Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8054726.1

Orthogroup ID

OG0012272

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 563

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8054726.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 563 bp

gccacccgcggctcctggcgctccattctcgacaaggtcgccgtcgccagagcccagtccctcctcaacaatccccacgaccacctcgtctacttcacctacaacgtcctcgccttgaccaaactgcgtcgtttcaccgaagccgcgtccgagatcgactccctagaagacctcaacagctcccggtaccgttacgaggggtatccgaatgtgtacccgaaccgggtcgggtctctggtgccgttctcgctgcggtggctttatgcgttaatgccgatcaagttgggccggcggcaggatgggctggaccggctgtacgtgctcttggactttgtgaggagtaaggtgaaggagaaaggagagattgggagtgtgagtgtgagtgtgtggaagaggagggaggtgtttgtgatgaatgggataattggggttcatttgaatcagaaggagttggctgcttgcttcagcttgattaaggacttgttgaaacgggattacacggacccggttctggtttcgaagctcgggtacattcagatgcaaatgggggacctagagggagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0003824 GO:0004175 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0006810 GO:0006888 GO:0006996 GO:0007030 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010256 GO:0016043 GO:0016192 GO:0016787 GO:0017016 GO:0017112 GO:0017137 GO:0019538 GO:0019899 GO:0022402 GO:0022607 GO:0030008 GO:0031267 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048518 GO:0050000 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065009 GO:0070011 GO:0071704 GO:0071840 GO:0090230 GO:0090234 GO:0098687 GO:0098772 GO:0098813 GO:0099023 GO:0140096 GO:1901564 GO:1902115 GO:1903827 GO:1903829 GO:1905340 GO:1905342

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

188

Amino Acids

21.51

Weight (kDa)

