Rmu_sc0005767.1_g000004

Trafficking protein particle complex subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005767.1
Physical Location & Seq
Forward (+)
21231 .. 22106
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005767.1_g000004.1.cds

Sequence Viewer

Length: 876 bp
atggacccagccgcacccgaatcccaatccctaaccctctcgaccgatcccctaagcgaccagttctcctccctcaacgacctcgcccacgagctcgcctccctccaggacctggccacccgcggctcctggcgctccattctcgacaaggtcgccgtcgccagagcccagtccctcctcaacaatccccacgaccacctcgtctacttcacctacaacgtcctcgccttgaccaaactgcgtcgtttcaccgaagccgcgtccgagatcgactccctagaagacctcaacagctcccggtaccgttacgaggggtatccgaatgtgtacccgaaccgggtcgggtctctggtgccgttctcgctgcggtggctttatgcgttaatgccgatcaagttgggccggcggcaggatgggctggaccggctgtacgtgctcttggactttgtgaggagtaaggtgaaggagaaaggagagattgggagtgtgagtgtgagtgtgtggaagaggagggaggtgtttgtgatgaatgggataattggggttcatttgaatcagaaggagttggctgcttgcttcagcttgattaaggacttgttgaaacgggattacacggacccggttctggtttcgaagctcgggtacattcagatgcaaatgggggacctagagggagctaagagctcgttcaatgtggtgcaggggttggtggagaaggaaggtgaagtggttgtgaaattgcactctgaaagatatacacttgacaacatcttaagaattccaatagagttgggcaggtcacctgaaaaacttgtcccatctacaattaaggatcgaagagacccattgtttggaacttctggaaaggaaccatga

Protein Analysis

291

Amino Acids

32.84

Weight (kDa)

