Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464345.1

Orthogroup ID

OG0012272

Physical Location & Seq

Genomic Coordinates Reverse (-)

236 .. 1515

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464345.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ctgcatctcctccaccttccaaatccacacccaccaaactcgcccacatctcctccacctcgcagctctgacaaggtcaccttcacgcgagctcagtccctcctcaacaagccccatgaccacctcgtctacttcacgtacaacgtcctcgccttgaccaaactgcatcgtttcaccgaagccgcgtccgagattgattccctagaagacctcaacagctttcggtaccattacaaggggtattcgaatgtgtacccgaaccgggtcgggtctatgtacgtgctcttggactttgtgaggagtaaggtgaaggagaaaggagagattgggagtctggcgatttcggaagggtggctccgattttggacctttttgttggatctgagcttcaattggattggcattgggagaattatggtaatggttgttgattcagcagaggtgaaaagttttggatgcatggtaataccagaggtgaaaagtattagaggccaccaccaggaggaccagaacagggaggcgagtcaatctgcccaggtcccgctgctagaggtcgtcgaagattgcggaaaagccgagtcgggtttcagggttccggtcgggtttgacgcaaagaagagagagaacgaaggttctgatttctggaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0003824 GO:0004175 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0006810 GO:0006888 GO:0006996 GO:0007030 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010256 GO:0016043 GO:0016192 GO:0016787 GO:0017016 GO:0017112 GO:0017137 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030008 GO:0031267 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048518 GO:0050000 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065009 GO:0070011 GO:0071704 GO:0071840 GO:0090230 GO:0090234 GO:0098687 GO:0098772 GO:0098813 GO:0099023 GO:0140096 GO:1901564 GO:1902115 GO:1903827 GO:1903829 GO:1905340 GO:1905342

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

216

Amino Acids

24.58

Weight (kDa)

