Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012272

Physical Location & Seq

Genomic Coordinates Forward (+)

64983264 .. 64984350

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGACCCAGCCGCACCCGAATCCCAATCCCTAACCCTCTCGACCGATCCCCTAAGCGACCAGTTCTCCTCCCTCAACGACCTCGCCCACGAGCTCGCCTCCCTCCAGGACCTCGCCACCCGCGGCTCCTGGCGCTCCATTCTCGACAAGGATGGGCTGGACCGGCTGTACGTGCTCTTGGACTTTGTGAGGAGTAAGGTGAAGGAGAAAGGAGAAATTGGGAGTGTGAGTGTGTGGAAGAGGAGGGAGGTGTTTGTGATGAATGGGATAATTGGGGTTCATTTGAATCAGAAGGAGTTGGCTGCTTGCTTCAGCTTGATTAAGGACTTGTTGGACCGGGATTACACGGACCCGGTTCTGGTTTCGAAGCTCGGGTACATTCAGATGCAAATGGGGGACCTAGAGGGAGCTAAGAGCTCGTTCAATGTGGTGCAGGGGTTGGTGGATAAGGAAGGTGAAGTGGGAAGTGAGTTGAGGAACTTAGTGAGCAGGAACAAGGCGTTGATTTACATGGTGGGGAAGGACTATGTGTCGGCGGTGAGGGAGTATGAGGAGTGCATTGAGAGGGATGGGAGCGACGTCGTGGCAATTAATAACAAGTCTCTTTGCTTGATGTACTTGAGGGACTTGTCGGATTCGATCAAGGTGTTGGAGAATGCGCTGGAGAGAGTACCTACGGTGGCGTTGAACGAGACGCTTGTGGTGAATTTGTGTAGTATGTATGAGCTGGCTTATGTTAATCATGGGGATATTAAGAGGACGCTCAGTAGCTGGATTGCCAGGGTTGCTCCTGATGATTTTGATTCGGCTTCTACAAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0003824 GO:0004175 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0006810 GO:0006888 GO:0006996 GO:0007030 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010256 GO:0016043 GO:0016192 GO:0016787 GO:0017016 GO:0017112 GO:0017137 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030008 GO:0031267 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048518 GO:0050000 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065009 GO:0070011 GO:0071704 GO:0071840 GO:0090230 GO:0090234 GO:0098687 GO:0098772 GO:0098813 GO:0099023 GO:0140096 GO:1901564 GO:1902115 GO:1903827 GO:1903829 GO:1905340 GO:1905342

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

274

Amino Acids

30.56

Weight (kDa)

