FvH4_1g23140

UDP-galactose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009931
Physical Location & Seq
Reverse (-)
14993670 .. 14998109
4440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23140.t1

Sequence Viewer

Length: 996 bp
ATGAGTGCCAGCAAAGGGGATAGGAAGGCGACTCTTGACGCAGCGTCGTGGCTGTTCAATGTGGTTACTTCTGTTGGAATCATCATTGTCAATAAATCGTTGATGGCTAAGCATGGTTTCAGTTTCGCCACAACATTAACGGGTCTGCATTTTGCCACAACAACCTTATTGACACTTGTCCTTAAGTGGCTGGGATACATCCAGCCTTCCCAATTACCAGTGCCCGAGCTTTTGAAGTTTGTTTTATTTGCGAATTTCTCCATAGTTGGGATGAATGTGAGCTTAATGTGGAACTCTGTTGGATTCTATCAGATCGCGAAGCTGACTATGATCCCAGTATCATGTTTTCTAGAGGTTGTCTTGGACAAGGTGCGATACTCAAGGGATACGAAGCTTAGCATAACATTGGTTCTCCTTGGTGTTGCAGTTTGTACTGTTACTGATGTGAGTGTTAATGCCAAAGGTTTTATAGCTGCTTCAGTGGCAGTTTGGAGCACAGCCTTACAACAGTATTATGTGCACCATCTTCAACGGAAGTATTCTCTAAGTTCTTTCAACCTTTTGGGACATACTGCACCAGTACAGGCTGCATCTTTGCTGATAGTGGGCCCCTTTGTGGACTTCTGGTTGACAGGCAAAACAGTTTATGCATATGACTATCATTTTATATCAGTGTCATTGATTCTCCTATCCTGCAGCATTGCGGTAGGAACCAACCTCAGCCAGTTCATATGCATCGGCAGATTTACTGCCGTGTCATTCCAAGTTCTGGGTCATATGAAGACAATTCTAGTCTTGATCTTAGGATTCATATTCTTTGGGAAAGAGGGTCTCAATCATCAAGTAGTATTAGGTATGTTCATTGCGATCATGGGAATGATATGGTATGGGAATGCCTCTTCCAAACCAGGAGGCAAGGAGCGTCGTTCCACTCCAAGCAAATCCCAGAAGAAAGGCGCTGTATCAGAGTCCTCAGAAGTGGATGACAAGGTATAG

Protein Analysis

332

Amino Acids

36.17

Weight (kDa)

