Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012272

Physical Location & Seq

Genomic Coordinates Reverse (-)

18320281 .. 18323183

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0196500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGCAACTGTCAGGCGGCGGAGGCGGCGACGGTGATCATTCACCACCCGGCCAACAACAAGGTCGAGAGGATTTACTGGTCGGTGAGCGCTCACGAGATCATGACGTCGAATCCGGGGAACTACGTGGCGCTTGTGGTGACGTCGCCGACGTTGAAGGCCGAGAATGGCGCGCCGGTTAAGCAGCTCAAGCTTCTCAGGCCGGACGACACTTTGCTTATCGGACAGGTTTACCGGCTCATCAGTTTCGAAGATGTGTTGAAGGAGTTTGCTGCTAAAAAGTCTGTGAAGCTGGGGAGGTTGCTGAGGGATAGCGGTGGTCTTGGCCTGGAACTGAAGAAAAAAGACTTGGATGGTCCGAATCCGAATTCGAAGTCCGCCGACCGCAATTCTACCAAGATGGAGCATGAGGCTCACCGTGTCGGAAGCAGCAGTAGTGGTGGTTGTGGTGGTGGCAGCAGCAGAGGTATGGCGAGGAATCATGGTGGTGGGGGGCAGTGGAGGCCAGCTTTGCAGAGCATTGCAGAACTTGGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0003824 GO:0004175 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0006810 GO:0006888 GO:0006996 GO:0007030 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010256 GO:0016043 GO:0016192 GO:0016787 GO:0017016 GO:0017112 GO:0017137 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030008 GO:0031267 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048518 GO:0050000 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065009 GO:0070011 GO:0071704 GO:0071840 GO:0090230 GO:0090234 GO:0098687 GO:0098772 GO:0098813 GO:0099023 GO:0140096 GO:1901564 GO:1902115 GO:1903827 GO:1903829 GO:1905340 GO:1905342

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

179

Amino Acids

19.05

Weight (kDa)

