Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009931

Physical Location & Seq

Genomic Coordinates Reverse (-)

29716401 .. 29721044

Gene Structure 4644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGTGCCGCCAAAGGTGATAGGAAGGCGACTCTTGACGCCGCCTCATGGCTGTTCAATGTGGTTACATCTGTTGGAATAATCATTGTCAATAAATCATTGATGGCTACGCATGGTTTCAGTTTCGCCACAACGTTAACGGGTCTGCATTTTGCCACAACAACCTTATTGACACTTGTCCTTAAGTGGCTGGGATACATCCAGCCTTCCCAGTTACCACTGCCTGAGCTTTTGAAGTTTGTTTTATTTGCAAATTTCTCCATAGTTGGGATGAATGTGAGCTTAATGTGGAACTCTGTTGGATTCTATCAGATCGCGAAGCTGACTATGATCCCAGTATCATGTTTTCTAGAGGTTGTCTTGGACAAGGTCCGATACTCAAGGGATACGAAGCTTAGCATAACATTGGTTCTTCTTGGTGTTGCAGTTTGTACTGTTACTGATGTGAGTGTTAATGCCAAGGGTTTTATAGCTGCTTTAGTGGCAGTTTGGAGCACTGCCCTACAACAGTATTACGTGCACCATCTTCAACGGAAGTATTCTCTTAGTTCTTTCAACCTATTGGGACATACTGCACCAGTACAGGCTGCATCTTTGCTGATATTAGGTCCCTTCGTGGACTTCTGGTTGACAAGGCAAAACAGTTTATGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0012505 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015931 GO:0015932 GO:0016020 GO:0022804 GO:0022857 GO:0031090 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

218

Amino Acids

23.95

Weight (kDa)

