Prupe.3G102100_v2.0.a1

Trafficking protein particle complex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
7927347 .. 7929416
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G102100.1

Sequence Viewer

Length: 1197 bp
ATGGATTCCGATACACCTGATTCCCAAACCGTAACCACCGAAACACCTCATCCCCAAACCGTAACCACCGAGACACCTGATTCCCAAACCGTAACCACCGACATACCTGATCCCCAAACCGTAACGACTGACCTGGAAACCCTAACCCTCTCCAACGATCCATTGACAGACCAGTTCGGCTCCCTCAATGACGTGGCCCATGAGCTCGCCTCCCTCCAGGACCTTGCCACGCGCGGCTCATGGCGCTCCATCCTAGACAAGGTGGCCCGGGCTCGAGCCCAATCTCTCCTCCACAAACCCCACGACCACCTCGTTTATTTCACCTACAATGTGCTTGCCTTGACTAAACTACGCAGGTTCCTCGAAGCCGCTGCCGAGATCGATTCCTTAGAGGACCTCGACAGCCCTCGCTACCAGTACGAGTCGTATCCAAAAGTGTACCCAAACCGGGTTGGGTCCATGGTACCCTTCTCCCTCCGGTGGCTTTATGCCTTAATGCCCATCAAGTTGGGCCAGCGACAAGATGGTCTGGACCGGCTCTACTGCTTGTTAGATTTTGTACGGAGCAAAATAAAAGAAAAACAAAAAAATGGGAGTGTTTCTGTGTGGAAGAGAAGGGAGGTGTTTGTAATGAATGGTATAATTGGGGTCCATTTGAGCAACAAGGAGGTATCTGTGTGCTTGAGCTTGATCAATGACTTGCTTAACCGTGATTACACAGATCCAGTTTTGGTGTCGAAACTAGGGTACATTCAGATGCAAATGGGAGACTTAGAAGGAGCTAAGAGCTCCTTCAACGTGGTCCAAGGATTGGTGGAGAATGAGGGTGAAGCGAGCAACGAGTTGAAGAACATAGTAAGTAGGAACAAGGCCTTGGTGTACATGGTGGGGAAGGACTATGTGTCTGCAGTGAGGGAGTATGAGGAGTGCATTGAGAGGGAGCATAACGACATTGTGGCCATCAACAATAAGGCACTTTGCTTGATGTACTTGCGGGACCTGTCAGATTCAATCAAAGTGTTGGAGAATGCTCTGGAAAGAGTGCCTACGGTGGCATTGAATGAAACCGTTGTGGTGAATTTGTGTAGTATGTACGAGTTGGCTTACGTTAATCATTCTGATATTAAGAGGACACTGAATAGCTGGATTGCCAGGGTTGCTCCTGATGATTTTGATTCATCATCTACGAGGATTTGA

Protein Analysis

399

Amino Acids

44.99

Weight (kDa)

