GGWCC 2 cut(s) 373, 611
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 2 cut(s) 185, 382
SmoI CTYRAG 2 cut(s) 185, 382
Sse9I AATT 2 cut(s) 256, 849
SsiI CCGC 4 cut(s) 9, 45, 707, 933
SspMI CTAG 2 cut(s) 353, 794
StyD4I CCNGG 2 cut(s) 771, 910
StyI CCWWGG 2 cut(s) 418, 462
TaaI ACNGT 4 cut(s) 439, 513, 646, 964
TaiI ACGT 2 cut(s) 140, 522
TasI AATT 2 cut(s) 256, 849
TatI WGTACW 2 cut(s) 434, 583
TauI GCSGC 2 cut(s) 11, 47
TfiI GAWTC 4 cut(s) 306, 685, 790, 810
Tru1I TTAA 4 cut(s) 140, 186, 287, 456
Tru9I TTAA 4 cut(s) 140, 186, 287, 456
TscAI CASTG 4 cut(s) 228, 505, 681, 967
TseI GCWGC 2 cut(s) 476, 590
TspDTI ATGAA 5 cut(s) 290, 721, 797, 802, 853
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 4 cut(s) 228, 505, 681, 967
Tth111I GACNNNGTC 1 cut(s) 371
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 521
VpaK11BI GGWCC 2 cut(s) 373, 611
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 352
XspI CTAG 2 cut(s) 353, 794
Zsp2I ATGCAT 2 cut(s) 655, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.