RLG00000018182

Trafficking protein particle complex subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
26510365 .. 26511450
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018182

Sequence Viewer

Length: 1086 bp
ATGGACCCAGCCGCACCCGAATCCCAATCCCTAAACGTCTCGACCGATCCCCTAAGCGACCAGTTCTCCTCCCTCAACGACCTGGCCCACGAGCTCGCCTCCCTCCAGGACCTGGCCACCCGCGGCTCCTGGCGCTCCATTCTCGACAAGGTCGCCGTCGCCCGAGCCCAGTCCCTCCTCAACAAGCCCCACGACCACCTCGTCTACTTCACCTACAACGTCCTCGCCTTGACCAAACTGCGTCGTTTCACCGAAGCCGCGTCCGAGATCGACTCCCTAGAAGACCTCAACAGCTCCCGGTACCGTTACGAGGGGTATCCGAATGTGTACCCGAACCGGGTCGGGTCTATGGTGCCGTTCTCGCTGCGGTGGCTTTATGCGTTAATGCCGATCAAATTGGGCCGGCGGCAGGATGGGCTGGACCGGCTGTACGTGCTCTTGGACTTTGTGAGGAGTAAGGTGAAGGAGAAAGGAGAGATTGGGAGTGTGAGTGTGTGGAAGAGGAGGGAGGTGTTTGTGATGAATGGGATAATTGGGGTTCATTTGAATCACAAGGAGTTGGCTGCGTGCTTGAGCTTGATTAAGGACTTGTTGAACCGGGATTACACGGACCCGGTTCTGGTTTCCAAGCTCGGGTACATTCAGATGCAAATGGGGGACCTAGAGGGAGCTAAGAGCTCGTTCAATGCGGTGCAGGGGTTGGTGGATAAGGAAGGTGAAGTGGGAAGTGAGTTGAGGAACTTAGTGAGCAGGAACAAGGCGTTGATTTACATGGTGGGGAAGGACTATGTGTCGGCGGTGAGGGAGTATGAGGAGTGCATTGAGAGGGATGGGAGCGACGTCGTGGCGATTAATAACAAGTCTCTTTGCTTGATGTACTTGAGGGACTTGTCGGATTCGATCAAGGTGTTGGAGAATGCGCTGGAGAGAGTGCCTACGGTGGCGTTGAACGAGACGCTTGTGGTGAATTTGTGTAGTATGTATGAGCTGGCTTATGTTAATCATGGGGATATTAAGAGGACGCTCAGTAGCTGGATTGCCAGGGTTGCTCCTGATGATTTTGATTCGGCTTCTACAAGGATTTGA

Protein Analysis

362

Amino Acids

40.63

Weight (kDa)