7.79

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
Acc36I ACCTGC 1 cut(s) 786
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 2 cut(s) 300, 352
AccB7I CCANNNNNTGG 2 cut(s) 112, 851
AccI GTMKAC 1 cut(s) 204
AccII CGCG 2 cut(s) 123, 260
AciI CCGC 6 cut(s) 12, 121, 123, 258, 367, 406
AclWI GGATC 2 cut(s) 41, 840
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 777
AcuI CTGAAG 1 cut(s) 562
AfaI GTAC 4 cut(s) 302, 329, 431, 644
AfiI CCNNNNNNNGG 6 cut(s) 112, 310, 337, 409, 625, 851
AflII CTTAAG 1 cut(s) 772
AgsI TTSAA 3 cut(s) 553, 601, 691
AjnI CCWGG 3 cut(s) 105, 111, 128
AluBI AGCT 6 cut(s) 94, 294, 582, 637, 677, 684
AluI AGCT 6 cut(s) 94, 294, 582, 637, 677, 684
Alw21I GWGCWC 3 cut(s) 96, 438, 686
Alw26I GTCTC 2 cut(s) 351, 834
AlwI GGATC 2 cut(s) 41, 840
AlwNI CAGNNNCTG 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 2 cut(s) 114, 400
ApeKI GCWGC 2 cut(s) 364, 569
ApoI RAATTY 1 cut(s) 777
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
Asp718I GGTACC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 6 cut(s) 4, 109, 400, 421, 616, 664
AsuC2I CCSGG 3 cut(s) 298, 338, 620
AsuHPI GGTGA 5 cut(s) 202, 241, 472, 734, 792
AsuII TTCGAA 1 cut(s) 632
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 5 cut(s) 4, 109, 421, 616, 664
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 2 cut(s) 300, 352
BanII GRGCYC 3 cut(s) 96, 169, 686
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BauI CACGAG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 3 cut(s) 96, 438, 686
BbvI GCAGC 2 cut(s) 351, 556
BccI CCATC 2 cut(s) 407, 826
BceAI ACGGC 2 cut(s) 140, 340
BciT130I CCWGG 3 cut(s) 107, 113, 130
BciVI GTATCC 1 cut(s) 327
BcnI CCSGG 3 cut(s) 298, 338, 620
BcoDI GTCTC 2 cut(s) 351, 834
BfaI CTAG 2 cut(s) 278, 668
BfoI RGCGCY 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 772
BfuAI ACCTGC 1 cut(s) 786
BfuI GTATCC 1 cut(s) 327
BisI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 570
BlsI GCNGC 6 cut(s) 13, 125, 259, 366, 408, 571
Bme1390I CCNGG 6 cut(s) 107, 113, 130, 298, 338, 620
Bme18I GGWCC 5 cut(s) 4, 109, 421, 616, 664
BmeT110I CYCGRG 1 cut(s) 638
BmgT120I GGNCC 6 cut(s) 4, 109, 400, 421, 616, 664
BmiI GGNNCC 7 cut(s) 6, 127, 302, 354, 618, 665, 870
BmrFI CCNGG 6 cut(s) 107, 113, 130, 298, 338, 620
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 642
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 288
BplI GAGNNNNNCTC 4 cut(s) 83, 115, 257, 289
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 632
BpuMI CCSGG 3 cut(s) 298, 338, 620
BsaAI YACGTR 1 cut(s) 433
BsaI GGTCTC 2 cut(s) 351, 834
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 475, 505
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 310, 337, 409, 625, 851
Bse118I RCCGGY 2 cut(s) 402, 423
Bse1I ACTGG 2 cut(s) 61, 169
BseBI CCWGG 3 cut(s) 107, 113, 130
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 6 cut(s) 112, 310, 337, 409, 625, 851
BseNI ACTGG 2 cut(s) 61, 169
BseRI GAGGAG 4 cut(s) 58, 167, 466, 523
BseXI GCAGC 2 cut(s) 351, 556
BseYI CCCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 719
Bsh1236I CGCG 2 cut(s) 123, 260
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 116, 402
BshNI GGYRCC 2 cut(s) 300, 352
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 3 cut(s) 96, 438, 686
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 5 cut(s) 298, 337, 403, 424, 620
BslFI GGGAC 3 cut(s) 157, 677, 800
BslI CCNNNNNNNGG 6 cut(s) 112, 310, 337, 409, 625, 851
BsmAI GTCTC 2 cut(s) 351, 834
BsmFI GGGAC 3 cut(s) 157, 677, 800
BsnI GGCC 2 cut(s) 116, 402
Bso31I GGTCTC 2 cut(s) 351, 834
BsoBI CYCGRG 1 cut(s) 638
Bsp119I TTCGAA 1 cut(s) 632
Bsp1286I GDGCHC 4 cut(s) 96, 169, 438, 686
Bsp143I GATC 4 cut(s) 46, 267, 390, 832
BspACI CCGC 6 cut(s) 12, 121, 123, 258, 367, 406
BspANI GGCC 2 cut(s) 116, 402
