Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012272

Physical Location & Seq

Genomic Coordinates Reverse (-)

18475946 .. 18478060

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTTCACGGAGTCATCTCCAGCAATGGATCCGGATTTACCCGAATCCGAAACCCGACCCGAATTCAATCCCTCCTCCACTGATTCCACCGCCATGGCAGAGTCAACCGATGCAGGGGAACCGACGGCATTCGAATTAGCCTCATCCCAAGTCACATCCGTCGCCGATCTACCACCGGAACGATTCAATTCGCTCGACGAATTAACACACGATCTCGGCTCGCTCCACGAGCTTTCGACCCGTGGCTCATGGCAAGCGATCCTCGAGAAGATATCTCAAGCCAGAGCTCTCTTCCTCCTCACAAAGCCTCACGAGCATCTCACTTATCTCACTTACCAAGTTATGGCTCTCGCGAAGCTTCGTCGCTCCGATGAAGCTTCTCATGAGCTTAATTCCTTGCACGATTTCGACGGGACGCATTACAGGTACGAATCGTTCCCTGAGATTTACCCTAATCGGAGAGGATCTATGGTTCCTTTCTCTTTACGATGGCTCTACGCTTTGATCCCGACTAAGCTTGGTAATCGTCAGGAAGGGTTAGATCGTTTATATGTTTTGCTTGACTTTGTTCGAGATCGAATCAGAGAGAAAGAATCTCAGAGTTTAGAGAGTTCTGTGGAATTGTGGAAGAAAAGAGAGACATTTGTGATGAATTGCTTGCTAGGGTTTCATTTAGGTCACAAGGAATTTGGGGTGTCTTTGGATTTGATGAAGGAATTGATCAATCGTGATCCGTTAGACCCGGTTTTGATTTCGAAACTAGGGTCTGTTCAGATGCAGTTTGGTGATGTAGAAGGAGCTAAAACTACGTTTGATAGAGTTGAGAAGATGTTGAATGAAGGAAAGAGCAATGGTTTATTGAACGAGATACAGTTCAACAATCTTGTTGGTAGGAATAAGGCTTTGGTTTATGTTGTGGCAAAGGACTATGTTTCTGCTGTGAGAGAGTATGACAAATGCATTGAAAGGGATAACTCTGATATTATCGCTGTCAACAATAAGGCTCTTTGTTTGATGTACTTGAGAGATCTATCGGATGCGATTAAGGTGATGGAAAGTGCATTGGAGAGAGTGCCAACCGCGGCTTTGAACGAGAGCTTGGTGGTGAATTTGTGTAGTATGTATGAGTTGGCTTATGTTAATCATACTGATGTTAAGCGGACGTTAAACAATTGGATTGCACGTGTTGCTCCTGATGACTTTGATTCATCTTGTACCAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0003824 GO:0004175 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0006810 GO:0006888 GO:0006996 GO:0007030 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010256 GO:0016043 GO:0016192 GO:0016787 GO:0017016 GO:0017112 GO:0017137 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030008 GO:0031267 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048518 GO:0050000 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065009 GO:0070011 GO:0071704 GO:0071840 GO:0090230 GO:0090234 GO:0098687 GO:0098772 GO:0098813 GO:0099023 GO:0140096 GO:1901564 GO:1902115 GO:1903827 GO:1903829 GO:1905340 GO:1905342

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

408

Amino Acids

46.32

Weight (kDa)