5.79

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AatII GACGTC 1 cut(s) 843
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 2 cut(s) 300, 352
AccB7I CCANNNNNTGG 1 cut(s) 112
AccI GTMKAC 1 cut(s) 204
AccII CGCG 2 cut(s) 123, 260
AciI CCGC 8 cut(s) 12, 121, 123, 258, 367, 406, 689, 797
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 967
AcyI GRCGYC 1 cut(s) 840
AfaI GTAC 5 cut(s) 302, 329, 431, 638, 878
AfiI CCNNNNNNNGG 6 cut(s) 112, 310, 337, 409, 619, 633
AgsI TTSAA 4 cut(s) 547, 595, 685, 949
AhdI GACNNNNNGTC 1 cut(s) 790
AjnI CCWGG 5 cut(s) 81, 105, 111, 128, 1040
AluBI AGCT 8 cut(s) 94, 294, 576, 631, 671, 678, 988, 1032
AluI AGCT 8 cut(s) 94, 294, 576, 631, 671, 678, 988, 1032
Alw21I GWGCWC 3 cut(s) 96, 438, 680
Alw26I GTCTC 3 cut(s) 43, 867, 947
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 2 cut(s) 112, 1032
Ama87I CYCGRG 2 cut(s) 162, 632
AoxI GGCC 3 cut(s) 84, 114, 400
ApeKI GCWGC 2 cut(s) 364, 563
ApoI RAATTY 1 cut(s) 967
AseI ATTAAT 1 cut(s) 852
Asp718I GGTACC 1 cut(s) 300
AspLEI GCGC 2 cut(s) 135, 922
AspS9I GGNCC 7 cut(s) 4, 85, 109, 400, 421, 610, 658
AsuC2I CCSGG 4 cut(s) 298, 338, 599, 614
AsuHPI GGTGA 6 cut(s) 202, 241, 472, 728, 811, 976
AvaI CYCGRG 2 cut(s) 162, 632
AvaII GGWCC 5 cut(s) 4, 109, 421, 610, 658
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 2 cut(s) 300, 352
BanII GRGCYC 3 cut(s) 96, 169, 680
BauI CACGAG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 3 cut(s) 96, 438, 680
BbvI GCAGC 2 cut(s) 351, 550
BccI CCATC 2 cut(s) 407, 824
BceAI ACGGC 2 cut(s) 140, 340
BciT130I CCWGG 5 cut(s) 83, 107, 113, 130, 1042
BciVI GTATCC 1 cut(s) 327
BcnI CCSGG 4 cut(s) 298, 338, 599, 614
BcoDI GTCTC 3 cut(s) 43, 867, 947
BfaI CTAG 2 cut(s) 278, 662
BfoI RGCGCY 1 cut(s) 136
BfuI GTATCC 1 cut(s) 327
BisI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 564
BlsI GCNGC 6 cut(s) 13, 125, 259, 366, 408, 565
Bme1390I CCNGG 9 cut(s) 83, 107, 113, 130, 298, 338, 599, 614, 1042
Bme18I GGWCC 5 cut(s) 4, 109, 421, 610, 658
BmeRI GACNNNNNGTC 1 cut(s) 790
BmeT110I CYCGRG 2 cut(s) 162, 632
BmgT120I GGNCC 7 cut(s) 4, 85, 109, 400, 421, 610, 658
BmiI GGNNCC 6 cut(s) 6, 127, 302, 354, 612, 659
BmrFI CCNGG 9 cut(s) 83, 107, 113, 130, 298, 338, 599, 614, 1042
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 636
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 288
BplI GAGNNNNNCTC 4 cut(s) 83, 115, 257, 289
BpmI CTGGAG 2 cut(s) 89, 944
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 592, 901
BpuMI CCSGG 4 cut(s) 298, 338, 599, 614
BsaAI YACGTR 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 840
BsaJI CCNNGG 2 cut(s) 121, 1041
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 475, 505
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 310, 337, 409, 619, 633
Bse118I RCCGGY 2 cut(s) 402, 423
Bse1I ACTGG 2 cut(s) 61, 169
BseBI CCWGG 5 cut(s) 83, 107, 113, 130, 1042
BseDI CCNNGG 2 cut(s) 121, 1041
BseGI GGATG 2 cut(s) 418, 835