9.52

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39820 AT4G39820
fragaria_vesca	FvH4_1g21530
prunus_persica	Prupe.3G102100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115391
rosa_laevigata	RLG00000018182
rosa_multiflora	Rmu_co8054726.1_g000001 Rmu_co8464345.1_g000001 Rmu_sc0001897.1_g000010 Rmu_sc0005767.1_g000004
rosa_roxburghii	Rroxscaffold_2G00128350 Rroxscaffold_2G00129130
rosa_rugosa	Rorug02G0196400 Rorug02G0196500
rosa_samantha	Rh2AG254500 Rh2BG264600 Rh2CG259100 Rh2DG262600
rosa_wichuraiana	Rw2G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	186, 238
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	2 cut(s)	9, 146
AciI	CCGC	5 cut(s)	7, 9, 144, 253, 292
AcuI	CTGAAG	1 cut(s)	448
AfaI	GTAC	4 cut(s)	188, 215, 317, 530
AfiI	CCNNNNNNNGG	4 cut(s)	196, 223, 295, 511
AgsI	TTSAA	2 cut(s)	439, 487
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	180, 468, 523
AluI	AGCT	3 cut(s)	180, 468, 523
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	237
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	250, 455
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	4 cut(s)	286, 307, 502, 550
AsuC2I	CCSGG	3 cut(s)	184, 224, 506
AsuHPI	GGTGA	3 cut(s)	88, 127, 358
AsuII	TTCGAA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	3 cut(s)	307, 502, 550
BanI	GGYRCC	2 cut(s)	186, 238
BanII	GRGCYC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	237, 442
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	2 cut(s)	26, 226
BciT130I	CCWGG	1 cut(s)	16
BciVI	GTATCC	1 cut(s)	213
BcnI	CCSGG	3 cut(s)	184, 224, 506
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	164, 554
BfoI	RGCGCY	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	5 cut(s)	10, 144, 251, 293, 456
BlsI	GCNGC	5 cut(s)	11, 145, 252, 294, 457
Bme1390I	CCNGG	4 cut(s)	16, 184, 224, 506
Bme18I	GGWCC	3 cut(s)	307, 502, 550
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	4 cut(s)	286, 307, 502, 550
BmiI	GGNNCC	5 cut(s)	13, 188, 240, 504, 551
BmrFI	CCNGG	4 cut(s)	16, 184, 224, 506
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu14I	TTCGAA	1 cut(s)	518
BpuMI	CCSGG	3 cut(s)	184, 224, 506
BsaAI	YACGTR	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 223, 295, 511
Bse118I	RCCGGY	2 cut(s)	288, 309
Bse1I	ACTGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	4 cut(s)	196, 223, 295, 511
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	3 cut(s)	53, 352, 409
BseXI	GCAGC	2 cut(s)	237, 442
Bsh1236I	CGCG	2 cut(s)	9, 146
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	2 cut(s)	186, 238
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	5 cut(s)	184, 223, 289, 310, 506
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	4 cut(s)	196, 223, 295, 511
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	288
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	524
Bsp119I	TTCGAA	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	55, 324
Bsp143I	GATC	2 cut(s)	153, 276
BspACI	CCGC	5 cut(s)	7, 9, 144, 253, 292
BspANI	GGCC	1 cut(s)	288
BspFNI	CGCG	2 cut(s)	9, 146
BspLI	GGNNCC	5 cut(s)	13, 188, 240, 504, 551
BspT104I	TTCGAA	1 cut(s)	518
BspT107I	GGYRCC	2 cut(s)	186, 238
BspTNI	GGTCTC	1 cut(s)	237
BsrFI	RCCGGY	2 cut(s)	288, 309
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	2 cut(s)	288, 309
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	2 cut(s)	153, 276
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	319
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	290, 460
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	2 cut(s)	9, 146
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	156, 279
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	2 cut(s)	153, 276
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 247, 256, 301, 310, 319
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	4 cut(s)	14, 182, 222, 504
BstUI	CGCG	2 cut(s)	9, 146
BstV1I	GCAGC	2 cut(s)	237, 442
BstV2I	GAAGAC	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	290, 460
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	2 cut(s)	288, 309
Cfr13I	GGNCC	4 cut(s)	286, 307, 502, 550
Cfr42I	CCGCGG	1 cut(s)	10
CseI	GACGC	2 cut(s)	116, 135
Csp6I	GTAC	4 cut(s)	187, 214, 316, 529
CviQI	GTAC	4 cut(s)	187, 214, 316, 529
DpnI	GATC	2 cut(s)	155, 278
DpnII	GATC	2 cut(s)	153, 276
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	3 cut(s)	307, 502, 550
Eco57I	CTGAAG	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	55
FaiI	YATR	1 cut(s)	264
FaqI	GGGAC	1 cut(s)	43
FauI	CCCGC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	5 cut(s)	10, 144, 251, 293, 456
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	5 cut(s)	10, 144, 251, 293, 456
FspBI	CTAG	2 cut(s)	164, 554
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	5 cut(s)	10, 144, 251, 293, 456
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	5 cut(s)	184, 223, 289, 310, 506
HgaI	GACGC	2 cut(s)	116, 135
HhaI	GCGC	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	158, 439
HpaII	CCGG	5 cut(s)	184, 223, 289, 310, 506
HphI	GGTGA	3 cut(s)	88, 127, 358
Hpy166II	GTNNAC	2 cut(s)	91, 214
Hpy188I	TCNGA	4 cut(s)	151, 207, 444, 537
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	2 cut(s)	91, 214
Hpy99I	CGWCG	2 cut(s)	47, 132
HpyAV	CCTTC	2 cut(s)	343, 439
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	2 cut(s)	105, 318
HpyCH4V	TGCA	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 247, 256, 301, 310, 319
HpySE526I	ACGT	2 cut(s)	105, 318
HspAI	GCGC	1 cut(s)	19
KpnI	GGTACC	1 cut(s)	190
KroI	GCCGGC	1 cut(s)	288
KroNI	GCCGGC	1 cut(s)	290
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	153, 276
LmnI	GCTCC	4 cut(s)	17, 26, 185, 560
Lsp1109I	GCAGC	2 cut(s)	237, 442
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	2 cut(s)	164, 554
MaeII	ACGT	2 cut(s)	105, 318
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	155, 278
MboI	GATC	2 cut(s)	153, 276
MboII	GAAGA	2 cut(s)	179, 403
MhlI	GDGCHC	2 cut(s)	55, 324
MluCI	AATT	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	152
MroNI	GCCGGC	1 cut(s)	288
MseI	TTAA	2 cut(s)	269, 474
MslI	CAYNNNNRTG	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	5 cut(s)	184, 223, 289, 310, 506
MspR9I	CCNGG	4 cut(s)	16, 184, 224, 506
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	2 cut(s)	9, 146
MwoI	GCNNNNNNNGC	6 cut(s)	18, 247, 256, 301, 310, 319
NaeI	GCCGGC	1 cut(s)	290
NciI	CCSGG	3 cut(s)	184, 224, 506
NdeII	GATC	2 cut(s)	153, 276
NgoMIV	GCCGGC	1 cut(s)	288
NlaIV	GGNNCC	5 cut(s)	13, 188, 240, 504, 551
NspV	TTCGAA	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	439
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	11, 145, 252, 294, 457
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	5 cut(s)	13, 188, 240, 504, 551
PspPI	GGNCC	4 cut(s)	286, 307, 502, 550
PspPPI	RGGWCCY	1 cut(s)	550
PsyI	GACNNNGTC	1 cut(s)	35
RsaI	GTAC	4 cut(s)	188, 215, 317, 530
RsaNI	GTAC	4 cut(s)	187, 214, 316, 529
RseI	CAYNNNNRTG	1 cut(s)	536
SacII	CCGCGG	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	269, 474
SatI	GCNGC	5 cut(s)	10, 144, 251, 293, 456
Sau3AI	GATC	2 cut(s)	153, 276
Sau96I	GGNCC	4 cut(s)	286, 307, 502, 550
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	4 cut(s)	16, 184, 224, 506
SduI	GDGCHC	2 cut(s)	55, 324
SfaNI	GCATC	1 cut(s)	528
Sfr303I	CCGCGG	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	518
SgrBI	CCGCGG	1 cut(s)	10
SinI	GGWCC	3 cut(s)	307, 502, 550
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	5 cut(s)	7, 9, 144, 253, 292
SspMI	CTAG	2 cut(s)	164, 554
StyD4I	CCNGG	4 cut(s)	14, 182, 222, 504
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	2 cut(s)	108, 321
TaqI	TCGA	3 cut(s)	30, 156, 518
TasI	AATT	1 cut(s)	423
TauI	GCSGC	3 cut(s)	12, 146, 295
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	2 cut(s)	269, 474
Tru9I	TTAA	2 cut(s)	269, 474
TseI	GCWGC	2 cut(s)	250, 455
TspDTI	ATGAA	2 cut(s)	422, 428
TspGWI	ACGGA	1 cut(s)	515
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	3 cut(s)	307, 502, 550
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	164, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.