Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009931

Physical Location & Seq

Genomic Coordinates Reverse (-)

25431429 .. 25434880

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28940.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTTCAGCAGGCAAAGCTGATCGGAAGGCTTCTCTTGATGCCGCGTCATGGTTGTTCAATGTCGTCACATCTGTTGGTATAATCATTGTCAATAAATCGTTGATGGCTACGCACGGTTTCAGTTTCGCAACAACATTAACGGGTCTGCATTTTGCCACAACAACCTTACTGACCGTTGTTCTTAAATGGCTGGGATATATCCAGCCCTCTCAACTACCGTTACCTGATCTATTGAAATTTGTTTTATTTGCGAATTTCTCCATAGTCGGAATGAATGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGATCGCAAAGCTGACTATGATCCCAGTATCATGTTTTCTTGAAGTTGTCTTGGACAATGTGCGTTACTCAAGGGGCACAAAGCTGAGCATAACATTGGTTCTCCTGGGTGTTGCAGTTTGTACTGTTACTGATGTCAGTGTCAATGCCAAGGGCTTTATAGCTGCTTTAGTAGCAGTTTGGAGCACTGCCCTTCAACAGCATTATGTACACTCTCTTCAACGGAAGTATTCTCTTGGGTCTTTCAACTTATTGGGACATACTGCACCGGTACAGGCTGCATCTTTGCTGATATTAGGCCCCTTCTTGGACTACTGGTTGACAAATAAAACAGTTTACGCATACGACTATCATTTGATATCCACAGCTCTAATCGTGTGGTTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0012505 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015931 GO:0015932 GO:0016020 GO:0022804 GO:0022857 GO:0031090 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

234

Amino Acids

25.48

Weight (kDa)

9.28

Isoelectric Point (pI)

25.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39390 AT4G39390 AT4G39390
fragaria_vesca	FvH4_1g23140
malus_domestica	MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica	Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis	pycom01g04620 pycom15g28940
rosa_chinensis	RchiOBHm_Chr2g0117861
rosa_laevigata	RLG00000018380
rosa_multiflora	Rmu_sc0011918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126160
rosa_rugosa	Rorug02G0214600
rosa_samantha	Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana	Rw2G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	2 cut(s)	239, 256
AfaI	GTAC	3 cut(s)	436, 522, 585
AfiI	CCNNNNNNNGG	2 cut(s)	51, 619
AgeI	ACCGGT	1 cut(s)	580
AgsI	TTSAA	6 cut(s)	61, 238, 356, 509, 533, 559
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	5 cut(s)	20, 325, 397, 476, 680
AluI	AGCT	5 cut(s)	20, 325, 397, 476, 680
Alw21I	GWGCWC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	2 cut(s)	476, 590
ApoI	RAATTY	2 cut(s)	239, 256
AsiGI	ACCGGT	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	392
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	463, 577
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	419
BisI	GCNGC	3 cut(s)	45, 477, 591
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	3 cut(s)	46, 478, 592
Bme1390I	CCNGG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	31, 602
BmuI	ACTGGG	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	418, 462
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 619
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	338, 632
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	418, 462
BseLI	CCNNNNNNNGG	2 cut(s)	51, 619
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	2 cut(s)	338, 632
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	463, 577
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	561
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	612
BshTI	ACCGGT	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	581
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	2 cut(s)	51, 619
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	392, 500
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	4 cut(s)	22, 229, 315, 333
Bsp1720I	GCTNAGC	1 cut(s)	398
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	613
BspPI	GGATC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	580
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	338, 632
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	2 cut(s)	418, 462
BssMI	GATC	4 cut(s)	22, 229, 315, 333
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	5 cut(s)	119, 178, 222, 439, 646
Bst6I	CTCTTC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	398
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	4 cut(s)	25, 232, 318, 336
BstMBI	GATC	4 cut(s)	22, 229, 315, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 485
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	463, 577
BsuRI	GGCC	1 cut(s)	612
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	457, 498
Cac8I	GCNNGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	611
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	435, 521, 584
CspAI	ACCGGT	1 cut(s)	580
CviAII	CATG	2 cut(s)	51, 345
CviQI	GTAC	3 cut(s)	435, 521, 584
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	4 cut(s)	24, 231, 317, 335
DpnII	GATC	4 cut(s)	22, 229, 315, 333
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	672
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	2 cut(s)	54, 348
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	2 cut(s)	50, 344
Fnu4HI	GCNGC	3 cut(s)	45, 477, 591
Fsp4HI	GCNGC	3 cut(s)	45, 477, 591
GluI	GCNGC	3 cut(s)	45, 477, 591
GsaI	CCCAGC	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	1 cut(s)	581
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	54, 348
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HinfI	GANTC	1 cut(s)	306
HpaII	CCGG	1 cut(s)	581
Hpy166II	GTNNAC	3 cut(s)	523, 633, 649
Hpy188I	TCNGA	3 cut(s)	27, 272, 315
Hpy188III	TCNNGA	2 cut(s)	38, 353
Hpy8I	GTNNAC	3 cut(s)	523, 633, 649
HpyAV	CCTTC	3 cut(s)	22, 515, 625
HpyCH4III	ACNGT	5 cut(s)	119, 178, 222, 439, 646
HpyCH4V	TGCA	4 cut(s)	151, 428, 578, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 485
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	54, 348
Kzo9I	GATC	4 cut(s)	22, 229, 315, 333
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	9 cut(s)	179, 218, 240, 351, 404, 431, 572, 594, 613
Lsp1109I	GCAGC	2 cut(s)	463, 577
LweI	GCATC	2 cut(s)	31, 602
MaeIII	GTNAC	4 cut(s)	67, 222, 377, 439
MalI	GATC	4 cut(s)	24, 231, 317, 335
MboI	GATC	4 cut(s)	22, 229, 315, 333
MboII	GAAGA	1 cut(s)	521
MhlI	GDGCHC	2 cut(s)	392, 500
MluCI	AATT	2 cut(s)	239, 256
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	1 cut(s)	220
MseI	TTAA	3 cut(s)	140, 186, 287
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	17, 485
NdeII	GATC	4 cut(s)	22, 229, 315, 333
NlaIII	CATG	2 cut(s)	54, 348
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	306
PinAI	ACCGGT	1 cut(s)	580
PkrI	GCNGC	3 cut(s)	46, 478, 592
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	1 cut(s)	611
RsaI	GTAC	3 cut(s)	436, 522, 585
RsaNI	GTAC	3 cut(s)	435, 521, 584
SaqAI	TTAA	3 cut(s)	140, 186, 287
SatI	GCNGC	3 cut(s)	45, 477, 591
Sau3AI	GATC	4 cut(s)	22, 229, 315, 333
Sau96I	GGNCC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	2 cut(s)	392, 500
SetI	ASST	7 cut(s)	22, 170, 229, 327, 399, 478, 682
SfaNI	GCATC	2 cut(s)	31, 602
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	2 cut(s)	239, 256
SsiI	CCGC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	5 cut(s)	119, 178, 222, 439, 646
TasI	AATT	2 cut(s)	239, 256
TatI	WGTACW	2 cut(s)	434, 520
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	3 cut(s)	140, 186, 287
Tru9I	TTAA	3 cut(s)	140, 186, 287
TscAI	CASTG	2 cut(s)	457, 505
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	476, 590
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	2 cut(s)	457, 505
XapI	RAATTY	2 cut(s)	239, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.