Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012272

Physical Location & Seq

Genomic Coordinates Forward (+)

18307644 .. 18309963

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0196400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGACAGGTCCAATGCTGTTGTTTTATTCAGGGAGAAAACACTATTGGAATTTCTACGATGTCATTAATAAGAAGGTCCTTAAGTTCCAAGCAAAAGTGCCATGGAAGCCACTTGTTGGATCTTCAAAAGGATGGCTAGTATTTGTGCATAGGAATGCTGAGGATAAAAATTTTGGTGTAACTTTAGTAAATCCTTTCTTCAGGATTAAAGGGAGGAAAAAGAAAGAAAATTCGCTCATTCGCCTGCCTCCACTAACTCCTCCGGGTTGGGAAGAATGGTATGCACATTGTGAGCGTTATGTCTCCAAGGCCACAATTTCAGCAGACCCAATATCAAATGCAAACGACTGCATTGTTACAGTCATACATTTGGAAAAAAAAACGTTGGCTTTGAGTAGATTGGTTAAAGATACGACATGGACTTATGTGGATGTAAGTGTTGATAATGCCCTTGTAGGCTGCCAGATGATTGAAGAAGTTGTTAACGTTGGAAATAAAGTTTATGCTGTGAATCTTTGGAGAGAAGTTTCATCTTTTGATGTTACTACTCGGACATACTCAGATGTAAAGTTGGTTGGACGCGGCGCTTTTCCAGATTCTCATGCTACCAAGAGATATATCTTTGAAGGAGAAGACAATAAATTGTTGATGGTCCAAAGGTACATGGAGTATAGCGAAGACAAACGAGTGACAAAGAAATTTAGAGTTTTTGAGTTGAATTTTCAAACGGGTGAATGGACTGAGAAGAACACCTTGGGTGGAGTTGCTCTCTTTGTCGGAGATAACTCTTCAATATGCGTGTTGGCTTCAAAAGTTTCCAGATTTCAGTCAAATTGCATATACTTCAACCATCATTGTGATTATGTGGGCGGTGGTGACGAATATGATTTTGGTGTTTATAACGTTGAAGATCAAAGCTTCCCAAAAACTTACACTAACCGTGTTAAGAATATCCTGCAGATGGAATATCCTGCAGATGAGTTCTCCACAACCGATTTGGGTTATGCAGACTTTGTCTTTTCCGTTGTAAAGAGCCTGTGCCACTTAAGTTCTTTCCATTGGATGAGGAGGAAGAAGACGAGTAAGACGCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0003824 GO:0004175 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0006810 GO:0006888 GO:0006996 GO:0007030 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010256 GO:0016043 GO:0016192 GO:0016787 GO:0017016 GO:0017112 GO:0017137 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030008 GO:0031267 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048518 GO:0050000 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065009 GO:0070011 GO:0071704 GO:0071840 GO:0090230 GO:0090234 GO:0098687 GO:0098772 GO:0098813 GO:0099023 GO:0140096 GO:1901564 GO:1902115 GO:1903827 GO:1903829 GO:1905340 GO:1905342

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

365

Amino Acids

42.15

Weight (kDa)