4.87

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39820 AT4G39820
fragaria_vesca	FvH4_1g21530
prunus_persica	Prupe.3G102100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115391
rosa_laevigata	RLG00000018182
rosa_multiflora	Rmu_co8054726.1_g000001 Rmu_co8464345.1_g000001 Rmu_sc0001897.1_g000010 Rmu_sc0005767.1_g000004
rosa_roxburghii	Rroxscaffold_2G00128350 Rroxscaffold_2G00129130
rosa_rugosa	Rorug02G0196400 Rorug02G0196500
rosa_samantha	Rh2AG254500 Rh2BG264600 Rh2CG259100 Rh2DG262600
rosa_wichuraiana	Rw2G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	582
AccII	CGCG	1 cut(s)	123
AciI	CCGC	4 cut(s)	12, 121, 123, 536
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	706
AcuI	CTGAAG	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	579
AfaI	GTAC	4 cut(s)	170, 377, 617, 672
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	286, 424, 688
AhdI	GACNNNNNGTC	1 cut(s)	529
AjnI	CCWGG	3 cut(s)	105, 128, 779
AluBI	AGCT	7 cut(s)	94, 315, 370, 410, 417, 727, 771
AluI	AGCT	7 cut(s)	94, 315, 370, 410, 417, 727, 771
Alw21I	GWGCWC	3 cut(s)	96, 177, 419
Alw26I	GTCTC	2 cut(s)	606, 686
AlwI	GGATC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	771
Ama87I	CYCGRG	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	706
AseI	ATTAAT	1 cut(s)	591
AspLEI	GCGC	2 cut(s)	135, 661
AspS9I	GGNCC	6 cut(s)	4, 109, 160, 334, 349, 397
AsuC2I	CCSGG	2 cut(s)	338, 353
AsuHPI	GGTGA	4 cut(s)	211, 467, 550, 715
AsuII	TTCGAA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	6 cut(s)	4, 109, 160, 334, 349, 397
BanII	GRGCYC	2 cut(s)	96, 419
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BauI	CACGAG	1 cut(s)	89
Bbv12I	GWGCWC	3 cut(s)	96, 177, 419
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	146, 563
BciT130I	CCWGG	3 cut(s)	107, 130, 781
BcnI	CCSGG	2 cut(s)	338, 353
BcoDI	GTCTC	2 cut(s)	606, 686
BfaI	CTAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	136
BisI	GCNGC	3 cut(s)	12, 124, 303
BlsI	GCNGC	3 cut(s)	13, 125, 304
Bme1390I	CCNGG	5 cut(s)	107, 130, 338, 353, 781
Bme18I	GGWCC	6 cut(s)	4, 109, 160, 334, 349, 397
BmeRI	GACNNNNNGTC	1 cut(s)	529
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	6 cut(s)	4, 109, 160, 334, 349, 397
BmiI	GGNNCC	4 cut(s)	6, 127, 351, 398
BmrFI	CCNGG	5 cut(s)	107, 130, 338, 353, 781
BmsI	GCATC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	89, 683
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	640
BpuMI	CCSGG	2 cut(s)	338, 353
BsaAI	YACGTR	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	121, 780
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	61
BseBI	CCWGG	3 cut(s)	107, 130, 781
BseDI	CCNNGG	2 cut(s)	121, 780
BseGI	GGATG	2 cut(s)	157, 574
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	778
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	4 cut(s)	58, 205, 256, 566
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	7
BsgI	GTGCAG	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	3 cut(s)	96, 177, 419
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	163, 337, 353
BslFI	GGGAC	2 cut(s)	410, 638
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	606, 686
BsmBI	CGTCTC	1 cut(s)	686
BsmFI	GGGAC	2 cut(s)	410, 638
BsmI	GAATGC	1 cut(s)	661
BsoBI	CYCGRG	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	365
Bsp1286I	GDGCHC	3 cut(s)	96, 177, 419
Bsp143I	GATC	2 cut(s)	46, 639
BspACI	CCGC	4 cut(s)	12, 121, 123, 536
BspCNI	CTCAG	1 cut(s)	777
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	6, 127, 351, 398
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	121, 780
BssMI	GATC	2 cut(s)	46, 639
BssNI	GRCGYC	1 cut(s)	579
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	3 cut(s)	107, 130, 781
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	579
BstBAI	YACGTR	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	96, 307, 729
BstDEI	CTNAG	4 cut(s)	53, 411, 481, 764
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	157, 574
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 661
BstKTI	GATC	2 cut(s)	49, 642
BstMAI	GTCTC	2 cut(s)	606, 686
BstMBI	GATC	2 cut(s)	46, 639
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 163, 172, 785
BstNI	CCWGG	3 cut(s)	107, 130, 781
BstSCI	CCNGG	5 cut(s)	105, 128, 336, 351, 779
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	157, 574
Cac8I	GCNNGC	3 cut(s)	96, 307, 729
CaiI	CAGNNNCTG	1 cut(s)	771
CfoI	GCGC	2 cut(s)	135, 661
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	6 cut(s)	4, 109, 160, 334, 349, 397
Cfr42I	CCGCGG	1 cut(s)	124
CseI	GACGC	2 cut(s)	703, 769
Csp6I	GTAC	4 cut(s)	169, 376, 616, 671
CviAII	CATG	2 cut(s)	511, 743
CviQI	GTAC	4 cut(s)	169, 376, 616, 671
DdeI	CTNAG	4 cut(s)	53, 411, 481, 764
DpnI	GATC	2 cut(s)	48, 641
DpnII	GATC	2 cut(s)	46, 639