5.12

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39820 AT4G39820
fragaria_vesca	FvH4_1g21530
prunus_persica	Prupe.3G102100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115391
rosa_laevigata	RLG00000018182
rosa_multiflora	Rmu_co8054726.1_g000001 Rmu_co8464345.1_g000001 Rmu_sc0001897.1_g000010 Rmu_sc0005767.1_g000004
rosa_roxburghii	Rroxscaffold_2G00128350 Rroxscaffold_2G00129130
rosa_rugosa	Rorug02G0196400 Rorug02G0196500
rosa_samantha	Rh2AG254500 Rh2BG264600 Rh2CG259100 Rh2DG262600
rosa_wichuraiana	Rw2G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccII	CGCG	2 cut(s)	353, 1082
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	4 cut(s)	90, 1080, 1082, 1159
AclWI	GGATC	6 cut(s)	23, 36, 253, 472, 499, 725
AcsI	RAATTY	3 cut(s)	62, 686, 1108
AcvI	CACGTG	1 cut(s)	1184
AfaI	GTAC	3 cut(s)	428, 1019, 1216
AfiI	CCNNNNNNNGG	2 cut(s)	114, 343
AflIII	ACRYGT	1 cut(s)	1183
AgsI	TTSAA	7 cut(s)	67, 187, 835, 862, 877, 965, 1090
AjuI	GAANNNNNNNTTGG	4 cut(s)	887, 919, 1082, 1114
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	8 cut(s)	232, 287, 358, 377, 388, 517, 800, 1098
AluI	AGCT	8 cut(s)	232, 287, 358, 377, 388, 517, 800, 1098
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	6 cut(s)	23, 36, 253, 472, 499, 725
Ama87I	CYCGRG	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	31
ApoI	RAATTY	3 cut(s)	62, 686, 1108
ArsI	GACNNNNNNTTYG	2 cut(s)	749, 781
AsuC2I	CCSGG	1 cut(s)	743
AsuHPI	GGTGA	3 cut(s)	797, 1060, 1117
AsuII	TTCGAA	2 cut(s)	132, 755
AvaI	CYCGRG	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	289
BauI	CACGAG	2 cut(s)	227, 311
BbrPI	CACGTG	1 cut(s)	1184
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	2 cut(s)	483, 1045
BceAI	ACGGC	1 cut(s)	141
BclI	TGATCA	1 cut(s)	720
BcnI	CCSGG	1 cut(s)	743
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	2 cut(s)	662, 761
BglII	AGATCT	1 cut(s)	1027
BisI	GCNGC	1 cut(s)	1083
BlsI	GCNGC	1 cut(s)	1084
Bme1390I	CCNGG	1 cut(s)	743
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	30, 120, 474
BmrFI	CCNGG	1 cut(s)	743
BmsI	GCATC	4 cut(s)	100, 325, 765, 1027
Bpu14I	TTCGAA	2 cut(s)	132, 755
BpuEI	CTTGAG	2 cut(s)	261, 1042
BpuMI	CCSGG	1 cut(s)	743
BsaAI	YACGTR	1 cut(s)	1184
BsaJI	CCNNGG	3 cut(s)	93, 241, 1080
BsaWI	WCCGGW	2 cut(s)	31, 175
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 343
Bse3DI	GCAATG	2 cut(s)	30, 856
BseAI	TCCGGA	1 cut(s)	31
BseDI	CCNNGG	3 cut(s)	93, 241, 1080
BseGI	GGATG	3 cut(s)	143, 155, 1042
BseLI	CCNNNNNNNGG	2 cut(s)	114, 343
BseMI	GCAATG	2 cut(s)	30, 856
BseMII	CTCAG	2 cut(s)	432, 611
BseRI	GAGGAG	2 cut(s)	64, 287
Bsh1236I	CGCG	2 cut(s)	353, 1082
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	32, 176, 743
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	114, 343
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	263
Bsp119I	TTCGAA	2 cut(s)	132, 755
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp13I	TCCGGA	1 cut(s)	31
Bsp19I	CCATGG	1 cut(s)	93
Bsp68I	TCGCGA	1 cut(s)	353
BspACI	CCGC	4 cut(s)	90, 1080, 1082, 1159