9.0

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	18 - 301	2.4e-43	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39820 AT4G39820
fragaria_vesca	FvH4_1g21530
prunus_persica	Prupe.3G102100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115391
rosa_laevigata	RLG00000018182
rosa_multiflora	Rmu_co8054726.1_g000001 Rmu_co8464345.1_g000001 Rmu_sc0001897.1_g000010 Rmu_sc0005767.1_g000004
rosa_roxburghii	Rroxscaffold_2G00128350 Rroxscaffold_2G00129130
rosa_rugosa	Rorug02G0196400 Rorug02G0196500
rosa_samantha	Rh2AG254500 Rh2BG264600 Rh2CG259100 Rh2DG262600
rosa_wichuraiana	Rw2G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	900
AccB7I	CCANNNNNTGG	1 cut(s)	116
AccII	CGCG	1 cut(s)	582
AciI	CCGC	2 cut(s)	582, 870
AclI	AACGTT	3 cut(s)	383, 486, 903
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	5 cut(s)	49, 169, 229, 698, 718
AcuI	CTGAAG	1 cut(s)	184
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	662
AfiI	CCNNNNNNNGG	2 cut(s)	116, 961
AflII	CTTAAG	2 cut(s)	80, 1045
AgsI	TTSAA	9 cut(s)	126, 473, 626, 718, 725, 792, 810, 847, 908
AjuI	GAANNNNNNNTTGG	6 cut(s)	28, 60, 737, 769, 873, 905
AluBI	AGCT	1 cut(s)	918
AluI	AGCT	1 cut(s)	918
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	459
ApoI	RAATTY	5 cut(s)	49, 169, 229, 698, 718
AseI	ATTAAT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	3 cut(s)	8, 76, 652
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	743, 887
AvaII	GGWCC	3 cut(s)	8, 76, 652
BbsI	GAAGAC	3 cut(s)	639, 684, 1082
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	4 cut(s)	126, 643, 858, 955
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	956, 972
BfoI	RGCGCY	1 cut(s)	588
BfrI	CTTAAG	2 cut(s)	80, 1045
BisI	GCNGC	2 cut(s)	460, 583
BlsI	GCNGC	2 cut(s)	461, 584
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	3 cut(s)	8, 76, 652
BmgT120I	GGNCC	3 cut(s)	8, 76, 652
BmrFI	CCNGG	1 cut(s)	264
BpiI	GAAGAC	3 cut(s)	639, 684, 1082
BplI	GAGNNNNNCTC	2 cut(s)	753, 785
Bpu10I	CCTNAGC	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	101, 306, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 961
BseDI	CCNNGG	3 cut(s)	101, 306, 753
BseGI	GGATG	3 cut(s)	137, 436, 1068
BseLI	CCNNNNNNNGG	2 cut(s)	116, 961
BseMII	CTCAG	3 cut(s)	150, 573, 732
BseRI	GAGGAG	2 cut(s)	249, 1081
BseXI	GCAGC	1 cut(s)	446
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	116, 961
BsmAI	GTCTC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	119, 910
Bsp19I	CCATGG	1 cut(s)	101
BspACI	CCGC	2 cut(s)	582, 870
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	3 cut(s)	151, 572, 733
BspFNI	CGCG	1 cut(s)	582
BspMAI	CTGCAG	2 cut(s)	960, 976
BspPI	GGATC	1 cut(s)	127
BspTI	CTTAAG	2 cut(s)	80, 1045
BssECI	CCNNGG	3 cut(s)	101, 306, 753
BssMI	GATC	2 cut(s)	119, 910
BssT1I	CCWWGG	3 cut(s)	101, 306, 753
Bst4CI	ACNGT	2 cut(s)	361, 941
Bst6I	CTCTTC	1 cut(s)	793
BstAFI	CTTAAG	2 cut(s)	80, 1045
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	159, 559, 741
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	3 cut(s)	137, 436, 1068
BstFNI	CGCG	1 cut(s)	582
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	2 cut(s)	122, 913
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	2 cut(s)	119, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	2 cut(s)	956, 972
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	3 cut(s)	639, 684, 1082
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	3 cut(s)	137, 436, 1068
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	3 cut(s)	8, 76, 652
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	661
CviAII	CATG	4 cut(s)	102, 417, 602, 664
CviJI	RGCY	8 cut(s)	109, 136, 311, 389, 459, 806, 918, 1035
CviKI_1	RGCY	8 cut(s)	109, 136, 311, 389, 459, 806, 918, 1035
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	3 cut(s)	159, 559, 741
DpnI	GATC	2 cut(s)	121, 912
DpnII	GATC	2 cut(s)	119, 910
DraIII	CACNNNGTG	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	793