9.55

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 22 - 296 1.1e-14 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39390 AT4G39390 AT4G39390
fragaria_vesca FvH4_1g23140
malus_domestica MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis pycom01g04620 pycom15g28940
rosa_chinensis RchiOBHm_Chr2g0117861
rosa_laevigata RLG00000018380
rosa_multiflora Rmu_sc0011918.1_g000001
rosa_roxburghii Rroxscaffold_2G00126160
rosa_rugosa Rorug02G0214600
rosa_samantha Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana Rw2G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 769
AccII CGCG 1 cut(s) 317
AciI CCGC 1 cut(s) 704
AclWI GGATC 1 cut(s) 325
AcsI RAATTY 1 cut(s) 253
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 2 cut(s) 433, 582
AfiI CCNNNNNNNGG 4 cut(s) 15, 267, 616, 769
AflII CTTAAG 1 cut(s) 182
AgsI TTSAA 4 cut(s) 58, 235, 530, 556
AhdI GACNNNNNGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 907
AluBI AGCT 5 cut(s) 229, 282, 322, 394, 473
AluI AGCT 5 cut(s) 229, 282, 322, 394, 473
Alw21I GWGCWC 2 cut(s) 497, 522
Alw26I GTCTC 1 cut(s) 836
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 607
ApaI GGGCCC 1 cut(s) 611
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 4 cut(s) 41, 473, 587, 696
ApoI RAATTY 1 cut(s) 253
AspLEI GCGC 1 cut(s) 959
AspS9I GGNCC 2 cut(s) 607, 608
AvaI CYCGRG 1 cut(s) 224
BaeGI GKGCMC 3 cut(s) 225, 522, 611
BanII GRGCYC 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 788
Bbv12I GWGCWC 2 cut(s) 497, 522
BbvCI CCTCAGC 1 cut(s) 719
BbvI GCAGC 4 cut(s) 53, 460, 574, 708
BccI CCATC 2 cut(s) 97, 531
BceAI ACGGC 1 cut(s) 737
BciT130I CCWGG 1 cut(s) 909
BciVI GTATCC 2 cut(s) 188, 379
BcoDI GTCTC 1 cut(s) 836
BfaI CTAG 2 cut(s) 350, 791
BfmI CTRYAG 1 cut(s) 694
BfoI RGCGCY 1 cut(s) 960
BfrI CTTAAG 1 cut(s) 182
BfuI GTATCC 2 cut(s) 188, 379
BisI GCNGC 4 cut(s) 42, 474, 588, 697
BlpI GCTNAGC 2 cut(s) 108, 395
BlsI GCNGC 4 cut(s) 43, 475, 589, 698
Bme1390I CCNGG 1 cut(s) 909
BmeRI GACNNNNNGTC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 607, 608
BmiI GGNNCC 3 cut(s) 609, 610, 712
BmrFI CCNGG 1 cut(s) 909
BmrI ACTGGG 1 cut(s) 329
BmsI GCATC 2 cut(s) 599, 744
BmuI ACTGGG 1 cut(s) 329
BoxI GACNNNNGTC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 719
Bpu1102I GCTNAGC 2 cut(s) 108, 395
BpuEI CTTGAG 1 cut(s) 364
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 1 cut(s) 415
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 267, 616, 769
Bse1I ACTGG 4 cut(s) 218, 335, 578, 724
Bse3DI GCAATG 2 cut(s) 699, 861
BseBI CCWGG 1 cut(s) 909
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 3 cut(s) 198, 276, 988
BseLI CCNNNNNNNGG 4 cut(s) 15, 267, 616, 769
BseMI GCAATG 2 cut(s) 699, 861
BseMII CTCAG 2 cut(s) 733, 987
BseNI ACTGG 4 cut(s) 218, 335, 578, 724
BseSI GKGCMC 3 cut(s) 225, 522, 611
BseXI GCAGC 4 cut(s) 53, 460, 574, 708
BseYI CCCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 1 cut(s) 609
BsiHKAI GWGCWC 2 cut(s) 497, 522
BsiHKCI CYCGRG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 4 cut(s) 15, 267, 616, 769
BsmAI GTCTC 1 cut(s) 836