BspCNI	CTCAG	2 cut(s)	433, 610
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	353, 1082
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	3 cut(s)	30, 120, 474
BspPI	GGATC	6 cut(s)	23, 36, 253, 472, 499, 725
BspT104I	TTCGAA	2 cut(s)	132, 755
BsrDI	GCAATG	2 cut(s)	30, 856
BssECI	CCNNGG	3 cut(s)	93, 241, 1080
BssSI	CACGAG	2 cut(s)	227, 311
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	2 cut(s)	227, 311
Bst4CI	ACNGT	1 cut(s)	873
Bst6I	CTCTTC	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	1187
BstBAI	YACGTR	1 cut(s)	1184
BstBI	TTCGAA	2 cut(s)	132, 755
BstC8I	GCNNGC	3 cut(s)	221, 255, 659
BstDEI	CTNAG	3 cut(s)	441, 513, 597
BstDSI	CCRYGG	3 cut(s)	93, 241, 1080
BstF5I	GGATG	3 cut(s)	143, 155, 1042
BstFNI	CGCG	2 cut(s)	353, 1082
BstMAI	GTCTC	1 cut(s)	632
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 313, 1187
BstSCI	CCNGG	1 cut(s)	741
BstUI	CGCG	2 cut(s)	353, 1082
BstX2I	RGATCY	3 cut(s)	28, 464, 1027
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstYI	RGATCY	3 cut(s)	28, 464, 1027
BtgI	CCRYGG	3 cut(s)	93, 241, 1080
BtsCI	GGATG	3 cut(s)	143, 155, 1042
BtsIMutI	CAGTG	1 cut(s)	78
BtuMI	TCGCGA	1 cut(s)	353
Cac8I	GCNNGC	3 cut(s)	221, 255, 659
CciI	TCATGA	1 cut(s)	382
Cfr42I	CCGCGG	1 cut(s)	1083
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	427, 1018, 1215
CviAII	CATG	3 cut(s)	94, 249, 383
CviQI	GTAC	3 cut(s)	427, 1018, 1215
DdeI	CTNAG	3 cut(s)	441, 513, 597
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	289
Eco32I	GATATC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	287
Eco72I	CACGTG	1 cut(s)	1184
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	962
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	97, 252, 386
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	3 cut(s)	93, 248, 382
FbaI	TGATCA	1 cut(s)	720
Fnu4HI	GCNGC	1 cut(s)	1083
FokI	GGATG	3 cut(s)	130, 142, 1049
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	1083
FspBI	CTAG	2 cut(s)	662, 761
GluI	GCNGC	1 cut(s)	1083
HapII	CCGG	3 cut(s)	32, 176, 743
HgaI	GACGC	1 cut(s)	424
Hin1II	CATG	3 cut(s)	97, 252, 386
HincII	GTYRAC	2 cut(s)	105, 994
HindII	GTYRAC	2 cut(s)	105, 994
HindIII	AAGCTT	3 cut(s)	356, 375, 515
HinfI	GANTC	9 cut(s)	11, 44, 83, 101, 183, 431, 579, 593, 1205
HpaII	CCGG	3 cut(s)	32, 176, 743
HphI	GGTGA	3 cut(s)	797, 1060, 1117
Hpy166II	GTNNAC	3 cut(s)	6, 105, 994
Hpy188I	TCNGA	8 cut(s)	49, 370, 459, 584, 600, 774, 979, 1036
Hpy8I	GTNNAC	3 cut(s)	6, 105, 994
Hpy99I	CGWCG	5 cut(s)	127, 164, 200, 366, 413
HpyAV	CCTTC	4 cut(s)	527, 706, 788, 833
HpyCH4III	ACNGT	1 cut(s)	873
HpyCH4IV	ACGT	3 cut(s)	809, 1163, 1183
HpyCH4V	TGCA	6 cut(s)	113, 400, 778, 960, 1061, 1181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 313, 1187
HpyF3I	CTNAG	3 cut(s)	441, 513, 597
HpySE526I	ACGT	3 cut(s)	809, 1163, 1183
Hsp92II	CATG	3 cut(s)	97, 252, 386
Kpn2I	TCCGGA	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	720
KspI	CCGCGG	1 cut(s)	1083
LmnI	GCTCC	4 cut(s)	228, 371, 797, 1195
LweI	GCATC	4 cut(s)	100, 325, 765, 1027