BspFNI CGCG 2 cut(s) 123, 260
BspLI GGNNCC 7 cut(s) 6, 127, 302, 354, 618, 665, 870
BspMI ACCTGC 1 cut(s) 786
BspPI GGATC 2 cut(s) 41, 840
BspT104I TTCGAA 1 cut(s) 632
BspT107I GGYRCC 2 cut(s) 300, 352
BspTI CTTAAG 1 cut(s) 772
BspTNI GGTCTC 2 cut(s) 351, 834
BsrFI RCCGGY 2 cut(s) 402, 423
BsrI ACTGG 2 cut(s) 61, 169
BssAI RCCGGY 2 cut(s) 402, 423
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 4 cut(s) 46, 267, 390, 832
BssSI CACGAG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 3 cut(s) 107, 113, 130
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 2 cut(s) 500, 832
BstAFI CTTAAG 1 cut(s) 772
BstBAI YACGTR 1 cut(s) 433
BstBI TTCGAA 1 cut(s) 632
BstC8I GCNNGC 3 cut(s) 96, 404, 574
BstDEI CTNAG 2 cut(s) 53, 678
BstDSI CCRYGG 1 cut(s) 121
BstEII GGTNACC 1 cut(s) 798
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 2 cut(s) 123, 260
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 4 cut(s) 49, 270, 393, 835
BstMAI GTCTC 2 cut(s) 351, 834
BstMBI GATC 4 cut(s) 46, 267, 390, 832
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 6 cut(s) 132, 361, 370, 415, 424, 433
BstNI CCWGG 3 cut(s) 107, 113, 130
BstPI GGTNACC 1 cut(s) 798
BstSCI CCNGG 6 cut(s) 105, 111, 128, 296, 336, 618
BstUI CGCG 2 cut(s) 123, 260
BstV1I GCAGC 2 cut(s) 351, 556
BstV2I GAAGAC 1 cut(s) 288
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 2 cut(s) 116, 402
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 1 cut(s) 418
BveI ACCTGC 1 cut(s) 786
Cac8I GCNNGC 3 cut(s) 96, 404, 574
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 1 cut(s) 135
Cfr10I RCCGGY 2 cut(s) 402, 423
Cfr13I GGNCC 6 cut(s) 4, 109, 400, 421, 616, 664
Cfr42I CCGCGG 1 cut(s) 124
CseI GACGC 2 cut(s) 230, 249
Csp6I GTAC 4 cut(s) 301, 328, 430, 643
CviAII CATG 1 cut(s) 873
CviQI GTAC 4 cut(s) 301, 328, 430, 643
DdeI CTNAG 2 cut(s) 53, 678
DpnI GATC 4 cut(s) 48, 269, 392, 834
DpnII GATC 4 cut(s) 46, 267, 390, 832
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 500, 832
EarI CTCTTC 2 cut(s) 500, 832
Ecl136II GAGCTC 2 cut(s) 94, 684
Eco24I GRGCYC 3 cut(s) 96, 169, 686
Eco31I GGTCTC 2 cut(s) 351, 834
Eco47I GGWCC 5 cut(s) 4, 109, 421, 616, 664
Eco53kI GAGCTC 2 cut(s) 94, 684
Eco57I CTGAAG 1 cut(s) 562
Eco88I CYCGRG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 798
EcoICRI GAGCTC 2 cut(s) 94, 684
EcoO109I RGGNCCY 2 cut(s) 109, 664
EcoO65I GGTNACC 1 cut(s) 798
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 3 cut(s) 105, 111, 128
EcoT38I GRGCYC 3 cut(s) 96, 169, 686
FaeI CATG 1 cut(s) 876
FaiI YATR 3 cut(s) 378, 756, 874
FaqI GGGAC 3 cut(s) 157, 677, 800
FatI CATG 1 cut(s) 872
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 570
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 3 cut(s) 96, 169, 686
Fsp4HI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 570
FspBI CTAG 2 cut(s) 278, 668
GlaI GCGC 1 cut(s) 134
GluI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 570
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 2 cut(s) 116, 402
HapII CCGG 5 cut(s) 298, 337, 403, 424, 620
HgaI GACGC 2 cut(s) 230, 249
HhaI GCGC 1 cut(s) 135
Hin1II CATG 1 cut(s) 876
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 3 cut(s) 20, 272, 553
HpaII CCGG 5 cut(s) 298, 337, 403, 424, 620
HphI GGTGA 5 cut(s) 202, 241, 472, 734, 792
Hpy166II GTNNAC 2 cut(s) 205, 328
Hpy188I TCNGA 5 cut(s) 265, 321, 558, 651, 748
Hpy188III TCNNGA 3 cut(s) 40, 143, 861
Hpy8I GTNNAC 2 cut(s) 205, 328
Hpy99I CGWCG 2 cut(s) 161, 246
HpyAV CCTTC 4 cut(s) 457, 553, 709, 713
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 2 cut(s) 219, 432
HpyCH4V TGCA 3 cut(s) 655, 700, 742
HpyF10VI GCNNNNNNNGC 6 cut(s) 132, 361, 370, 415, 424, 433
HpyF3I CTNAG 2 cut(s) 53, 678
HpySE526I ACGT 2 cut(s) 219, 432
Hsp92II CATG 1 cut(s) 876
HspAI GCGC 1 cut(s) 133
