Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009931

Physical Location & Seq

Genomic Coordinates Forward (+)

20505378 .. 20508706

Gene Structure 3329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0214600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGATGTCCTCCGACAACACGCCGGCGAAAAAGCCGGAAGACGACACCCAACAAGGAGGAGGAGGAGGATCAGGCAACAGCCGCAAAACGACATCGTCCAAGGCCCCGCCGGAGCAAGCCCTCAAGTGTCCGAGATGTGATTCCCCCAACACAAAGTTCTGCTACTACAACAACTACAGCCTGACGCAGCCCAGACACTTCTGTAAGACCTGCAGGCGTTACTGGACCAAAGGCGGAGCGTTACGCAACGTCCCCATCGGCGGCGGCTGCCGGAAAAACAAGAGAGTGAGGTCGTCATCTTCCCGACTCTCCTGCAGCCTCGACTCCAAAGACTCCGGCGACTCGGCCTCTGACCACATGGGTCTCAAGTTCTTTCACGGCATTTCCCCAGCCATGGATTTCCAGCTCGGCGGCCTCTCCTTGCCTAGACTCAACCACCACCCTTCTTCTTCTTCAGCAGTTGTAACCGCCCTTTACAATAACAACAACAGCCAGTTCTCTCCATACGGTGACGTTTCGGTTACTTCTGGCCTGACTCTTGATCACTCAGGTGGTGCTTCTGGGAATAGTTCCTTTATGGGTTTTAACTATCCTCTCACTTTAGGCAGTGGAAGCGGCGGCGGGGTTGGGTTTCAACAGAACAACATGAACAGTTCCATGAGTGTTCATAGCAGTCTTGCTTCTTCTATTGAGTCCCTTAGTTCTATCAACCAAGACCTTCACTGGAAATTACAGCAGCAGAGGCTGTCCATGTTGTTTGGTACTACTATCGCCGGAGATAGTCAGACACAGCCGTCTCAGAAAGATATGCAGATGAATGATCTCGAGAAAACTCAGACAGCGCCTATTTTGTTTCAGAATCTGGAGATTTCGAAACCGAAAGAGTCTACCGGAGGAGGAGATACGGCTGCGACGGAGTGGTTCTTTGGGAACTCTTACGCGCCGCCACCGCCGGTGACACCTACTCCGACCAATAGTGGCGGCAACGGAGGAGGAAACGAGAACAATGCGGGTAACTGGAATACTCATGGAGTTGTTCAAGCGTGGGGTGATTTGCAGCAATACAATGCCTTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0012505 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015931 GO:0015932 GO:0016020 GO:0022804 GO:0022857 GO:0031090 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

359

Amino Acids

38.24

Weight (kDa)