BseLI CCNNNNNNNGG 6 cut(s) 112, 310, 337, 409, 619, 633
BseMII CTCAG 1 cut(s) 1039
BseNI ACTGG 2 cut(s) 61, 169
BseRI GAGGAG 5 cut(s) 58, 167, 466, 517, 827
BseXI GCAGC 2 cut(s) 351, 550
BseYI CCCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 713
Bsh1236I CGCG 2 cut(s) 123, 260
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 3 cut(s) 86, 116, 402
BshNI GGYRCC 2 cut(s) 300, 352
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 3 cut(s) 96, 438, 680
BsiHKCI CYCGRG 2 cut(s) 162, 632
BsiSI CCGG 6 cut(s) 298, 337, 403, 424, 598, 614
BslFI GGGAC 3 cut(s) 157, 671, 899
BslI CCNNNNNNNGG 6 cut(s) 112, 310, 337, 409, 619, 633
BsmAI GTCTC 3 cut(s) 43, 867, 947
BsmBI CGTCTC 2 cut(s) 43, 947
BsmFI GGGAC 3 cut(s) 157, 671, 899
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 3 cut(s) 86, 116, 402
BsoBI CYCGRG 2 cut(s) 162, 632
Bsp1286I GDGCHC 4 cut(s) 96, 169, 438, 680
Bsp143I GATC 4 cut(s) 46, 267, 390, 900
BspACI CCGC 8 cut(s) 12, 121, 123, 258, 367, 406, 689, 797
BspANI GGCC 3 cut(s) 86, 116, 402
BspCNI CTCAG 1 cut(s) 1038
BspFNI CGCG 2 cut(s) 123, 260
BspLI GGNNCC 6 cut(s) 6, 127, 302, 354, 612, 659
BspPI GGATC 1 cut(s) 41
BspT107I GGYRCC 2 cut(s) 300, 352
BsrFI RCCGGY 2 cut(s) 402, 423
BsrI ACTGG 2 cut(s) 61, 169
BssAI RCCGGY 2 cut(s) 402, 423
BssECI CCNNGG 2 cut(s) 121, 1041
BssMI GATC 4 cut(s) 46, 267, 390, 900
BssNI GRCGYC 1 cut(s) 840
BssSI CACGAG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 5 cut(s) 83, 107, 113, 130, 1042
Bst4CI ACNGT 2 cut(s) 305, 940
Bst6I CTCTTC 1 cut(s) 494
BstACI GRCGYC 1 cut(s) 840
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 4 cut(s) 96, 404, 568, 990
BstDEI CTNAG 4 cut(s) 53, 672, 742, 1025
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 418, 835
BstFNI CGCG 2 cut(s) 123, 260
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 2 cut(s) 135, 922
BstKTI GATC 4 cut(s) 49, 270, 393, 903
BstMAI GTCTC 3 cut(s) 43, 867, 947
BstMBI GATC 4 cut(s) 46, 267, 390, 900
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 7 cut(s) 132, 361, 370, 415, 424, 433, 1046
BstNI CCWGG 5 cut(s) 83, 107, 113, 130, 1042
BstSCI CCNGG 9 cut(s) 81, 105, 111, 128, 296, 336, 597, 612, 1040
BstUI CGCG 2 cut(s) 123, 260
BstV1I GCAGC 2 cut(s) 351, 550
BstV2I GAAGAC 1 cut(s) 288
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 3 cut(s) 86, 116, 402
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 418, 835
Cac8I GCNNGC 4 cut(s) 96, 404, 568, 990
CaiI CAGNNNCTG 2 cut(s) 112, 1032
CfoI GCGC 2 cut(s) 135, 922
Cfr10I RCCGGY 2 cut(s) 402, 423
Cfr13I GGNCC 7 cut(s) 4, 85, 109, 400, 421, 610, 658
Cfr42I CCGCGG 1 cut(s) 124
CseI GACGC 4 cut(s) 230, 249, 964, 1030
Csp6I GTAC 5 cut(s) 301, 328, 430, 637, 877
CviAII CATG 2 cut(s) 772, 1004
CviQI GTAC 5 cut(s) 301, 328, 430, 637, 877
DdeI CTNAG 4 cut(s) 53, 672, 742, 1025
DpnI GATC 4 cut(s) 48, 269, 392, 902
DpnII GATC 4 cut(s) 46, 267, 390, 900
DrdI GACNNNNNNGTC 1 cut(s) 200
