FvH4_1g21530

Trafficking protein particle complex subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
13508774 .. 13513402
4629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21530.t1

Sequence Viewer

Length: 1077 bp
ATGGACCCACCCACACCCGAATCCCTCGCCCTCTCCACCGCCGACCCCCTAACCTCTCATTTCACCTCCCTCAACGACCTCGCCCAAGAGCTCGCCTCCCTTCAAGACCTCGCCACGCGCGGCTCCTGGCGCTCCATCCTCGACAAGGTCACACGCGCCCGAGCCCAGTCCCTCCTCACCAAGCCCCACGACCACCTCGTCTACTTCACCTACAACGTCCTCGCCCTCACCAAACTACGTCGTTTCACCGACGCCGCCGGCGAGATCGACTCCCTCGAAGACCTCAACAGCCTCCGCTACAAATACGAAGGCTATCCGGATGTCTACCCGGGCCGGGTCGGGTCCATGGTCCCGTTCTCGCTGCGGTGGATGTACGCGTTGATCCCGATGAAATTGGGCCGGCGGCAGGATGGGCTGGACCGCCTCTATGTCCTGCTGGATTTCGTGAGGCGAAAAGTGAAGGAGAAGAGAGAGATTGGGAGTGTTGATGTGTGGAGGAGGAGGGAGATGTTTGTTATGAATGGCATTATCGGGGTTCATTTGAATCAGAAGGAGCTAGCTGCTTGTTTGAGCTTGATCAAGGAGTTATTGAACCGGGATTATACCGATCCGGTTCTTGTTTCGAAGCTGGGGTATATACAGATGCAAATGGGGGATTTAGAGGGAGCGAAAAGCTCCTTTAATGCGGTGCAGGGGATGGTGGAGAAGGAGGAGGGGAGTGAGATGAGGAATTTGGTGAGTAGGAACAAGGCGTTGGTGTTTATGGTGGGGAAGGATTATGTGTCGGCGGTGAGGGAGTATGAGGAGTGCATTGAGAGGGATGGGAGTGATGTGGTGGCGATTAATAACAAGGCGCTTTGTTTGATGTACTTGAGGGACTTGTCGGATTCGATCAAGGTATTGGAGAGTGCGCTGGAGAGGGTTCCTACAGTGGCGCTGAATGAGACGCTTGTGGTGAATTTGTGTAGTATGTATGAGCTGGCTTATGTTAATCATGGGGATGTTAAGAGGACGCTGAGTAGCTGGATTGCGAGGGTTGCTCCGGATGATTTTGATACGGCTTCTACGAGGATTTGA

Protein Analysis

359

Amino Acids

40.59

Weight (kDa)