8.61

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	39 - 95	2.3e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39390 AT4G39390 AT4G39390
fragaria_vesca	FvH4_1g23140
malus_domestica	MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica	Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis	pycom01g04620 pycom15g28940
rosa_chinensis	RchiOBHm_Chr2g0117861
rosa_laevigata	RLG00000018380
rosa_multiflora	Rmu_sc0011918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126160
rosa_rugosa	Rorug02G0214600
rosa_samantha	Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana	Rw2G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	793
Acc36I	ACCTGC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	887
AccII	CGCG	1 cut(s)	941
AclWI	GGATC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	763
AfiI	CCNNNNNNNGG	2 cut(s)	260, 394
AgsI	TTSAA	2 cut(s)	635, 1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AleI	CACNNNNGTG	1 cut(s)	549
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	368, 801
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	2 cut(s)	745, 862
Ama87I	CYCGRG	1 cut(s)	824
AoxI	GGCC	4 cut(s)	102, 345, 412, 529
ApeKI	GCWGC	6 cut(s)	187, 267, 315, 736, 908, 1057
AspLEI	GCGC	2 cut(s)	844, 943
AspS9I	GGNCC	2 cut(s)	103, 225
AsuHPI	GGTGA	3 cut(s)	521, 967, 1061
AsuII	TTCGAA	1 cut(s)	872
AvaI	CYCGRG	1 cut(s)	824
AvaII	GGWCC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	6 cut(s)	199, 254, 327, 748, 895, 1069
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	3 cut(s)	394, 778, 921
BcgI	CGANNNNNNTGC	4 cut(s)	294, 328, 989, 1023
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	368, 801
BfaI	CTAG	2 cut(s)	426, 1078
BfmI	CTRYAG	3 cut(s)	175, 211, 313
BfoI	RGCGCY	1 cut(s)	845
BfuAI	ACCTGC	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	2 cut(s)	103, 225
BmiI	GGNNCC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	884
Bpu14I	TTCGAA	1 cut(s)	872
BpuEI	CTTGAG	2 cut(s)	107, 350
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	99, 393
BsaWI	WCCGGW	1 cut(s)	890
BsaXI	ACNNNNNCTCC	2 cut(s)	949, 979
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 394
Bse118I	RCCGGY	2 cut(s)	22, 952
Bse1I	ACTGG	4 cut(s)	227, 493, 728, 1022
BseDI	CCNNGG	2 cut(s)	99, 393
BseLI	CCNNNNNNNGG	2 cut(s)	260, 394
BseMII	CTCAG	3 cut(s)	561, 812, 848
BseNI	ACTGG	4 cut(s)	227, 493, 728, 1022
BseRI	GAGGAG	6 cut(s)	72, 75, 78, 909, 912, 1005
BseXI	GCAGC	6 cut(s)	199, 254, 327, 748, 895, 1069
BseYI	CCCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	941
BshFI	GGCC	4 cut(s)	104, 347, 414, 531
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	8 cut(s)	23, 35, 110, 271, 336, 774, 891, 953
BslFI	GGGAC	2 cut(s)	236, 679
BslI	CCNNNNNNNGG	2 cut(s)	260, 394
BsmAI	GTCTC	2 cut(s)	368, 801
BsmBI	CGTCTC	1 cut(s)	801
BsmFI	GGGAC	2 cut(s)	236, 679
BsnI	GGCC	4 cut(s)	104, 347, 414, 531
Bso31I	GGTCTC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	824
Bsp119I	TTCGAA	1 cut(s)	872
Bsp143I	GATC	3 cut(s)	68, 541, 820
Bsp19I	CCATGG	1 cut(s)	393