DriI GACNNNNNGTC 1 cut(s) 790
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 494
Eam1105I GACNNNNNGTC 1 cut(s) 790
EarI CTCTTC 1 cut(s) 494
Ecl136II GAGCTC 2 cut(s) 94, 678
Eco24I GRGCYC 3 cut(s) 96, 169, 680
Eco47I GGWCC 5 cut(s) 4, 109, 421, 610, 658
Eco53kI GAGCTC 2 cut(s) 94, 678
Eco88I CYCGRG 2 cut(s) 162, 632
EcoICRI GAGCTC 2 cut(s) 94, 678
EcoO109I RGGNCCY 2 cut(s) 109, 658
EcoRII CCWGG 5 cut(s) 81, 105, 111, 128, 1040
EcoT38I GRGCYC 3 cut(s) 96, 169, 680
Esp3I CGTCTC 2 cut(s) 43, 947
FaeI CATG 2 cut(s) 775, 1007
FaiI YATR 9 cut(s) 350, 378, 773, 789, 810, 980, 984, 996, 1005
FaqI GGGAC 3 cut(s) 157, 671, 899
FatI CATG 2 cut(s) 771, 1003
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 564
FokI GGATG 2 cut(s) 425, 842
FriOI GRGCYC 3 cut(s) 96, 169, 680
Fsp4HI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 564
FspBI CTAG 2 cut(s) 278, 662
GlaI GCGC 2 cut(s) 134, 921
GluI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 564
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 2 cut(s) 89, 944
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 3 cut(s) 86, 116, 402
HapII CCGG 6 cut(s) 298, 337, 403, 424, 598, 614
HgaI GACGC 4 cut(s) 230, 249, 964, 1030
HhaI GCGC 2 cut(s) 135, 922
Hin1I GRCGYC 1 cut(s) 840
Hin1II CATG 2 cut(s) 775, 1007
Hin6I GCGC 2 cut(s) 133, 920
HinP1I GCGC 2 cut(s) 133, 920
HinfI GANTC 5 cut(s) 20, 272, 547, 896, 1064
HpaII CCGG 6 cut(s) 298, 337, 403, 424, 598, 614
HphI GGTGA 6 cut(s) 202, 241, 472, 728, 811, 976
Hpy166II GTNNAC 2 cut(s) 205, 328
Hpy188I TCNGA 4 cut(s) 265, 321, 645, 895
Hpy188III TCNNGA 3 cut(s) 40, 143, 1052
Hpy8I GTNNAC 2 cut(s) 205, 328
Hpy99I CGWCG 4 cut(s) 161, 246, 842, 845
HpyAV CCTTC 3 cut(s) 457, 707, 775
HpyCH4III ACNGT 2 cut(s) 305, 940
HpyCH4IV ACGT 4 cut(s) 36, 219, 432, 840
HpyCH4V TGCA 3 cut(s) 649, 694, 819
HpyF10VI GCNNNNNNNGC 7 cut(s) 132, 361, 370, 415, 424, 433, 1046
HpyF3I CTNAG 4 cut(s) 53, 672, 742, 1025
HpySE526I ACGT 4 cut(s) 36, 219, 432, 840
Hsp92I GRCGYC 1 cut(s) 840
Hsp92II CATG 2 cut(s) 775, 1007
HspAI GCGC 2 cut(s) 133, 920
KpnI GGTACC 1 cut(s) 304
KroI GCCGGC 1 cut(s) 402
KroNI GCCGGC 1 cut(s) 404
KspI CCGCGG 1 cut(s) 124
Kzo9I GATC 4 cut(s) 46, 267, 390, 900
LmnI GCTCC 6 cut(s) 131, 140, 299, 668, 834, 1054
Lsp1109I GCAGC 2 cut(s) 351, 550
LweI GCATC 1 cut(s) 636
MaeI CTAG 2 cut(s) 278, 662
MaeII ACGT 4 cut(s) 36, 219, 432, 840
MaeIII GTNAC 1 cut(s) 305
MalI GATC 4 cut(s) 48, 269, 392, 902
MboI GATC 4 cut(s) 46, 267, 390, 900
MboII GAAGA 2 cut(s) 293, 511
MhlI GDGCHC 4 cut(s) 96, 169, 438, 680
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 3 cut(s) 395, 531, 967
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 873, 891
Mox20I TGGCCA 1 cut(s) 116
MroNI GCCGGC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 116
MseI TTAA 5 cut(s) 383, 582, 852, 999, 1014
MslI CAYNNNNRTG 1 cut(s) 644
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 6 cut(s) 298, 337, 403, 424, 598, 614