9.45

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADRE	PF14009	1 - 176	6.6e-27	PADRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39820 AT4G39820
fragaria_vesca	FvH4_1g21530
prunus_persica	Prupe.3G102100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115391
rosa_laevigata	RLG00000018182
rosa_multiflora	Rmu_co8054726.1_g000001 Rmu_co8464345.1_g000001 Rmu_sc0001897.1_g000010 Rmu_sc0005767.1_g000004
rosa_roxburghii	Rroxscaffold_2G00128350 Rroxscaffold_2G00129130
rosa_rugosa	Rorug02G0196400 Rorug02G0196500
rosa_samantha	Rh2AG254500 Rh2BG264600 Rh2CG259100 Rh2DG262600
rosa_wichuraiana	Rw2G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	110, 146
AccII	CGCG	1 cut(s)	173
AciI	CCGC	6 cut(s)	17, 20, 26, 315, 378, 385
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	2 cut(s)	107, 143
AfeI	AGCGCT	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	157, 262
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	4 cut(s)	187, 193, 292, 509
AluI	AGCT	4 cut(s)	187, 193, 292, 509
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	5 cut(s)	51, 159, 200, 325, 503
ApeKI	GCWGC	5 cut(s)	184, 272, 429, 456, 459
ApoI	RAATTY	1 cut(s)	367
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AscI	GGCGCGCC	1 cut(s)	171
AspLEI	GCGC	4 cut(s)	92, 133, 173, 175
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	2 cut(s)	50, 117
AsuHPI	GGTGA	5 cut(s)	35, 46, 97, 151, 407
AsuII	TTCGAA	2 cut(s)	249, 371
AvaII	GGWCC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	95
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	5 cut(s)	196, 259, 441, 468, 471
BccI	CCATC	2 cut(s)	347, 394
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	2 cut(s)	50, 117
BfoI	RGCGCY	2 cut(s)	93, 134
BisI	GCNGC	7 cut(s)	18, 27, 185, 273, 430, 457, 460
BlsI	GCNGC	7 cut(s)	19, 28, 186, 274, 431, 458, 461
Bme1390I	CCNGG	3 cut(s)	50, 117, 329
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmrFI	CCNGG	3 cut(s)	50, 117, 329
Bpu10I	CCTNAGC	1 cut(s)	305
Bpu14I	TTCGAA	2 cut(s)	249, 371
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	50, 117
BsaAI	YACGTR	1 cut(s)	127
BsaHI	GRCGYC	2 cut(s)	107, 143
BsaJI	CCNNGG	1 cut(s)	116
Bse118I	RCCGGY	2 cut(s)	175, 234
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	211, 296
BseNI	ACTGG	1 cut(s)	83
BsePI	GCGCGC	1 cut(s)	171
BseXI	GCAGC	5 cut(s)	196, 259, 441, 468, 471
BseYI	CCCAGC	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	5 cut(s)	53, 161, 202, 327, 505
BsiEI	CGRYCG	1 cut(s)	385
BsiSI	CCGG	5 cut(s)	50, 116, 176, 203, 235
BsnI	GGCC	5 cut(s)	53, 161, 202, 327, 505
Bsp119I	TTCGAA	2 cut(s)	249, 371
Bsp143I	GATC	2 cut(s)	36, 99
BspACI	CCGC	6 cut(s)	17, 20, 26, 315, 378, 385
BspANI	GGCC	5 cut(s)	53, 161, 202, 327, 505
BspCNI	CTCAG	2 cut(s)	210, 297
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	102
BspT104I	TTCGAA	2 cut(s)	249, 371
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	2 cut(s)	175, 234
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	2 cut(s)	175, 234
BssECI	CCNNGG	1 cut(s)	116
BssHII	GCGCGC	1 cut(s)	171
BssMI	GATC	2 cut(s)	36, 99
BssNI	GRCGYC	2 cut(s)	107, 143
BssSI	CACGAG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	11, 34, 419
BstACI	GRCGYC	2 cut(s)	107, 143
BstBAI	YACGTR	1 cut(s)	127
BstBI	TTCGAA	2 cut(s)	249, 371
BstC8I	GCNNGC	2 cut(s)	173, 507
BstDEI	CTNAG	2 cut(s)	197, 305
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	2 cut(s)	93, 134
BstHHI	GCGC	4 cut(s)	92, 133, 173, 175
BstKTI	GATC	2 cut(s)	39, 102
BstMBI	GATC	2 cut(s)	36, 99
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 26, 181, 190, 199, 502, 511
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	3 cut(s)	48, 115, 327
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	5 cut(s)	196, 259, 441, 468, 471
BsuRI	GGCC	5 cut(s)	53, 161, 202, 327, 505
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	1 cut(s)	503
Cac8I	GCNNGC	2 cut(s)	173, 507