6.83

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39820 AT4G39820
fragaria_vesca	FvH4_1g21530
prunus_persica	Prupe.3G102100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115391
rosa_laevigata	RLG00000018182
rosa_multiflora	Rmu_co8054726.1_g000001 Rmu_co8464345.1_g000001 Rmu_sc0001897.1_g000010 Rmu_sc0005767.1_g000004
rosa_roxburghii	Rroxscaffold_2G00128350 Rroxscaffold_2G00129130
rosa_rugosa	Rorug02G0196400 Rorug02G0196500
rosa_samantha	Rh2AG254500 Rh2BG264600 Rh2CG259100 Rh2DG262600
rosa_wichuraiana	Rw2G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	88, 185
AciI	CCGC	3 cut(s)	183, 542, 567
AclWI	GGATC	1 cut(s)	387
AfaI	GTAC	4 cut(s)	140, 227, 254, 278
AfiI	CCNNNNNNNGG	5 cut(s)	235, 262, 499, 502, 514
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	498, 534
AluBI	AGCT	4 cut(s)	66, 92, 219, 387
AluI	AGCT	4 cut(s)	66, 92, 219, 387
Alw21I	GWGCWC	2 cut(s)	94, 285
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	63, 544
Asp718I	GGTACC	1 cut(s)	225
AspS9I	GGNCC	3 cut(s)	366, 505, 538
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	5 cut(s)	70, 166, 319, 454, 487
AsuII	TTCGAA	1 cut(s)	245
AvaII	GGWCC	3 cut(s)	366, 505, 538
BanI	GGYRCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	94, 285
BbvI	GCAGC	2 cut(s)	75, 531
BciT130I	CCWGG	2 cut(s)	500, 536
BcnI	CCSGG	1 cut(s)	263
BfaI	CTAG	2 cut(s)	203, 548
BisI	GCNGC	3 cut(s)	64, 183, 545
BlsI	GCNGC	3 cut(s)	65, 184, 546
Bme1390I	CCNGG	3 cut(s)	263, 500, 536
Bme18I	GGWCC	3 cut(s)	366, 505, 538
BmgT120I	GGNCC	3 cut(s)	366, 505, 538
BmiI	GGNNCC	4 cut(s)	227, 356, 540, 594
BmrFI	CCNGG	3 cut(s)	263, 500, 536
BmsI	GCATC	3 cut(s)	13, 175, 446
BpiI	GAAGAC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	263
BsaAI	YACGTR	2 cut(s)	138, 280
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	5 cut(s)	235, 262, 499, 502, 514
BseBI	CCWGG	2 cut(s)	500, 536
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	461
BseLI	CCNNNNNNNGG	5 cut(s)	235, 262, 499, 502, 514
BseMII	CTCAG	2 cut(s)	107, 374
BseRI	GAGGAG	3 cut(s)	42, 92, 313
BseXI	GCAGC	2 cut(s)	75, 531
Bsh1236I	CGCG	2 cut(s)	88, 185
Bsh1285I	CGRYCG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	492
BshNI	GGYRCC	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	94, 285
BsiSI	CCGG	2 cut(s)	262, 596
BslFI	GGGAC	2 cut(s)	82, 524
BslI	CCNNNNNNNGG	5 cut(s)	235, 262, 499, 502, 514
BsmFI	GGGAC	2 cut(s)	82, 524
BsnI	GGCC	1 cut(s)	492
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	94, 285
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	3 cut(s)	183, 542, 567
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	106, 375
BspFNI	CGCG	2 cut(s)	88, 185
BspLI	GGNNCC	4 cut(s)	227, 356, 540, 594
BspPI	GGATC	1 cut(s)	387
BspT104I	TTCGAA	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	1 cut(s)	379
Bst2UI	CCWGG	2 cut(s)	500, 536
Bst6I	CTCTTC	1 cut(s)	611
BstBAI	YACGTR	2 cut(s)	138, 280
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	93, 383
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	461
BstFNI	CGCG	2 cut(s)	88, 185
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMCI	CGRYCG	1 cut(s)	600
BstNI	CCWGG	2 cut(s)	500, 536
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	3 cut(s)	261, 498, 534
BstUI	CGCG	2 cut(s)	88, 185
BstV1I	GCAGC	2 cut(s)	75, 531
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	366, 505, 538
CseI	GACGC	2 cut(s)	174, 617
Csp6I	GTAC	4 cut(s)	139, 226, 253, 277
CviAII	CATG	2 cut(s)	116, 460
CviJI	RGCY	9 cut(s)	66, 92, 112, 182, 219, 355, 387, 492, 575
CviKI_1	RGCY	9 cut(s)	66, 92, 112, 182, 219, 355, 387, 492, 575
CviQI	GTAC	4 cut(s)	139, 226, 253, 277
DdeI	CTNAG	2 cut(s)	93, 383
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	3 cut(s)	366, 505, 538
Eco53kI	GAGCTC	1 cut(s)	92
Eco91I	GGTNACC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	538
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	498, 534
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	2 cut(s)	119, 463
FaiI	YATR	4 cut(s)	117, 275, 416, 461
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	2 cut(s)	82, 524
FatI	CATG	2 cut(s)	115, 459
FauI	CCCGC	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	64, 183, 545
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	3 cut(s)	64, 183, 545
FspBI	CTAG	2 cut(s)	203, 548
GluI	GCNGC	3 cut(s)	64, 183, 545
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	2 cut(s)	262, 596
HgaI	GACGC	2 cut(s)	174, 617
Hin1II	CATG	2 cut(s)	119, 463
HinfI	GANTC	5 cut(s)	197, 331, 431, 523, 578
HpaII	CCGG	2 cut(s)	262, 596
HphI	GGTGA	5 cut(s)	70, 166, 319, 454, 487
Hpy166II	GTNNAC	2 cut(s)	130, 253
Hpy188I	TCNGA	6 cut(s)	70, 190, 346, 359, 384, 637
Hpy188III	TCNNGA	1 cut(s)	643
Hpy8I	GTNNAC	2 cut(s)	130, 253
Hpy99I	CGWCG	1 cut(s)	560
HpyAV	CCTTC	5 cut(s)	26, 91, 304, 341, 623
HpyCH4IV	ACGT	3 cut(s)	137, 144, 279
HpyCH4V	TGCA	3 cut(s)	4, 166, 459
HpyF3I	CTNAG	2 cut(s)	93, 383
HpySE526I	ACGT	3 cut(s)	137, 144, 279
Hsp92II	CATG	2 cut(s)	119, 463
KpnI	GGTACC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	360
Lsp1109I	GCAGC	2 cut(s)	75, 531
LweI	GCATC	3 cut(s)	13, 175, 446
MaeI	CTAG	2 cut(s)	203, 548
MaeII	ACGT	3 cut(s)	137, 144, 279
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	3 cut(s)	218, 572, 628
MfeI	CAATTG	1 cut(s)	391
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	94, 285
MluCI	AATT	2 cut(s)	391, 411
MlyI	GAGTC	3 cut(s)	340, 532, 587
MmeI	TCCRAC	1 cut(s)	357
Mph1103I	ATGCAT	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	544
MspI	CCGG	2 cut(s)	262, 596
MspR9I	CCNGG	3 cut(s)	263, 500, 536
MunI	CAATTG	1 cut(s)	391
MvaI	CCWGG	2 cut(s)	500, 536
MvnI	CGCG	2 cut(s)	88, 185
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	119, 463
NlaIV	GGNNCC	4 cut(s)	227, 356, 540, 594
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	461
NspV	TTCGAA	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	197, 431
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	65, 184, 546
PleI	GAGTC	3 cut(s)	339, 531, 586
PpsI	GAGTC	3 cut(s)	339, 531, 586
Ppu21I	YACGTR	2 cut(s)	138, 280
PpuMI	RGGWCCY	1 cut(s)	538
Psp124BI	GAGCTC	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	498, 534
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	2 cut(s)	498, 534
PspN4I	GGNNCC	4 cut(s)	227, 356, 540, 594
PspPI	GGNCC	3 cut(s)	366, 505, 538
PspPPI	RGGWCCY	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	379
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	4 cut(s)	140, 227, 254, 278
RsaNI	GTAC	4 cut(s)	139, 226, 253, 277
SacI	GAGCTC	1 cut(s)	94
SatI	GCNGC	3 cut(s)	64, 183, 545
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	3 cut(s)	366, 505, 538
SchI	GAGTC	3 cut(s)	340, 532, 587
ScrFI	CCNGG	3 cut(s)	263, 500, 536
SduI	GDGCHC	2 cut(s)	94, 285
SfaNI	GCATC	3 cut(s)	13, 175, 446
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	3 cut(s)	366, 505, 538
Sse9I	AATT	2 cut(s)	391, 411
SsiI	CCGC	3 cut(s)	183, 542, 567
SspMI	CTAG	2 cut(s)	203, 548
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	3 cut(s)	261, 498, 534
TaiI	ACGT	3 cut(s)	140, 147, 282
TaqI	TCGA	2 cut(s)	245, 558
TasI	AATT	2 cut(s)	391, 411
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	197, 431
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	63, 544
Tsp45I	GTSAC	1 cut(s)	76
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	3 cut(s)	366, 505, 538
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	203, 548
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.