MspR9I CCNGG 9 cut(s) 83, 107, 113, 130, 298, 338, 599, 614, 1042
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 5 cut(s) 83, 107, 113, 130, 1042
MvnI CGCG 2 cut(s) 123, 260
MwoI GCNNNNNNNGC 7 cut(s) 132, 361, 370, 415, 424, 433, 1046
NaeI GCCGGC 1 cut(s) 404
NciI CCSGG 4 cut(s) 298, 338, 599, 614
NdeII GATC 4 cut(s) 46, 267, 390, 900
NgoMIV GCCGGC 1 cut(s) 402
NlaIII CATG 2 cut(s) 775, 1007
NlaIV GGNNCC 6 cut(s) 6, 127, 302, 354, 612, 659
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 198
PctI GAATGC 1 cut(s) 922
PdiI GCCGGC 1 cut(s) 404
PfeI GAWTC 4 cut(s) 20, 547, 896, 1064
PflFI GACNNNGTC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 6 cut(s) 13, 125, 259, 366, 408, 565
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 433
PpuMI RGGWCCY 2 cut(s) 109, 658
PshBI ATTAAT 1 cut(s) 852
Psp124BI GAGCTC 2 cut(s) 96, 680
Psp5II RGGWCCY 2 cut(s) 109, 658
Psp6I CCWGG 5 cut(s) 81, 105, 111, 128, 1040
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 5 cut(s) 81, 105, 111, 128, 1040
PspN4I GGNNCC 6 cut(s) 6, 127, 302, 354, 612, 659
PspPI GGNCC 7 cut(s) 4, 85, 109, 400, 421, 610, 658
PspPPI RGGWCCY 2 cut(s) 109, 658
PsrI GAACNNNNNNTAC 2 cut(s) 587, 619
PstNI CAGNNNCTG 2 cut(s) 112, 1032
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 5 cut(s) 302, 329, 431, 638, 878
RsaNI GTAC 5 cut(s) 301, 328, 430, 637, 877
RseI CAYNNNNRTG 1 cut(s) 644
SacI GAGCTC 2 cut(s) 96, 680
SacII CCGCGG 1 cut(s) 124
SaqAI TTAA 5 cut(s) 383, 582, 852, 999, 1014
SatI GCNGC 6 cut(s) 12, 124, 258, 365, 407, 564
Sau3AI GATC 4 cut(s) 46, 267, 390, 900
Sau96I GGNCC 7 cut(s) 4, 85, 109, 400, 421, 610, 658
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 9 cut(s) 83, 107, 113, 130, 298, 338, 599, 614, 1042
SduI GDGCHC 4 cut(s) 96, 169, 438, 680
SfaNI GCATC 1 cut(s) 636
Sfr303I CCGCGG 1 cut(s) 124
SgrBI CCGCGG 1 cut(s) 124
SinI GGWCC 5 cut(s) 4, 109, 421, 610, 658
SmiMI CAYNNNNRTG 1 cut(s) 644
SmlI CTYRAG 2 cut(s) 571, 880
SmoI CTYRAG 2 cut(s) 571, 880
Sse9I AATT 3 cut(s) 395, 531, 967
SsiI CCGC 8 cut(s) 12, 121, 123, 258, 367, 406, 689, 797
SspMI CTAG 2 cut(s) 278, 662
SstI GAGCTC 2 cut(s) 96, 680
StyD4I CCNGG 9 cut(s) 81, 105, 111, 128, 296, 336, 597, 612, 1040
TaaI ACNGT 2 cut(s) 305, 940
TaiI ACGT 4 cut(s) 39, 222, 435, 843
TaqI TCGA 4 cut(s) 41, 144, 270, 899
TaqII GACCGA 1 cut(s) 59
TasI AATT 3 cut(s) 395, 531, 967
TatI WGTACW 1 cut(s) 876
TauI GCSGC 4 cut(s) 14, 126, 260, 409
TfiI GAWTC 4 cut(s) 20, 547, 896, 1064
Tru1I TTAA 5 cut(s) 383, 582, 852, 999, 1014
Tru9I TTAA 5 cut(s) 383, 582, 852, 999, 1014
TseI GCWGC 2 cut(s) 364, 563
TspDTI ATGAA 2 cut(s) 530, 536
TspGWI ACGGA 1 cut(s) 623
Tth111I GACNNNGTC 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 5 cut(s) 4, 109, 421, 610, 658
VspI ATTAAT 1 cut(s) 852
XapI RAATTY 1 cut(s) 967
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 2 cut(s) 278, 662
ZraI GACGTC 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.