5.11

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 525
Acc36I ACCTGC 1 cut(s) 345
Acc65I GGTACC 1 cut(s) 463
AccB1I GGYRCC 1 cut(s) 463
AccB7I CCANNNNNTGG 1 cut(s) 811
AccII CGCG 2 cut(s) 232, 234
AciI CCGC 3 cut(s) 234, 369, 994
AclWI GGATC 3 cut(s) 104, 152, 716
AcoI YGGCCR 1 cut(s) 957
AcsI RAATTY 1 cut(s) 1078
AfaI GTAC 8 cut(s) 419, 440, 465, 561, 749, 881, 989, 1094
AfiI CCNNNNNNNGG 4 cut(s) 259, 448, 480, 811
AgsI TTSAA 4 cut(s) 796, 847, 1011, 1060
AhdI GACNNNNNGTC 1 cut(s) 901
AjiI CACGTC 1 cut(s) 193
AjnI CCWGG 3 cut(s) 132, 216, 1151
AjuI GAANNNNNNNTTGG 2 cut(s) 857, 889
AluBI AGCT 5 cut(s) 205, 687, 782, 789, 1143
AluI AGCT 5 cut(s) 205, 687, 782, 789, 1143
Alw21I GWGCWC 2 cut(s) 207, 791
Alw26I GTCTC 2 cut(s) 65, 762
AlwI GGATC 3 cut(s) 104, 152, 716
Ama87I CYCGRG 2 cut(s) 267, 273
AoxI GGCC 5 cut(s) 195, 264, 511, 870, 957
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 1078
Asp718I GGTACC 1 cut(s) 463
AspLEI GCGC 2 cut(s) 234, 246
AsuC2I CCSGG 3 cut(s) 268, 269, 449
AsuHPI GGTGA 3 cut(s) 313, 839, 1087
AvaI CYCGRG 2 cut(s) 267, 273
AvaII GGWCC 7 cut(s) 220, 394, 456, 532, 649, 802, 997
BalI TGGCCA 1 cut(s) 959
BanI GGYRCC 1 cut(s) 463
BanII GRGCYC 4 cut(s) 207, 274, 280, 791
Bbv12I GWGCWC 2 cut(s) 207, 791
BbvI GCAGC 1 cut(s) 358
BccI CCATC 4 cut(s) 257, 509, 518, 968
BcgI CGANNNNNNTGC 4 cut(s) 343, 353, 377, 387
BciT130I CCWGG 3 cut(s) 134, 218, 1153
BciVI GTATCC 1 cut(s) 438
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 3 cut(s) 268, 269, 449
BcoDI GTCTC 2 cut(s) 65, 762
BfaI CTAG 2 cut(s) 254, 743
BfmI CTRYAG 1 cut(s) 906
BfoI RGCGCY 1 cut(s) 247
BfuAI ACCTGC 1 cut(s) 345
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 3 cut(s) 235, 369, 372
BlsI GCNGC 3 cut(s) 236, 370, 373
Bme1390I CCNGG 6 cut(s) 134, 218, 268, 269, 449, 1153
Bme18I GGWCC 7 cut(s) 220, 394, 456, 532, 649, 802, 997
BmeRI GACNNNNNGTC 1 cut(s) 901
BmeT110I CYCGRG 2 cut(s) 267, 273
BmgBI CACGTC 1 cut(s) 193
BmiI GGNNCC 6 cut(s) 181, 359, 457, 465, 650, 998
BmrFI CCNGG 6 cut(s) 134, 218, 268, 269, 449, 1153
BmsI GCATC 1 cut(s) 747
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 703
BpuMI CCSGG 3 cut(s) 268, 269, 449
Bsa29I ATCGAT 1 cut(s) 381
BsaJI CCNNGG 5 cut(s) 267, 459, 805, 873, 1152
BsaWI WCCGGW 1 cut(s) 477
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 448, 480, 811
Bse118I RCCGGY 1 cut(s) 534
Bse1I ACTGG 3 cut(s) 172, 415, 725
BseBI CCWGG 3 cut(s) 134, 218, 1153
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 5 cut(s) 267, 459, 805, 873, 1152
BseGI GGATG 2 cut(s) 49, 249
BseLI CCNNNNNNNGG 4 cut(s) 259, 448, 480, 811
BseNI ACTGG 3 cut(s) 172, 415, 725
BseRI GAGGAG 2 cut(s) 278, 938
BseXI GCAGC 1 cut(s) 358
Bsh1236I CGCG 2 cut(s) 232, 234
BshFI GGCC 5 cut(s) 197, 266, 513, 872, 959
BshNI GGYRCC 1 cut(s) 463
BshVI ATCGAT 1 cut(s) 381
BsiHKAI GWGCWC 2 cut(s) 207, 791
BsiHKCI CYCGRG 2 cut(s) 267, 273