KpnI GGTACC 1 cut(s) 304
KroI GCCGGC 1 cut(s) 402
KroNI GCCGGC 1 cut(s) 404
KspI CCGCGG 1 cut(s) 124
Kzo9I GATC 4 cut(s) 46, 267, 390, 832
LmnI GCTCC 4 cut(s) 131, 140, 299, 674
Lsp1109I GCAGC 2 cut(s) 351, 556
LweI GCATC 1 cut(s) 642
MaeI CTAG 2 cut(s) 278, 668
MaeII ACGT 2 cut(s) 219, 432
MaeIII GTNAC 2 cut(s) 305, 798
MalI GATC 4 cut(s) 48, 269, 392, 834
MboI GATC 4 cut(s) 46, 267, 390, 832
MboII GAAGA 3 cut(s) 293, 517, 849
MhlI GDGCHC 4 cut(s) 96, 169, 438, 686
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 4 cut(s) 537, 737, 777, 825
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 1 cut(s) 266
Mox20I TGGCCA 1 cut(s) 116
MroNI GCCGGC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 116
MseI TTAA 4 cut(s) 383, 588, 773, 828
MslI CAYNNNNRTG 1 cut(s) 650
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 123
MspCI CTTAAG 1 cut(s) 772
MspI CCGG 5 cut(s) 298, 337, 403, 424, 620
MspR9I CCNGG 6 cut(s) 107, 113, 130, 298, 338, 620
MvaI CCWGG 3 cut(s) 107, 113, 130
MvnI CGCG 2 cut(s) 123, 260
MwoI GCNNNNNNNGC 6 cut(s) 132, 361, 370, 415, 424, 433
NaeI GCCGGC 1 cut(s) 404
NciI CCSGG 3 cut(s) 298, 338, 620
NdeII GATC 4 cut(s) 46, 267, 390, 832
NgoMIV GCCGGC 1 cut(s) 402
NlaIII CATG 1 cut(s) 876
NlaIV GGNNCC 7 cut(s) 6, 127, 302, 354, 618, 665, 870
NmuCI GTSAC 1 cut(s) 798
NspV TTCGAA 1 cut(s) 632
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdiI GCCGGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 20, 553
PflFI GACNNNGTC 1 cut(s) 149
PflMI CCANNNNNTGG 2 cut(s) 112, 851
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 6 cut(s) 13, 125, 259, 366, 408, 571
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 433
PpuMI RGGWCCY 2 cut(s) 109, 664
Psp124BI GAGCTC 2 cut(s) 96, 686
Psp5II RGGWCCY 2 cut(s) 109, 664
Psp6I CCWGG 3 cut(s) 105, 111, 128
PspEI GGTNACC 1 cut(s) 798
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 3 cut(s) 105, 111, 128
PspN4I GGNNCC 7 cut(s) 6, 127, 302, 354, 618, 665, 870
PspPI GGNCC 6 cut(s) 4, 109, 400, 421, 616, 664
PspPPI RGGWCCY 2 cut(s) 109, 664
PstNI CAGNNNCTG 1 cut(s) 112
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 4 cut(s) 302, 329, 431, 644
RsaNI GTAC 4 cut(s) 301, 328, 430, 643
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 2 cut(s) 96, 686
SacII CCGCGG 1 cut(s) 124
SaqAI TTAA 4 cut(s) 383, 588, 773, 828
SatI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 570
Sau3AI GATC 4 cut(s) 46, 267, 390, 832
Sau96I GGNCC 6 cut(s) 4, 109, 400, 421, 616, 664
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 6 cut(s) 107, 113, 130, 298, 338, 620
SduI GDGCHC 4 cut(s) 96, 169, 438, 686
SfaNI GCATC 1 cut(s) 642
Sfr303I CCGCGG 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 632
SgrBI CCGCGG 1 cut(s) 124
SinI GGWCC 5 cut(s) 4, 109, 421, 616, 664
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 772
SmoI CTYRAG 1 cut(s) 772
Sse9I AATT 4 cut(s) 537, 737, 777, 825
SsiI CCGC 6 cut(s) 12, 121, 123, 258, 367, 406
SspMI CTAG 2 cut(s) 278, 668
SstI GAGCTC 2 cut(s) 96, 686
StyD4I CCNGG 6 cut(s) 105, 111, 128, 296, 336, 618
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 2 cut(s) 222, 435
TaqI TCGA 5 cut(s) 41, 144, 270, 632, 835
TaqII GACCGA 1 cut(s) 59
TasI AATT 4 cut(s) 537, 737, 777, 825
TauI GCSGC 4 cut(s) 14, 126, 260, 409
TfiI GAWTC 2 cut(s) 20, 553
Tru1I TTAA 4 cut(s) 383, 588, 773, 828
Tru9I TTAA 4 cut(s) 383, 588, 773, 828
TseFI GTSAC 1 cut(s) 798
TseI GCWGC 2 cut(s) 364, 569
Tsp45I GTSAC 1 cut(s) 798
TspDTI ATGAA 2 cut(s) 536, 542
TspGWI ACGGA 1 cut(s) 629
Tth111I GACNNNGTC 1 cut(s) 149
Van91I CCANNNNNTGG 2 cut(s) 112, 851
Vha464I CTTAAG 1 cut(s) 772
VpaK11BI GGWCC 5 cut(s) 4, 109, 421, 616, 664
XapI RAATTY 1 cut(s) 777
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 2 cut(s) 278, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.