EarI	CTCTTC	1 cut(s)	793
Eco130I	CCWWGG	3 cut(s)	101, 306, 753
Eco47I	GGWCC	3 cut(s)	8, 76, 652
Eco57I	CTGAAG	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT14I	CCWWGG	3 cut(s)	101, 306, 753
ErhI	CCWWGG	3 cut(s)	101, 306, 753
FaeI	CATG	4 cut(s)	105, 420, 605, 667
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FatI	CATG	4 cut(s)	101, 416, 601, 663
Fnu4HI	GCNGC	2 cut(s)	460, 583
FokI	GGATG	3 cut(s)	144, 443, 1075
Fsp4HI	GCNGC	2 cut(s)	460, 583
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	2 cut(s)	460, 583
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	4 cut(s)	105, 420, 605, 667
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	916
HinfI	GANTC	2 cut(s)	511, 596
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	743, 887
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	552, 562, 779
Hpy188III	TCNNGA	3 cut(s)	202, 593, 819
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	2 cut(s)	67, 620
HpyCH4III	ACNGT	2 cut(s)	361, 941
HpyCH4IV	ACGT	3 cut(s)	383, 486, 903
HpyCH4V	TGCA	8 cut(s)	148, 284, 341, 351, 837, 958, 974, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	3 cut(s)	159, 559, 741
HpySE526I	ACGT	3 cut(s)	383, 486, 903
Hsp92II	CATG	4 cut(s)	105, 420, 605, 667
HspAI	GCGC	1 cut(s)	585
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	119, 910
Lsp1109I	GCAGC	1 cut(s)	446
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	3 cut(s)	383, 486, 903
MaeIII	GTNAC	5 cut(s)	178, 355, 541, 688, 875
MalI	GATC	2 cut(s)	121, 912
MboI	GATC	2 cut(s)	119, 910
MflI	RGATCY	1 cut(s)	119
MluCI	AATT	8 cut(s)	49, 169, 229, 315, 641, 698, 718, 832
MmeI	TCCRAC	4 cut(s)	97, 469, 556, 757
MnlI	CCTC	6 cut(s)	154, 207, 258, 270, 1059, 1062
MseI	TTAA	7 cut(s)	66, 81, 207, 405, 483, 945, 1046
MslI	CAYNNNNRTG	2 cut(s)	153, 855
MspCI	CTTAAG	2 cut(s)	80, 1045
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	160
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	119, 910
NlaIII	CATG	4 cut(s)	105, 420, 605, 667
NmuCI	GTSAC	2 cut(s)	688, 875
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	511, 596
PflFI	GACNNNGTC	1 cut(s)	1013
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	461, 584
PpuMI	RGGWCCY	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	900
Psp1406I	AACGTT	3 cut(s)	383, 486, 903
Psp5II	RGGWCCY	1 cut(s)	76
PspPI	GGNCC	3 cut(s)	8, 76, 652
PspPPI	RGGWCCY	1 cut(s)	76
PstI	CTGCAG	2 cut(s)	960, 976
PsuI	RGATCY	1 cut(s)	119
PsyI	GACNNNGTC	1 cut(s)	1013
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	2 cut(s)	153, 855
SaqAI	TTAA	7 cut(s)	66, 81, 207, 405, 483, 945, 1046
SatI	GCNGC	2 cut(s)	460, 583
Sau3AI	GATC	2 cut(s)	119, 910
Sau96I	GGNCC	3 cut(s)	8, 76, 652
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	8 cut(s)	10, 78, 386, 489, 662, 755, 906, 920
SfcI	CTRYAG	2 cut(s)	956, 972
SinI	GGWCC	3 cut(s)	8, 76, 652
SmiMI	CAYNNNNRTG	2 cut(s)	153, 855
SmlI	CTYRAG	2 cut(s)	80, 1045
SmoI	CTYRAG	2 cut(s)	80, 1045
Sse9I	AATT	8 cut(s)	49, 169, 229, 315, 641, 698, 718, 832
SsiI	CCGC	2 cut(s)	582, 870
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	3 cut(s)	101, 306, 753
TaaI	ACNGT	2 cut(s)	361, 941
TaiI	ACGT	3 cut(s)	386, 489, 906
TasI	AATT	8 cut(s)	49, 169, 229, 315, 641, 698, 718, 832
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	2 cut(s)	511, 596
Tru1I	TTAA	7 cut(s)	66, 81, 207, 405, 483, 945, 1046
Tru9I	TTAA	7 cut(s)	66, 81, 207, 405, 483, 945, 1046
TseFI	GTSAC	2 cut(s)	688, 875
TseI	GCWGC	1 cut(s)	459
Tsp45I	GTSAC	2 cut(s)	688, 875
TspDTI	ATGAA	1 cut(s)	519
TspGWI	ACGGA	1 cut(s)	1012
Tth111I	GACNNNGTC	1 cut(s)	1013
Van91I	CCANNNNNTGG	1 cut(s)	116
Vha464I	CTTAAG	2 cut(s)	80, 1045
VpaK11BI	GGWCC	3 cut(s)	8, 76, 652
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	5 cut(s)	49, 169, 229, 698, 718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	994
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.