BsiSI CCGG 4 cut(s) 268, 448, 478, 535
BslFI GGGAC 1 cut(s) 1010
BslI CCNNNNNNNGG 4 cut(s) 259, 448, 480, 811
BsmAI GTCTC 2 cut(s) 65, 762
BsmFI GGGAC 1 cut(s) 1010
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 5 cut(s) 197, 266, 513, 872, 959
BsoBI CYCGRG 2 cut(s) 267, 273
Bsp1286I GDGCHC 4 cut(s) 207, 274, 280, 791
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 5 cut(s) 109, 157, 378, 690, 721
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 3 cut(s) 234, 369, 994
BspANI GGCC 5 cut(s) 197, 266, 513, 872, 959
BspDI ATCGAT 1 cut(s) 381
BspFNI CGCG 2 cut(s) 232, 234
BspLI GGNNCC 6 cut(s) 181, 359, 457, 465, 650, 998
BspMAI CTGCAG 1 cut(s) 910
BspMI ACCTGC 1 cut(s) 345
BspPI GGATC 3 cut(s) 104, 152, 716
BspT107I GGYRCC 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 534
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 3 cut(s) 172, 415, 725
BssAI RCCGGY 1 cut(s) 534
BssECI CCNNGG 5 cut(s) 267, 459, 805, 873, 1152
BssMI GATC 5 cut(s) 109, 157, 378, 690, 721
BssT1I CCWWGG 3 cut(s) 459, 805, 873
Bst2UI CCWGG 3 cut(s) 134, 218, 1153
Bst4CI ACNGT 7 cut(s) 31, 61, 91, 121, 710, 1051, 1069
Bst6I CTCTTC 1 cut(s) 605
BstAUI TGTACA 1 cut(s) 879
BstC8I GCNNGC 4 cut(s) 207, 336, 515, 835
BstDEI CTNAG 3 cut(s) 388, 772, 783
BstDSI CCRYGG 1 cut(s) 459
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 49, 249
BstFNI CGCG 2 cut(s) 232, 234
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 2 cut(s) 234, 246
BstKTI GATC 5 cut(s) 112, 160, 381, 693, 724
BstMAI GTCTC 2 cut(s) 65, 762
BstMBI GATC 5 cut(s) 109, 157, 378, 690, 721
BstMWI GCNNNNNNNGC 2 cut(s) 243, 1157
BstNI CCWGG 3 cut(s) 134, 218, 1153
BstSCI CCNGG 6 cut(s) 132, 216, 266, 267, 447, 1151
BstSFI CTRYAG 1 cut(s) 906
BstUI CGCG 2 cut(s) 232, 234
BstV1I GCAGC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 721
BstXI CCANNNNNNTGG 1 cut(s) 508
BstYI RGATCY 1 cut(s) 721
Bsu15I ATCGAT 1 cut(s) 381
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 5 cut(s) 197, 266, 513, 872, 959
BsuTUI ATCGAT 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 459
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 2 cut(s) 49, 249
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 2 cut(s) 915, 1133
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 4 cut(s) 207, 336, 515, 835
CfoI GCGC 2 cut(s) 234, 246
Cfr10I RCCGGY 1 cut(s) 534
Cfr9I CCCGGG 1 cut(s) 267
ClaI ATCGAT 1 cut(s) 381
Csp6I GTAC 8 cut(s) 418, 439, 464, 560, 748, 880, 988, 1093
CviAII CATG 4 cut(s) 200, 240, 460, 883
CviQI GTAC 8 cut(s) 418, 439, 464, 560, 748, 880, 988, 1093
DdeI CTNAG 3 cut(s) 388, 772, 783
DpnI GATC 5 cut(s) 111, 159, 380, 692, 723
DpnII GATC 5 cut(s) 109, 157, 378, 690, 721
DrdI GACNNNNNNGTC 1 cut(s) 525
DriI GACNNNNNGTC 1 cut(s) 901
DseDI GACNNNNNNGTC 1 cut(s) 525
EaeI YGGCCR 1 cut(s) 957
Eam1104I CTCTTC 1 cut(s) 605
Eam1105I GACNNNNNGTC 1 cut(s) 901