9.48

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	22 - 206	3.2e-11	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39390 AT4G39390 AT4G39390
fragaria_vesca	FvH4_1g23140
malus_domestica	MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica	Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis	pycom01g04620 pycom15g28940
rosa_chinensis	RchiOBHm_Chr2g0117861
rosa_laevigata	RLG00000018380
rosa_multiflora	Rmu_sc0011918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126160
rosa_rugosa	Rorug02G0214600
rosa_samantha	Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana	Rw2G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	317
AciI	CCGC	2 cut(s)	9, 42
AclI	AACGTT	1 cut(s)	134
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	433, 582
AfiI	CCNNNNNNNGG	2 cut(s)	48, 267
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	58, 235, 530, 556
AluBI	AGCT	5 cut(s)	229, 282, 322, 394, 473
AluI	AGCT	5 cut(s)	229, 282, 322, 394, 473
Alw21I	GWGCWC	2 cut(s)	497, 522
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	325
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	473, 587
ApoI	RAATTY	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	370, 608
AsuHPI	GGTGA	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	370, 608
BaeGI	GKGCMC	1 cut(s)	522
Bbv12I	GWGCWC	2 cut(s)	497, 522
BbvI	GCAGC	2 cut(s)	460, 574
BccI	CCATC	2 cut(s)	97, 531
BciVI	GTATCC	2 cut(s)	188, 379
BfaI	CTAG	1 cut(s)	350
BfrI	CTTAAG	1 cut(s)	182
BfuI	GTATCC	2 cut(s)	188, 379
BisI	GCNGC	4 cut(s)	9, 42, 474, 588
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	4 cut(s)	10, 43, 475, 589
Bme18I	GGWCC	2 cut(s)	370, 608
BmgT120I	GGNCC	2 cut(s)	370, 608
BmiI	GGNNCC	1 cut(s)	610
BmrI	ACTGGG	2 cut(s)	205, 329
BmsI	GCATC	1 cut(s)	599
BmuI	ACTGGG	2 cut(s)	205, 329
BoxI	GACNNNNGTC	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 267
Bse1I	ACTGG	3 cut(s)	211, 335, 578
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	2 cut(s)	198, 276
BseLI	CCNNNNNNNGG	2 cut(s)	48, 267
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	3 cut(s)	211, 335, 578
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	460, 574
BseYI	CCCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	497, 522
BslFI	GGGAC	2 cut(s)	579, 594
BslI	CCNNNNNNNGG	2 cut(s)	48, 267
BsmFI	GGGAC	2 cut(s)	579, 594
Bsp1286I	GDGCHC	2 cut(s)	497, 522
Bsp143I	GATC	2 cut(s)	312, 330
Bsp1720I	GCTNAGC	1 cut(s)	395
Bsp68I	TCGCGA	1 cut(s)	317
BspACI	CCGC	2 cut(s)	9, 42
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	610
BspPI	GGATC	1 cut(s)	325
BspTI	CTTAAG	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	211, 335, 578
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	312, 330
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	436, 510, 644
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	517
BstDEI	CTNAG	3 cut(s)	225, 395, 545
BstF5I	GGATG	2 cut(s)	198, 276
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	2 cut(s)	315, 333
BstMBI	GATC	2 cut(s)	312, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstPAI	GACNNNNGTC	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	460, 574
BsuI	GTATCC	2 cut(s)	188, 379
BtsCI	GGATG	2 cut(s)	198, 276
BtsI	GCAGTG	2 cut(s)	218, 495
BtsIMutI	CAGTG	2 cut(s)	218, 495
BtuMI	TCGCGA	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	370, 608
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	432, 581
CviAII	CATG	3 cut(s)	48, 113, 342
CviQI	GTAC	2 cut(s)	432, 581
DdeI	CTNAG	3 cut(s)	225, 395, 545
DpnI	GATC	2 cut(s)	314, 332
DpnII	GATC	2 cut(s)	312, 330
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	370, 608
EcoO109I	RGGNCCY	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	51, 116, 345
FaqI	GGGAC	2 cut(s)	579, 594
FatI	CATG	3 cut(s)	47, 112, 341
FauNDI	CATATG	1 cut(s)	653
Fnu4HI	GCNGC	4 cut(s)	9, 42, 474, 588
FokI	GGATG	2 cut(s)	185, 283
Fsp4HI	GCNGC	4 cut(s)	9, 42, 474, 588
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	4 cut(s)	9, 42, 474, 588
GsaI	CCCAGC	1 cut(s)	194
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	51, 116, 345
HincII	GTYRAC	2 cut(s)	138, 630
HindII	GTYRAC	2 cut(s)	138, 630
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	2 cut(s)	31, 303
HpaI	GTTAAC	1 cut(s)	138
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	4 cut(s)	138, 520, 619, 630
Hpy188I	TCNGA	2 cut(s)	312, 374
Hpy188III	TCNNGA	3 cut(s)	35, 316, 350
Hpy8I	GTNNAC	4 cut(s)	138, 520, 619, 630
HpyAV	CCTTC	3 cut(s)	19, 216, 622
HpyCH4III	ACNGT	3 cut(s)	436, 510, 644
HpyCH4IV	ACGT	2 cut(s)	134, 516
HpyCH4V	TGCA	7 cut(s)	148, 251, 425, 520, 575, 590, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	3 cut(s)	225, 395, 545
HpySE526I	ACGT	2 cut(s)	134, 516
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	51, 116, 345
KspAI	GTTAAC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	312, 330
LmnI	GCTCC	1 cut(s)	492
LpnPI	CCDG	8 cut(s)	176, 215, 224, 237, 348, 569, 591, 610
Lsp1109I	GCAGC	2 cut(s)	460, 574
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	2 cut(s)	134, 516
MaeIII	GTNAC	3 cut(s)	64, 213, 436
MalI	GATC	2 cut(s)	314, 332
MboI	GATC	2 cut(s)	312, 330
MboII	GAAGA	2 cut(s)	404, 518
MhlI	GDGCHC	2 cut(s)	497, 522
MluCI	AATT	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	2 cut(s)	55, 280
MnlI	CCTC	2 cut(s)	55, 346
Mph1103I	ATGCAT	1 cut(s)	653
MseI	TTAA	4 cut(s)	137, 183, 284, 453
MspCI	CTTAAG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeI	CATATG	1 cut(s)	653
NdeII	GATC	2 cut(s)	312, 330
NlaIII	CATG	3 cut(s)	51, 116, 345
NlaIV	GGNNCC	1 cut(s)	610
NruI	TCGCGA	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	653
PfeI	GAWTC	1 cut(s)	303
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	10, 43, 475, 589
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	608
PshAI	GACNNNNGTC	1 cut(s)	176
Psp1406I	AACGTT	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	608
PspFI	CCCAGC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	370, 608
PspPPI	RGGWCCY	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	368
RruI	TCGCGA	1 cut(s)	317
RsaI	GTAC	2 cut(s)	433, 582
RsaNI	GTAC	2 cut(s)	432, 581
SaqAI	TTAA	4 cut(s)	137, 183, 284, 453
SatI	GCNGC	4 cut(s)	9, 42, 474, 588
Sau3AI	GATC	2 cut(s)	312, 330
Sau96I	GGNCC	2 cut(s)	370, 608
SchI	GAGTC	1 cut(s)	25
SduI	GDGCHC	2 cut(s)	497, 522
SfaNI	GCATC	1 cut(s)	599
SinI	GGWCC	2 cut(s)	370, 608
SmlI	CTYRAG	2 cut(s)	182, 379
SmoI	CTYRAG	2 cut(s)	182, 379
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	2 cut(s)	9, 42
SspMI	CTAG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	436, 510, 644
TaiI	ACGT	2 cut(s)	137, 519
TasI	AATT	1 cut(s)	253
TatI	WGTACW	2 cut(s)	431, 580
TauI	GCSGC	2 cut(s)	11, 44
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	4 cut(s)	137, 183, 284, 453
Tru9I	TTAA	4 cut(s)	137, 183, 284, 453
TscAI	CASTG	2 cut(s)	225, 502
TseI	GCWGC	2 cut(s)	473, 587
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	2 cut(s)	225, 502
Tth111I	GACNNNGTC	1 cut(s)	368
Vha464I	CTTAAG	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	370, 608
XapI	RAATTY	1 cut(s)	253
XbaI	TCTAGA	1 cut(s)	349
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.