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	4 cut(s)	92, 133, 173, 175
Cfr10I	RCCGGY	2 cut(s)	175, 234
Cfr13I	GGNCC	1 cut(s)	356
CviAII	CATG	3 cut(s)	103, 407, 482
DdeI	CTNAG	2 cut(s)	197, 305
DpnI	GATC	2 cut(s)	38, 101
DpnII	GATC	2 cut(s)	36, 99
EaeI	YGGCCR	1 cut(s)	51
EciI	GGCGGA	2 cut(s)	35, 367
Eco47I	GGWCC	1 cut(s)	356
Eco47III	AGCGCT	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	327
FaeI	CATG	3 cut(s)	106, 410, 485
FaiI	YATR	4 cut(s)	104, 408, 470, 483
FatI	CATG	3 cut(s)	102, 406, 481
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	7 cut(s)	18, 27, 185, 273, 430, 457, 460
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	7 cut(s)	18, 27, 185, 273, 430, 457, 460
GlaI	GCGC	4 cut(s)	91, 132, 172, 174
GluI	GCNGC	7 cut(s)	18, 27, 185, 273, 430, 457, 460
GsaI	CCCAGC	1 cut(s)	296
HaeII	RGCGCY	2 cut(s)	93, 134
HaeIII	GGCC	5 cut(s)	53, 161, 202, 327, 505
HapII	CCGG	5 cut(s)	50, 116, 176, 203, 235
HhaI	GCGC	4 cut(s)	92, 133, 173, 175
Hin1I	GRCGYC	2 cut(s)	107, 143
Hin1II	CATG	3 cut(s)	106, 410, 485
Hin6I	GCGC	4 cut(s)	90, 131, 171, 173
HinP1I	GCGC	4 cut(s)	90, 131, 171, 173
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	3 cut(s)	112, 361, 478
HpaII	CCGG	5 cut(s)	50, 116, 176, 203, 235
HphI	GGTGA	5 cut(s)	35, 46, 97, 151, 407
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	4 cut(s)	224, 360, 366, 425
Hpy188III	TCNNGA	3 cut(s)	67, 95, 103
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	4 cut(s)	34, 112, 148, 154
HpyAV	CCTTC	2 cut(s)	151, 256
HpyCH4III	ACNGT	3 cut(s)	11, 34, 419
HpyCH4IV	ACGT	4 cut(s)	107, 126, 143, 152
HpyCH4V	TGCA	2 cut(s)	514, 524
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 26, 181, 190, 199, 502, 511
HpyF3I	CTNAG	2 cut(s)	197, 305
HpySE526I	ACGT	4 cut(s)	107, 126, 143, 152
Hsp92I	GRCGYC	2 cut(s)	107, 143
Hsp92II	CATG	3 cut(s)	106, 410, 485
HspAI	GCGC	4 cut(s)	90, 131, 171, 173
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 99
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	5 cut(s)	196, 259, 441, 468, 471
MaeII	ACGT	4 cut(s)	107, 126, 143, 152
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	38, 101
MboI	GATC	2 cut(s)	36, 99
MboII	GAAGA	2 cut(s)	263, 349
MluCI	AATT	2 cut(s)	367, 388
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	8 cut(s)	16, 63, 291, 300, 403, 458, 468, 495
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	486
MspI	CCGG	5 cut(s)	50, 116, 176, 203, 235
MspR9I	CCNGG	3 cut(s)	50, 117, 329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	7 cut(s)	23, 26, 181, 190, 199, 502, 511
NciI	CCSGG	2 cut(s)	50, 117
NdeII	GATC	2 cut(s)	36, 99
NlaIII	CATG	3 cut(s)	106, 410, 485
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	139
NspV	TTCGAA	2 cut(s)	249, 371
PagI	TCATGA	1 cut(s)	102
PalAI	GGCGCGCC	1 cut(s)	171
PauI	GCGCGC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	112, 361, 478
PkrI	GCNGC	7 cut(s)	19, 28, 186, 274, 431, 458, 461
Ppu21I	YACGTR	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	356
PteI	GCGCGC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	7 cut(s)	18, 27, 185, 273, 430, 457, 460
Sau3AI	GATC	2 cut(s)	36, 99
Sau96I	GGNCC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	50, 117, 329
SfuI	TTCGAA	2 cut(s)	249, 371
SgsI	GGCGCGCC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	367, 388
SsiI	CCGC	6 cut(s)	17, 20, 26, 315, 378, 385
StyD4I	CCNGG	3 cut(s)	48, 115, 327
TaaI	ACNGT	3 cut(s)	11, 34, 419
TaiI	ACGT	4 cut(s)	110, 129, 146, 155
TaqI	TCGA	4 cut(s)	66, 110, 249, 371
TasI	AATT	2 cut(s)	367, 388
TauI	GCSGC	2 cut(s)	20, 29
TfiI	GAWTC	3 cut(s)	112, 361, 478
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	503
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	5 cut(s)	184, 272, 429, 456, 459
Tsp45I	GTSAC	1 cut(s)	139
TspRI	CASTG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	367
ZraI	GACGTC	2 cut(s)	108, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.