MaeI	CTAG	2 cut(s)	662, 761
MaeII	ACGT	3 cut(s)	809, 1163, 1183
MaeIII	GTNAC	2 cut(s)	151, 677
MboII	GAAGA	4 cut(s)	280, 283, 640, 838
MfeI	CAATTG	1 cut(s)	1171
MflI	RGATCY	3 cut(s)	28, 464, 1027
MhlI	GDGCHC	1 cut(s)	289
MlyI	GAGTC	2 cut(s)	20, 110
MnlI	CCTC	8 cut(s)	82, 85, 151, 272, 305, 308, 318, 455
Mph1103I	ATGCAT	1 cut(s)	962
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	6 cut(s)	203, 390, 1044, 1140, 1155, 1166
MslI	CAYNNNNRTG	2 cut(s)	92, 1149
MspA1I	CMGCKG	1 cut(s)	1082
MspI	CCGG	3 cut(s)	32, 176, 743
MspR9I	CCNGG	1 cut(s)	743
MunI	CAATTG	1 cut(s)	1171
Mva1269I	GAATGC	1 cut(s)	128
MvnI	CGCG	2 cut(s)	353, 1082
MwoI	GCNNNNNNNGC	3 cut(s)	229, 313, 1187
NciI	CCSGG	1 cut(s)	743
NcoI	CCATGG	1 cut(s)	93
NlaIII	CATG	3 cut(s)	97, 252, 386
NlaIV	GGNNCC	3 cut(s)	30, 120, 474
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	151, 677
NruI	TCGCGA	1 cut(s)	353
NsiI	ATGCAT	1 cut(s)	962
NspV	TTCGAA	2 cut(s)	132, 755
PaeR7I	CTCGAG	1 cut(s)	263
PagI	TCATGA	1 cut(s)	382
PctI	GAATGC	1 cut(s)	128
PfeI	GAWTC	7 cut(s)	44, 83, 183, 431, 579, 593, 1205
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	1084
PleI	GAGTC	2 cut(s)	19, 109
PmaCI	CACGTG	1 cut(s)	1184
PmlI	CACGTG	1 cut(s)	1184
PpsI	GAGTC	2 cut(s)	19, 109
Ppu21I	YACGTR	1 cut(s)	1184
Psp124BI	GAGCTC	1 cut(s)	289
PspCI	CACGTG	1 cut(s)	1184
PspN4I	GGNNCC	3 cut(s)	30, 120, 474
PsrI	GAACNNNNNNTAC	2 cut(s)	419, 451
PsuI	RGATCY	3 cut(s)	28, 464, 1027
RruI	TCGCGA	1 cut(s)	353
RsaI	GTAC	3 cut(s)	428, 1019, 1216
RsaNI	GTAC	3 cut(s)	427, 1018, 1215
RseI	CAYNNNNRTG	2 cut(s)	92, 1149
SacI	GAGCTC	1 cut(s)	289
SacII	CCGCGG	1 cut(s)	1083
SaqAI	TTAA	6 cut(s)	203, 390, 1044, 1140, 1155, 1166
SatI	GCNGC	1 cut(s)	1083
SchI	GAGTC	2 cut(s)	20, 110
ScrFI	CCNGG	1 cut(s)	743
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	4 cut(s)	100, 325, 765, 1027
Sfr274I	CTCGAG	1 cut(s)	263
Sfr303I	CCGCGG	1 cut(s)	1083
SfuI	TTCGAA	2 cut(s)	132, 755
SgrBI	CCGCGG	1 cut(s)	1083
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	92, 1149
SmlI	CTYRAG	3 cut(s)	263, 276, 1021
SmoI	CTYRAG	3 cut(s)	263, 276, 1021
SsiI	CCGC	4 cut(s)	90, 1080, 1082, 1159
SspMI	CTAG	2 cut(s)	662, 761
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	741
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	873
TaiI	ACGT	3 cut(s)	812, 1166, 1186
TaqI	TCGA	8 cut(s)	132, 195, 236, 264, 408, 571, 577, 755
TatI	WGTACW	1 cut(s)	1017
TauI	GCSGC	1 cut(s)	1085
TfiI	GAWTC	7 cut(s)	44, 83, 183, 431, 579, 593, 1205
Tru1I	TTAA	6 cut(s)	203, 390, 1044, 1140, 1155, 1166
Tru9I	TTAA	6 cut(s)	203, 390, 1044, 1140, 1155, 1166
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	2 cut(s)	151, 677
Tsp45I	GTSAC	2 cut(s)	151, 677
TspDTI	ATGAA	6 cut(s)	387, 659, 665, 725, 852, 1197
TspGWI	ACGGA	3 cut(s)	23, 148, 723
TspRI	CASTG	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	343
XapI	RAATTY	3 cut(s)	62, 686, 1108
XhoI	CTCGAG	1 cut(s)	263
XspI	CTAG	2 cut(s)	662, 761
Zsp2I	ATGCAT	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.