6.05

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccI GTMKAC 2 cut(s) 201, 324
AccII CGCG 4 cut(s) 118, 120, 156, 377
AccIII TCCGGA 2 cut(s) 316, 1042
AciI CCGC 9 cut(s) 39, 120, 255, 295, 364, 403, 421, 686, 788
AclWI GGATC 2 cut(s) 376, 602
AcsI RAATTY 2 cut(s) 730, 958
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 2 cut(s) 374, 869
AfiI CCNNNNNNNGG 3 cut(s) 145, 334, 406
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 3 cut(s) 104, 544, 592
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AluBI AGCT 8 cut(s) 91, 556, 560, 573, 628, 675, 979, 1023
AluI AGCT 8 cut(s) 91, 556, 560, 573, 628, 675, 979, 1023
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 938
AlwI GGATC 2 cut(s) 376, 602
Ama87I CYCGRG 2 cut(s) 159, 328
Aor13HI TCCGGA 2 cut(s) 316, 1042
AoxI GGCC 2 cut(s) 331, 397
ApeKI GCWGC 2 cut(s) 361, 560
ApoI RAATTY 2 cut(s) 730, 958
AseI ATTAAT 1 cut(s) 843
AspLEI GCGC 6 cut(s) 120, 132, 158, 856, 913, 937
AspS9I GGNCC 6 cut(s) 4, 331, 342, 349, 397, 418
AsuC2I CCSGG 4 cut(s) 329, 330, 335, 596
AsuHPI GGTGA 8 cut(s) 55, 169, 199, 220, 238, 748, 802, 967
AsuII TTCGAA 1 cut(s) 623
AsuNHI GCTAGC 1 cut(s) 556
AvaI CYCGRG 2 cut(s) 159, 328
AvaII GGWCC 4 cut(s) 4, 342, 349, 418
BanII GRGCYC 2 cut(s) 93, 166
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 348, 547
BccI CCATC 4 cut(s) 143, 404, 691, 815
BceAI ACGGC 1 cut(s) 1074
BciT130I CCWGG 1 cut(s) 127
BclI TGATCA 1 cut(s) 576
BcnI CCSGG 4 cut(s) 329, 330, 335, 596
BcoDI GTCTC 1 cut(s) 938
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 1 cut(s) 927
BfoI RGCGCY 3 cut(s) 133, 857, 938
BisI GCNGC 5 cut(s) 121, 255, 362, 404, 561
BlsI GCNGC 5 cut(s) 122, 256, 363, 405, 562
Bme1390I CCNGG 5 cut(s) 127, 329, 330, 335, 596
Bme18I GGWCC 4 cut(s) 4, 342, 349, 418
BmeT110I CYCGRG 2 cut(s) 159, 328
BmgT120I GGNCC 6 cut(s) 4, 331, 342, 349, 397, 418
BmiI GGNNCC 5 cut(s) 6, 124, 343, 351, 924
BmrFI CCNGG 5 cut(s) 127, 329, 330, 335, 596
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 633
BmtI GCTAGC 1 cut(s) 560
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 285
BplI GAGNNNNNCTC 6 cut(s) 80, 112, 254, 286, 1024, 1056
BpmI CTGGAG 1 cut(s) 935
Bpu14I TTCGAA 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 892
BpuMI CCSGG 4 cut(s) 329, 330, 335, 596
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 328, 345
BsaWI WCCGGW 3 cut(s) 316, 610, 1042
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 334, 406
Bse118I RCCGGY 2 cut(s) 257, 399
Bse1I ACTGG 1 cut(s) 166
BseAI TCCGGA 2 cut(s) 316, 1042
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 328, 345
BseGI GGATG 8 cut(s) 135, 325, 375, 415, 702, 826, 1006, 1051
BseLI CCNNNNNNNGG 3 cut(s) 145, 334, 406
BseMII CTCAG 1 cut(s) 1007
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 5 cut(s) 164, 511, 514, 725, 818
BseXI GCAGC 2 cut(s) 348, 547
BseYI CCCAGC 1 cut(s) 628
BsgI GTGCAG 1 cut(s) 710
Bsh1236I CGCG 4 cut(s) 118, 120, 156, 377
BshFI GGCC 2 cut(s) 333, 399
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 2 cut(s) 159, 328
BsiSI CCGG 8 cut(s) 258, 317, 329, 334, 400, 595, 611, 1043
BslFI GGGAC 3 cut(s) 154, 335, 890
BslI CCNNNNNNNGG 3 cut(s) 145, 334, 406
BsmAI GTCTC 1 cut(s) 938
BsmBI CGTCTC 1 cut(s) 938
BsmFI GGGAC 3 cut(s) 154, 335, 890
BsnI GGCC 2 cut(s) 333, 399
BsoBI CYCGRG 2 cut(s) 159, 328
Bsp119I TTCGAA 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 93, 166