EarI CTCTTC 1 cut(s) 605
Ecl136II GAGCTC 2 cut(s) 205, 789
Eco130I CCWWGG 3 cut(s) 459, 805, 873
Eco147I AGGCCT 1 cut(s) 872
Eco24I GRGCYC 4 cut(s) 207, 274, 280, 791
Eco47I GGWCC 7 cut(s) 220, 394, 456, 532, 649, 802, 997
Eco53kI GAGCTC 2 cut(s) 205, 789
Eco88I CYCGRG 2 cut(s) 267, 273
EcoICRI GAGCTC 2 cut(s) 205, 789
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 3 cut(s) 220, 394, 997
EcoRII CCWGG 3 cut(s) 132, 216, 1151
EcoT14I CCWWGG 3 cut(s) 459, 805, 873
EcoT38I GRGCYC 4 cut(s) 207, 274, 280, 791
ErhI CCWWGG 3 cut(s) 459, 805, 873
FaeI CATG 4 cut(s) 203, 243, 463, 886
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 1 cut(s) 1010
FatI CATG 4 cut(s) 199, 239, 459, 882
FauI CCCGC 1 cut(s) 987
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 3 cut(s) 235, 369, 372
FokI GGATG 2 cut(s) 36, 236
FriOI GRGCYC 4 cut(s) 207, 274, 280, 791
Fsp4HI GCNGC 3 cut(s) 235, 369, 372
FspBI CTAG 2 cut(s) 254, 743
GlaI GCGC 2 cut(s) 233, 245
GluI GCNGC 3 cut(s) 235, 369, 372
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 5 cut(s) 197, 266, 513, 872, 959
HapII CCGG 4 cut(s) 268, 448, 478, 535
HhaI GCGC 2 cut(s) 234, 246
Hin1II CATG 4 cut(s) 203, 243, 463, 886
Hin6I GCGC 2 cut(s) 232, 244
HinP1I GCGC 2 cut(s) 232, 244
HinfI GANTC 7 cut(s) 5, 20, 80, 383, 422, 1007, 1175
HpaII CCGG 4 cut(s) 268, 448, 478, 535
HphI GGTGA 3 cut(s) 313, 839, 1087
Hpy166II GTNNAC 2 cut(s) 439, 880
Hpy188I TCNGA 4 cut(s) 10, 756, 1006, 1120
Hpy188III TCNNGA 3 cut(s) 530, 1034, 1163
Hpy8I GTNNAC 2 cut(s) 439, 880
HpyAV CCTTC 5 cut(s) 478, 609, 770, 802, 886
HpyCH4III ACNGT 7 cut(s) 31, 61, 91, 121, 710, 1051, 1069
HpyCH4IV ACGT 3 cut(s) 192, 798, 1107
HpyCH4V TGCA 3 cut(s) 760, 908, 930
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 1157
HpyF3I CTNAG 3 cut(s) 388, 772, 783
HpySE526I ACGT 3 cut(s) 192, 798, 1107
Hsp92II CATG 4 cut(s) 203, 243, 463, 886
HspAI GCGC 2 cut(s) 232, 244
KpnI GGTACC 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 5 cut(s) 109, 157, 378, 690, 721
LmnI GCTCC 7 cut(s) 185, 251, 564, 779, 794, 940, 1165
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 747
MaeI CTAG 2 cut(s) 254, 743
MaeII ACGT 3 cut(s) 192, 798, 1107
MaeIII GTNAC 4 cut(s) 31, 61, 91, 121
MalI GATC 5 cut(s) 111, 159, 380, 692, 723
MboI GATC 5 cut(s) 109, 157, 378, 690, 721
MboII GAAGA 2 cut(s) 622, 859
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 4 cut(s) 207, 274, 280, 791
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 2 cut(s) 642, 1078
MluNI TGGCCA 1 cut(s) 959
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 177, 1002
Mox20I TGGCCA 1 cut(s) 959
MscI TGGCCA 1 cut(s) 959
MseI TTAA 4 cut(s) 494, 705, 1110, 1125
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 959
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 4 cut(s) 268, 448, 478, 535
MspR9I CCNGG 6 cut(s) 134, 218, 268, 269, 449, 1153