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 1 cut(s) 609
Bso31I GGTCTC 1 cut(s) 836
BsoBI CYCGRG 1 cut(s) 224
Bsp120I GGGCCC 1 cut(s) 607
Bsp1286I GDGCHC 4 cut(s) 225, 497, 522, 611
Bsp143I GATC 4 cut(s) 312, 330, 798, 867
Bsp1720I GCTNAGC 2 cut(s) 108, 395
Bsp68I TCGCGA 1 cut(s) 317
BspACI CCGC 1 cut(s) 704
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 2 cut(s) 732, 986
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 3 cut(s) 609, 610, 712
BspMAI CTGCAG 1 cut(s) 698
BspPI GGATC 1 cut(s) 325
BspTI CTTAAG 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 836
BsrDI GCAATG 2 cut(s) 699, 861
BsrI ACTGG 4 cut(s) 218, 335, 578, 724
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 4 cut(s) 312, 330, 798, 867
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 909
Bst4CI ACNGT 3 cut(s) 436, 510, 643
Bst6I CTCTTC 1 cut(s) 904
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 6 cut(s) 108, 395, 545, 719, 802, 973
BstF5I GGATG 3 cut(s) 198, 276, 988
BstFNI CGCG 1 cut(s) 317
BstH2I RGCGCY 1 cut(s) 960
BstHHI GCGC 1 cut(s) 959
BstKTI GATC 4 cut(s) 315, 333, 801, 870
BstMAI GTCTC 1 cut(s) 836
BstMBI GATC 4 cut(s) 312, 330, 798, 867
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 909
BstPAI GACNNNNGTC 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 907
BstSFI CTRYAG 1 cut(s) 694
BstSLI GKGCMC 3 cut(s) 225, 522, 611
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 4 cut(s) 53, 460, 574, 708
BstV2I GAAGAC 1 cut(s) 788
BsuI GTATCC 2 cut(s) 188, 379
BsuRI GGCC 1 cut(s) 609
BtsCI GGATG 3 cut(s) 198, 276, 988
BtsIMutI CAGTG 3 cut(s) 225, 486, 678
BtuMI TCGCGA 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 1 cut(s) 959
Cfr13I GGNCC 2 cut(s) 607, 608
CseI GACGC 3 cut(s) 33, 47, 911
Csp6I GTAC 2 cut(s) 432, 581
CviAII CATG 3 cut(s) 113, 342, 871
CviQI GTAC 2 cut(s) 432, 581
DdeI CTNAG 6 cut(s) 108, 395, 545, 719, 802, 973
DpnI GATC 4 cut(s) 314, 332, 800, 869
DpnII GATC 4 cut(s) 312, 330, 798, 867
DriI GACNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 904
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 904
Eco130I CCWWGG 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 611
Eco31I GGTCTC 1 cut(s) 836
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 415
EcoT22I ATGCAT 2 cut(s) 652, 737
EcoT38I GRGCYC 1 cut(s) 611
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 3 cut(s) 116, 345, 874
FaqI GGGAC 1 cut(s) 579
FatI CATG 3 cut(s) 112, 341, 870
FauNDI CATATG 3 cut(s) 652, 731, 777
Fnu4HI GCNGC 4 cut(s) 42, 474, 588, 697
FokI GGATG 2 cut(s) 185, 283
FriOI GRGCYC 1 cut(s) 611
Fsp4HI GCNGC 4 cut(s) 42, 474, 588, 697
FspBI CTAG 2 cut(s) 350, 791
GlaI GCGC 1 cut(s) 958
GluI GCNGC 4 cut(s) 42, 474, 588, 697
GsaI CCCAGC 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 960
HaeIII GGCC 1 cut(s) 609
HgaI GACGC 3 cut(s) 33, 47, 911
HhaI GCGC 1 cut(s) 959
Hin1II CATG 3 cut(s) 116, 345, 874
Hin6I GCGC 1 cut(s) 957
HinP1I GCGC 1 cut(s) 957
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 6 cut(s) 31, 78, 303, 682, 807, 968
Hpy166II GTNNAC 3 cut(s) 520, 619, 630