Bsp13I TCCGGA 2 cut(s) 316, 1042
Bsp143I GATC 5 cut(s) 264, 381, 576, 607, 891
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 9 cut(s) 39, 120, 255, 295, 364, 403, 421, 686, 788
BspANI GGCC 2 cut(s) 333, 399
BspCNI CTCAG 1 cut(s) 1008
BspEI TCCGGA 2 cut(s) 316, 1042
BspFNI CGCG 4 cut(s) 118, 120, 156, 377
BspLI GGNNCC 5 cut(s) 6, 124, 343, 351, 924
BspOI GCTAGC 1 cut(s) 560
BspPI GGATC 2 cut(s) 376, 602
BspT104I TTCGAA 1 cut(s) 623
BsrFI RCCGGY 2 cut(s) 257, 399
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 2 cut(s) 257, 399
BssECI CCNNGG 2 cut(s) 328, 345
BssMI GATC 5 cut(s) 264, 381, 576, 607, 891
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 931
Bst6I CTCTTC 1 cut(s) 461
BstACI GRCGYC 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 5 cut(s) 93, 259, 401, 558, 981
BstDEI CTNAG 1 cut(s) 1016
BstDSI CCRYGG 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 8 cut(s) 135, 325, 375, 415, 702, 826, 1006, 1051
BstFNI CGCG 4 cut(s) 118, 120, 156, 377
BstH2I RGCGCY 3 cut(s) 133, 857, 938
BstHHI GCGC 6 cut(s) 120, 132, 158, 856, 913, 937
BstKTI GATC 5 cut(s) 267, 384, 579, 610, 894
BstMAI GTCTC 1 cut(s) 938
BstMBI GATC 5 cut(s) 264, 381, 576, 607, 891
BstMWI GCNNNNNNNGC 3 cut(s) 129, 412, 1037
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 5 cut(s) 125, 327, 328, 333, 594
BstSFI CTRYAG 1 cut(s) 927
BstUI CGCG 4 cut(s) 118, 120, 156, 377
BstV1I GCAGC 2 cut(s) 348, 547
BstV2I GAAGAC 1 cut(s) 285
BsuRI GGCC 2 cut(s) 333, 399
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 8 cut(s) 135, 325, 375, 415, 702, 826, 1006, 1051
BtsIMutI CAGTG 1 cut(s) 936
Cac8I GCNNGC 5 cut(s) 93, 259, 401, 558, 981
CfoI GCGC 6 cut(s) 120, 132, 158, 856, 913, 937
Cfr10I RCCGGY 2 cut(s) 257, 399
Cfr13I GGNCC 6 cut(s) 4, 331, 342, 349, 397, 418
Cfr9I CCCGGG 1 cut(s) 328
CseI GACGC 3 cut(s) 260, 955, 1021
Csp6I GTAC 2 cut(s) 373, 868
CviAII CATG 2 cut(s) 346, 995
CviQI GTAC 2 cut(s) 373, 868
DdeI CTNAG 1 cut(s) 1016
DpnI GATC 5 cut(s) 266, 383, 578, 609, 893
DpnII GATC 5 cut(s) 264, 381, 576, 607, 891
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 345
Eco24I GRGCYC 2 cut(s) 93, 166
Eco47I GGWCC 4 cut(s) 4, 342, 349, 418
Eco53kI GAGCTC 1 cut(s) 91
Eco88I CYCGRG 2 cut(s) 159, 328
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 2 cut(s) 93, 166
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 938
FaeI CATG 2 cut(s) 349, 998
FaqI GGGAC 3 cut(s) 154, 335, 890
FatI CATG 2 cut(s) 345, 994
FbaI TGATCA 1 cut(s) 576
FblI GTMKAC 2 cut(s) 201, 324
Fnu4HI GCNGC 5 cut(s) 121, 255, 362, 404, 561
FokI GGATG 8 cut(s) 122, 332, 382, 422, 709, 833, 1013, 1058
FriOI GRGCYC 2 cut(s) 93, 166
Fsp4HI GCNGC 5 cut(s) 121, 255, 362, 404, 561
FspBI CTAG 1 cut(s) 557
GlaI GCGC 6 cut(s) 119, 131, 157, 855, 912, 936
GluI GCNGC 5 cut(s) 121, 255, 362, 404, 561
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 1 cut(s) 935
HaeII RGCGCY 3 cut(s) 133, 857, 938
HaeIII GGCC 2 cut(s) 333, 399
HapII CCGG 8 cut(s) 258, 317, 329, 334, 400, 595, 611, 1043
HgaI GACGC 3 cut(s) 260, 955, 1021
HhaI GCGC 6 cut(s) 120, 132, 158, 856, 913, 937
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 2 cut(s) 349, 998
Hin6I GCGC 6 cut(s) 118, 130, 156, 854, 911, 935
HinP1I GCGC 6 cut(s) 118, 130, 156, 854, 911, 935
HinfI GANTC 4 cut(s) 20, 269, 544, 887
HpaII CCGG 8 cut(s) 258, 317, 329, 334, 400, 595, 611, 1043