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 3 cut(s) 134, 218, 1153
MvnI CGCG 2 cut(s) 232, 234
MwoI GCNNNNNNNGC 2 cut(s) 243, 1157
NciI CCSGG 3 cut(s) 268, 269, 449
NcoI CCATGG 1 cut(s) 459
NdeII GATC 5 cut(s) 109, 157, 378, 690, 721
NlaIII CATG 4 cut(s) 203, 243, 463, 886
NlaIV GGNNCC 6 cut(s) 181, 359, 457, 465, 650, 998
NmeAIII GCCGAG 1 cut(s) 400
PaeR7I CTCGAG 1 cut(s) 273
PceI AGGCCT 1 cut(s) 872
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 6 cut(s) 5, 20, 80, 383, 1007, 1175
PflMI CCANNNNNTGG 1 cut(s) 811
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 3 cut(s) 236, 370, 373
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PpuMI RGGWCCY 3 cut(s) 220, 394, 997
Psp124BI GAGCTC 2 cut(s) 207, 791
Psp5II RGGWCCY 3 cut(s) 220, 394, 997
Psp6I CCWGG 3 cut(s) 132, 216, 1151
PspGI CCWGG 3 cut(s) 132, 216, 1151
PspN4I GGNNCC 6 cut(s) 181, 359, 457, 465, 650, 998
PspPPI RGGWCCY 3 cut(s) 220, 394, 997
PspXI VCTCGAGB 1 cut(s) 273
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 1 cut(s) 721
RsaI GTAC 8 cut(s) 419, 440, 465, 561, 749, 881, 989, 1094
RsaNI GTAC 8 cut(s) 418, 439, 464, 560, 748, 880, 988, 1093
RseI CAYNNNNRTG 1 cut(s) 755
SacI GAGCTC 2 cut(s) 207, 791
SaqAI TTAA 4 cut(s) 494, 705, 1110, 1125
SatI GCNGC 3 cut(s) 235, 369, 372
Sau3AI GATC 5 cut(s) 109, 157, 378, 690, 721
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 6 cut(s) 134, 218, 268, 269, 449, 1153
SduI GDGCHC 4 cut(s) 207, 274, 280, 791
SfaNI GCATC 1 cut(s) 747
SfcI CTRYAG 1 cut(s) 906
Sfr274I CTCGAG 1 cut(s) 273
SinI GGWCC 7 cut(s) 220, 394, 456, 532, 649, 802, 997
SlaI CTCGAG 1 cut(s) 273
SmaI CCCGGG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 2 cut(s) 273, 682
SmoI CTYRAG 2 cut(s) 273, 682
SrfI GCCCGGGC 1 cut(s) 269
Sse9I AATT 2 cut(s) 642, 1078
SseBI AGGCCT 1 cut(s) 872
SsiI CCGC 3 cut(s) 234, 369, 994
SspMI CTAG 2 cut(s) 254, 743
SstI GAGCTC 2 cut(s) 207, 791
StuI AGGCCT 1 cut(s) 872
StyD4I CCNGG 6 cut(s) 132, 216, 266, 267, 447, 1151
StyI CCWWGG 3 cut(s) 459, 805, 873
TaaI ACNGT 7 cut(s) 31, 61, 91, 121, 710, 1051, 1069
TaiI ACGT 3 cut(s) 195, 801, 1110
TaqI TCGA 5 cut(s) 274, 363, 381, 399, 737
TasI AATT 2 cut(s) 642, 1078
TatI WGTACW 2 cut(s) 879, 987
TauI GCSGC 2 cut(s) 237, 371
TfiI GAWTC 6 cut(s) 5, 20, 80, 383, 1007, 1175
Tru1I TTAA 4 cut(s) 494, 705, 1110, 1125
Tru9I TTAA 4 cut(s) 494, 705, 1110, 1125
TscAI CASTG 2 cut(s) 915, 1140
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 647, 1077, 1167
TspGWI ACGGA 1 cut(s) 577
TspMI CCCGGG 1 cut(s) 267
TspRI CASTG 2 cut(s) 915, 1140
Van91I CCANNNNNTGG 1 cut(s) 811
VpaK11BI GGWCC 7 cut(s) 220, 394, 456, 532, 649, 802, 997
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 1078
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
XhoI CTCGAG 1 cut(s) 273
XmaI CCCGGG 1 cut(s) 267
XspI CTAG 2 cut(s) 254, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.