Hpy188I TCNGA 3 cut(s) 312, 967, 976
Hpy188III TCNNGA 4 cut(s) 35, 316, 350, 796
Hpy8I GTNNAC 3 cut(s) 520, 619, 630
Hpy99I CGWCG 2 cut(s) 49, 927
HpyAV CCTTC 2 cut(s) 19, 216
HpyCH4III ACNGT 3 cut(s) 436, 510, 643
HpyCH4V TGCA 8 cut(s) 148, 425, 520, 575, 590, 650, 696, 735
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 6 cut(s) 108, 395, 545, 719, 802, 973
Hsp92II CATG 3 cut(s) 116, 345, 874
HspAI GCGC 1 cut(s) 957
Kzo9I GATC 4 cut(s) 312, 330, 798, 867
LmnI GCTCC 2 cut(s) 492, 919
Lsp1109I GCAGC 4 cut(s) 53, 460, 574, 708
LweI GCATC 2 cut(s) 599, 744
MaeI CTAG 2 cut(s) 350, 791
MaeIII GTNAC 2 cut(s) 64, 436
MalI GATC 4 cut(s) 314, 332, 800, 869
MboI GATC 4 cut(s) 312, 330, 798, 867
MboII GAAGA 4 cut(s) 518, 793, 891, 961
MhlI GDGCHC 4 cut(s) 225, 497, 522, 611
MluCI AATT 3 cut(s) 212, 253, 786
MlyI GAGTC 2 cut(s) 25, 977
MmeI TCCRAC 2 cut(s) 55, 280
MnlI CCTC 6 cut(s) 346, 728, 820, 905, 907, 982
Mph1103I ATGCAT 2 cut(s) 652, 737
MseI TTAA 4 cut(s) 137, 183, 284, 453
MslI CAYNNNNRTG 1 cut(s) 875
MspCI CTTAAG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 1 cut(s) 909
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 482
NdeI CATATG 3 cut(s) 652, 731, 777
NdeII GATC 4 cut(s) 312, 330, 798, 867
NlaIII CATG 3 cut(s) 116, 345, 874
NlaIV GGNNCC 3 cut(s) 609, 610, 712
NruI TCGCGA 1 cut(s) 317
NsiI ATGCAT 2 cut(s) 652, 737
PctI GAATGC 1 cut(s) 898
PfeI GAWTC 4 cut(s) 78, 303, 682, 807
PflMI CCANNNNNTGG 1 cut(s) 769
PkrI GCNGC 4 cut(s) 43, 475, 589, 698
PleI GAGTC 2 cut(s) 25, 976
PpsI GAGTC 2 cut(s) 25, 976
PshAI GACNNNNGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 907
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 907
PspN4I GGNNCC 3 cut(s) 609, 610, 712
PspOMI GGGCCC 1 cut(s) 607
PspPI GGNCC 2 cut(s) 607, 608
PstI CTGCAG 1 cut(s) 698
RruI TCGCGA 1 cut(s) 317
RsaI GTAC 2 cut(s) 433, 582
RsaNI GTAC 2 cut(s) 432, 581
RseI CAYNNNNRTG 1 cut(s) 875
SaqAI TTAA 4 cut(s) 137, 183, 284, 453
SatI GCNGC 4 cut(s) 42, 474, 588, 697
Sau3AI GATC 4 cut(s) 312, 330, 798, 867
Sau96I GGNCC 2 cut(s) 607, 608
SchI GAGTC 2 cut(s) 25, 977
ScrFI CCNGG 1 cut(s) 909
SduI GDGCHC 4 cut(s) 225, 497, 522, 611
SfaNI GCATC 2 cut(s) 599, 744
SfcI CTRYAG 1 cut(s) 694
SmiMI CAYNNNNRTG 1 cut(s) 875
SmlI CTYRAG 2 cut(s) 182, 379
SmoI CTYRAG 2 cut(s) 182, 379
Sse9I AATT 3 cut(s) 212, 253, 786
SsiI CCGC 1 cut(s) 704
SspMI CTAG 2 cut(s) 350, 791
StyD4I CCNGG 1 cut(s) 907
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 3 cut(s) 436, 510, 643
TasI AATT 3 cut(s) 212, 253, 786
TatI WGTACW 2 cut(s) 431, 580
TfiI GAWTC 4 cut(s) 78, 303, 682, 807
Tru1I TTAA 4 cut(s) 137, 183, 284, 453
Tru9I TTAA 4 cut(s) 137, 183, 284, 453
TscAI CASTG 3 cut(s) 225, 486, 678
TseI GCWGC 4 cut(s) 41, 473, 587, 696
TspDTI ATGAA 5 cut(s) 287, 718, 794, 799, 850
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 3 cut(s) 225, 486, 678
Van91I CCANNNNNTGG 1 cut(s) 769
Vha464I CTTAAG 1 cut(s) 182
VneI GTGCAC 1 cut(s) 518
XapI RAATTY 1 cut(s) 253
XbaI TCTAGA 1 cut(s) 349
XspI CTAG 2 cut(s) 350, 791
Zsp2I ATGCAT 2 cut(s) 652, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.