DriI	GACNNNNNGTC	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	233
Eam1105I	GACNNNNNGTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	233
Ecl136II	GAGCTC	2 cut(s)	94, 417
Eco24I	GRGCYC	2 cut(s)	96, 419
Eco47I	GGWCC	6 cut(s)	4, 109, 160, 334, 349, 397
Eco53kI	GAGCTC	2 cut(s)	94, 417
Eco57I	CTGAAG	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	371
EcoICRI	GAGCTC	2 cut(s)	94, 417
EcoO109I	RGGNCCY	2 cut(s)	109, 397
EcoRII	CCWGG	3 cut(s)	105, 128, 779
EcoT38I	GRGCYC	2 cut(s)	96, 419
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	2 cut(s)	514, 746
FaiI	YATR	7 cut(s)	512, 528, 549, 719, 723, 735, 744
FaqI	GGGAC	2 cut(s)	410, 638
FatI	CATG	2 cut(s)	510, 742
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	3 cut(s)	12, 124, 303
FokI	GGATG	2 cut(s)	164, 581
FriOI	GRGCYC	2 cut(s)	96, 419
Fsp4HI	GCNGC	3 cut(s)	12, 124, 303
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	134, 660
GluI	GCNGC	3 cut(s)	12, 124, 303
GsaI	CCCAGC	1 cut(s)	11
GsuI	CTGGAG	2 cut(s)	89, 683
HaeII	RGCGCY	1 cut(s)	136
HapII	CCGG	3 cut(s)	163, 337, 353
HgaI	GACGC	2 cut(s)	703, 769
HhaI	GCGC	2 cut(s)	135, 661
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	2 cut(s)	514, 746
Hin6I	GCGC	2 cut(s)	133, 659
HinP1I	GCGC	2 cut(s)	133, 659
HinfI	GANTC	4 cut(s)	20, 286, 635, 803
HpaII	CCGG	3 cut(s)	163, 337, 353
HphI	GGTGA	4 cut(s)	211, 467, 550, 715
Hpy188I	TCNGA	3 cut(s)	291, 384, 634
Hpy188III	TCNNGA	3 cut(s)	40, 143, 791
Hpy99I	CGWCG	2 cut(s)	581, 584
HpyAV	CCTTC	4 cut(s)	196, 286, 446, 514
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	2 cut(s)	171, 579
HpyCH4V	TGCA	3 cut(s)	388, 433, 558
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 163, 172, 785
HpyF3I	CTNAG	4 cut(s)	53, 411, 481, 764
HpySE526I	ACGT	2 cut(s)	171, 579
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	514, 746
HspAI	GCGC	2 cut(s)	133, 659
KspI	CCGCGG	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	46, 639
LmnI	GCTCC	5 cut(s)	131, 140, 407, 573, 793
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	2 cut(s)	171, 579
MalI	GATC	2 cut(s)	48, 641
MboI	GATC	2 cut(s)	46, 639
MboII	GAAGA	1 cut(s)	250
MhlI	GDGCHC	3 cut(s)	96, 177, 419
MluCI	AATT	4 cut(s)	216, 270, 588, 706
MmeI	TCCRAC	3 cut(s)	312, 612, 630
MseI	TTAA	4 cut(s)	321, 591, 738, 753
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	3 cut(s)	163, 337, 353
MspR9I	CCNGG	5 cut(s)	107, 130, 338, 353, 781
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	3 cut(s)	107, 130, 781
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	4 cut(s)	132, 163, 172, 785
NciI	CCSGG	2 cut(s)	338, 353
NdeII	GATC	2 cut(s)	46, 639
NlaIII	CATG	2 cut(s)	514, 746
NlaIV	GGNNCC	4 cut(s)	6, 127, 351, 398
NspV	TTCGAA	1 cut(s)	365
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	4 cut(s)	20, 286, 635, 803
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	13, 125, 304
Ppu21I	YACGTR	1 cut(s)	172
PpuMI	RGGWCCY	2 cut(s)	109, 397
PshBI	ATTAAT	1 cut(s)	591
Psp124BI	GAGCTC	2 cut(s)	96, 419
Psp5II	RGGWCCY	2 cut(s)	109, 397
Psp6I	CCWGG	3 cut(s)	105, 128, 779
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	3 cut(s)	105, 128, 779
PspN4I	GGNNCC	4 cut(s)	6, 127, 351, 398
PspPI	GGNCC	6 cut(s)	4, 109, 160, 334, 349, 397
PspPPI	RGGWCCY	2 cut(s)	109, 397
PstNI	CAGNNNCTG	1 cut(s)	771
RsaI	GTAC	4 cut(s)	170, 377, 617, 672
RsaNI	GTAC	4 cut(s)	169, 376, 616, 671
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	2 cut(s)	96, 419
SacII	CCGCGG	1 cut(s)	124
SaqAI	TTAA	4 cut(s)	321, 591, 738, 753
SatI	GCNGC	3 cut(s)	12, 124, 303
Sau3AI	GATC	2 cut(s)	46, 639
Sau96I	GGNCC	6 cut(s)	4, 109, 160, 334, 349, 397
ScrFI	CCNGG	5 cut(s)	107, 130, 338, 353, 781
SduI	GDGCHC	3 cut(s)	96, 177, 419
SfaNI	GCATC	1 cut(s)	375
Sfr303I	CCGCGG	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	365
SgrBI	CCGCGG	1 cut(s)	124
SinI	GGWCC	6 cut(s)	4, 109, 160, 334, 349, 397
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
Sse9I	AATT	4 cut(s)	216, 270, 588, 706
SsiI	CCGC	4 cut(s)	12, 121, 123, 536
SspMI	CTAG	1 cut(s)	401
SstI	GAGCTC	2 cut(s)	96, 419
StyD4I	CCNGG	5 cut(s)	105, 128, 336, 351, 779
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	2 cut(s)	174, 582
TaqI	TCGA	4 cut(s)	41, 144, 365, 638
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	4 cut(s)	216, 270, 588, 706
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	2 cut(s)	14, 126
TfiI	GAWTC	4 cut(s)	20, 286, 635, 803
Tru1I	TTAA	4 cut(s)	321, 591, 738, 753
Tru9I	TTAA	4 cut(s)	321, 591, 738, 753
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	269, 275
TspGWI	ACGGA	1 cut(s)	362
VpaK11BI	GGWCC	6 cut(s)	4, 109, 160, 334, 349, 397
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	1 cut(s)	706
XspI	CTAG	1 cut(s)	401
ZraI	GACGTC	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.