BspANI	GGCC	4 cut(s)	104, 347, 414, 531
BspCNI	CTCAG	3 cut(s)	560, 811, 847
BspFNI	CGCG	1 cut(s)	941
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	2 cut(s)	215, 317
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	368
BsrFI	RCCGGY	2 cut(s)	22, 952
BsrI	ACTGG	4 cut(s)	227, 493, 728, 1022
BssAI	RCCGGY	2 cut(s)	22, 952
BssECI	CCNNGG	2 cut(s)	99, 393
BssMI	GATC	3 cut(s)	68, 541, 820
BssT1I	CCWWGG	2 cut(s)	99, 393
Bst4CI	ACNGT	2 cut(s)	509, 653
BstBI	TTCGAA	1 cut(s)	872
BstC8I	GCNNGC	3 cut(s)	24, 117, 215
BstDEI	CTNAG	4 cut(s)	547, 698, 798, 834
BstDSI	CCRYGG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	941
BstH2I	RGCGCY	1 cut(s)	845
BstHHI	GCGC	2 cut(s)	844, 943
BstKTI	GATC	3 cut(s)	71, 544, 823
BstMAI	GTCTC	2 cut(s)	368, 801
BstMBI	GATC	3 cut(s)	68, 541, 820
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 267, 612, 742, 949
BstSFI	CTRYAG	3 cut(s)	175, 211, 313
BstUI	CGCG	1 cut(s)	941
BstV1I	GCAGC	6 cut(s)	199, 254, 327, 748, 895, 1069
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	4 cut(s)	104, 347, 414, 531
BtgI	CCRYGG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	2 cut(s)	613, 721
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	3 cut(s)	24, 117, 215
CaiI	CAGNNNCTG	2 cut(s)	745, 862
CfoI	GCGC	2 cut(s)	844, 943
Cfr10I	RCCGGY	2 cut(s)	22, 952
Cfr13I	GGNCC	2 cut(s)	103, 225
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	762
CviAII	CATG	6 cut(s)	358, 394, 646, 658, 751, 1028
CviQI	GTAC	1 cut(s)	762
DdeI	CTNAG	4 cut(s)	547, 698, 798, 834
DpnI	GATC	3 cut(s)	70, 543, 822
DpnII	GATC	3 cut(s)	68, 541, 820
DrdI	GACNNNNNNGTC	1 cut(s)	793
DseDI	GACNNNNNNGTC	1 cut(s)	793
EciI	GGCGGA	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	99, 393
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	824
EcoO109I	RGGNCCY	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	99, 393
ErhI	CCWWGG	2 cut(s)	99, 393
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	6 cut(s)	361, 397, 649, 661, 754, 1031
FaqI	GGGAC	2 cut(s)	236, 679
FatI	CATG	6 cut(s)	357, 393, 645, 657, 750, 1027
FauI	CCCGC	3 cut(s)	114, 614, 1003
FbaI	TGATCA	1 cut(s)	541
FblI	GTMKAC	1 cut(s)	887
FspBI	CTAG	2 cut(s)	426, 1078
GlaI	GCGC	2 cut(s)	843, 942
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	884
HaeII	RGCGCY	1 cut(s)	845
HaeIII	GGCC	4 cut(s)	104, 347, 414, 531
HapII	CCGG	8 cut(s)	23, 35, 110, 271, 336, 774, 891, 953
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	2 cut(s)	844, 943
Hin1II	CATG	6 cut(s)	361, 397, 649, 661, 754, 1031
Hin6I	GCGC	2 cut(s)	842, 941
HinP1I	GCGC	2 cut(s)	842, 941
HpaII	CCGG	8 cut(s)	23, 35, 110, 271, 336, 774, 891, 953
HphI	GGTGA	3 cut(s)	521, 967, 1061
Hpy166II	GTNNAC	1 cut(s)	888
Hpy188I	TCNGA	8 cut(s)	13, 132, 352, 786, 801, 837, 858, 969
Hpy188III	TCNNGA	5 cut(s)	303, 539, 824, 826, 863
Hpy8I	GTNNAC	1 cut(s)	888
Hpy99I	CGWCG	1 cut(s)	916
HpyAV	CCTTC	2 cut(s)	453, 728
HpyCH4III	ACNGT	2 cut(s)	509, 653
HpyCH4IV	ACGT	2 cut(s)	249, 513
HpyCH4V	TGCA	4 cut(s)	213, 315, 811, 1057
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 267, 612, 742, 949
HpyF3I	CTNAG	4 cut(s)	547, 698, 798, 834
HpySE526I	ACGT	2 cut(s)	249, 513
Hsp92II	CATG	6 cut(s)	361, 397, 649, 661, 754, 1031
HspAI	GCGC	2 cut(s)	842, 941
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	68, 541, 820
LmnI	GCTCC	2 cut(s)	112, 236
Lsp1109I	GCAGC	6 cut(s)	199, 254, 327, 748, 895, 1069
MaeI	CTAG	2 cut(s)	426, 1078
MaeII	ACGT	2 cut(s)	249, 513
MaeIII	GTNAC	7 cut(s)	218, 240, 463, 509, 520, 955, 1013
MalI	GATC	3 cut(s)	70, 543, 822
MboI	GATC	3 cut(s)	68, 541, 820
MboII	GAAGA	6 cut(s)	50, 291, 438, 441, 444, 675
MluCI	AATT	1 cut(s)	728
MlyI	GAGTC	8 cut(s)	300, 317, 326, 335, 423, 529, 701, 893
MmeI	TCCRAC	2 cut(s)	36, 992
MreI	CGCCGGCG	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	549
MspI	CCGG	8 cut(s)	23, 35, 110, 271, 336, 774, 891, 953
MvnI	CGCG	1 cut(s)	941
MwoI	GCNNNNNNNGC	5 cut(s)	81, 267, 612, 742, 949
NaeI	GCCGGC	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	68, 541, 820
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	6 cut(s)	361, 397, 649, 661, 754, 1031
NlaIV	GGNNCC	1 cut(s)	105
NmeAIII	GCCGAG	2 cut(s)	323, 387
NmuCI	GTSAC	2 cut(s)	509, 955
NspV	TTCGAA	1 cut(s)	872
OliI	CACNNNNGTG	1 cut(s)	549
PaeR7I	CTCGAG	1 cut(s)	824
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	140, 859
PflFI	GACNNNGTC	1 cut(s)	94
PleI	GAGTC	8 cut(s)	300, 317, 326, 335, 423, 529, 700, 892
PpsI	GAGTC	8 cut(s)	300, 317, 326, 335, 423, 529, 700, 892
PspFI	CCCAGC	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	103, 225
PstI	CTGCAG	2 cut(s)	215, 317
PstNI	CAGNNNCTG	2 cut(s)	745, 862
PsyI	GACNNNGTC	1 cut(s)	94
RsaI	GTAC	1 cut(s)	763
RsaNI	GTAC	1 cut(s)	762
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	585
Sau3AI	GATC	3 cut(s)	68, 541, 820
Sau96I	GGNCC	2 cut(s)	103, 225
SbfI	CCTGCAGG	1 cut(s)	215
SchI	GAGTC	8 cut(s)	300, 317, 326, 335, 423, 529, 701, 893
SdaI	CCTGCAGG	1 cut(s)	215
SetI	ASST	8 cut(s)	212, 252, 293, 408, 516, 553, 720, 964
SfcI	CTRYAG	3 cut(s)	175, 211, 313
Sfr274I	CTCGAG	1 cut(s)	824
SfuI	TTCGAA	1 cut(s)	872
SgrAI	CRCCGGYG	2 cut(s)	22, 952
SinI	GGWCC	1 cut(s)	225
SlaI	CTCGAG	1 cut(s)	824
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	3 cut(s)	122, 365, 824
SmoI	CTYRAG	3 cut(s)	122, 365, 824
Sse8387I	CCTGCAGG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	728
SspMI	CTAG	2 cut(s)	426, 1078
StyI	CCWWGG	2 cut(s)	99, 393
TaaI	ACNGT	2 cut(s)	509, 653
TaiI	ACGT	2 cut(s)	252, 516
TaqI	TCGA	3 cut(s)	321, 825, 872
TasI	AATT	1 cut(s)	728
TauI	GCSGC	8 cut(s)	84, 264, 267, 414, 618, 621, 946, 984
TfiI	GAWTC	2 cut(s)	140, 859
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	2 cut(s)	613, 728
TseFI	GTSAC	2 cut(s)	509, 955
TseI	GCWGC	6 cut(s)	187, 267, 315, 736, 908, 1057
Tsp45I	GTSAC	2 cut(s)	509, 955
TspDTI	ATGAA	3 cut(s)	656, 662, 830
TspGWI	ACGGA	2 cut(s)	929, 1002
TspRI	CASTG	2 cut(s)	613, 728
Tth111I	GACNNNGTC	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	225
XhoI	CTCGAG	1 cut(s)	824
XmiI	GTMKAC	1 cut(s)	887
XspI	CTAG	2 cut(s)	426, 1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.