HphI GGTGA 8 cut(s) 55, 169, 199, 220, 238, 748, 802, 967
Hpy166II GTNNAC 2 cut(s) 202, 325
Hpy188I TCNGA 2 cut(s) 549, 886
Hpy188III TCNNGA 5 cut(s) 104, 317, 385, 445, 1043
Hpy8I GTNNAC 2 cut(s) 202, 325
Hpy99I CGWCG 2 cut(s) 243, 254
HpyAV CCTTC 6 cut(s) 110, 302, 454, 544, 700, 766
HpyCH4III ACNGT 1 cut(s) 931
HpyCH4IV ACGT 2 cut(s) 216, 238
HpyCH4V TGCA 3 cut(s) 646, 691, 810
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 412, 1037
HpyF3I CTNAG 1 cut(s) 1016
HpySE526I ACGT 2 cut(s) 216, 238
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 2 cut(s) 349, 998
HspAI GCGC 6 cut(s) 118, 130, 156, 854, 911, 935
Kpn2I TCCGGA 2 cut(s) 316, 1042
KroI GCCGGC 2 cut(s) 257, 399
KroNI GCCGGC 2 cut(s) 259, 401
Ksp22I TGATCA 1 cut(s) 576
Kzo9I GATC 5 cut(s) 264, 381, 576, 607, 891
LmnI GCTCC 6 cut(s) 128, 137, 553, 665, 680, 1045
Lsp1109I GCAGC 2 cut(s) 348, 547
LweI GCATC 1 cut(s) 633
MaeI CTAG 1 cut(s) 557
MaeII ACGT 2 cut(s) 216, 238
MaeIII GTNAC 1 cut(s) 148
MalI GATC 5 cut(s) 266, 383, 578, 609, 893
MboI GATC 5 cut(s) 264, 381, 576, 607, 891
MboII GAAGA 2 cut(s) 290, 478
MhlI GDGCHC 2 cut(s) 93, 166
MluCI AATT 3 cut(s) 392, 730, 958
MluI ACGCGT 1 cut(s) 375
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 864
MreI CGCCGGCG 1 cut(s) 257
MroI TCCGGA 2 cut(s) 316, 1042
MroNI GCCGGC 2 cut(s) 257, 399
MseI TTAA 4 cut(s) 681, 843, 990, 1005
MslI CAYNNNNRTG 1 cut(s) 999
MspI CCGG 8 cut(s) 258, 317, 329, 334, 400, 595, 611, 1043
MspR9I CCNGG 5 cut(s) 127, 329, 330, 335, 596
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 4 cut(s) 118, 120, 156, 377
MwoI GCNNNNNNNGC 3 cut(s) 129, 412, 1037
NaeI GCCGGC 2 cut(s) 259, 401
NciI CCSGG 4 cut(s) 329, 330, 335, 596
NcoI CCATGG 1 cut(s) 345
NdeII GATC 5 cut(s) 264, 381, 576, 607, 891
NgoMIV GCCGGC 2 cut(s) 257, 399
NheI GCTAGC 1 cut(s) 556
NlaIII CATG 2 cut(s) 349, 998
NlaIV GGNNCC 5 cut(s) 6, 124, 343, 351, 924
NmuCI GTSAC 1 cut(s) 148
NspV TTCGAA 1 cut(s) 623
PcsI WCGNNNNNNNCGW 4 cut(s) 195, 258, 273, 1064
PdiI GCCGGC 2 cut(s) 259, 401
PfeI GAWTC 3 cut(s) 20, 544, 887
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 5 cut(s) 122, 256, 363, 405, 562
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 5 cut(s) 6, 124, 343, 351, 924
PspPI GGNCC 6 cut(s) 4, 331, 342, 349, 397, 418
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 2 cut(s) 374, 869
RsaNI GTAC 2 cut(s) 373, 868
RseI CAYNNNNRTG 1 cut(s) 999
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 4 cut(s) 681, 843, 990, 1005
SatI GCNGC 5 cut(s) 121, 255, 362, 404, 561
Sau3AI GATC 5 cut(s) 264, 381, 576, 607, 891
Sau96I GGNCC 6 cut(s) 4, 331, 342, 349, 397, 418
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 5 cut(s) 127, 329, 330, 335, 596
SduI GDGCHC 2 cut(s) 93, 166
SfaNI GCATC 1 cut(s) 633
SfcI CTRYAG 1 cut(s) 927
SfuI TTCGAA 1 cut(s) 623
SgrAI CRCCGGYG 1 cut(s) 257
SinI GGWCC 4 cut(s) 4, 342, 349, 418
SmaI CCCGGG 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 999
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
Sse9I AATT 3 cut(s) 392, 730, 958
SsiI CCGC 9 cut(s) 39, 120, 255, 295, 364, 403, 421, 686, 788
SspMI CTAG 1 cut(s) 557
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 5 cut(s) 125, 327, 328, 333, 594
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 931
TaiI ACGT 2 cut(s) 219, 241
TaqI TCGA 5 cut(s) 141, 267, 276, 623, 890
TasI AATT 3 cut(s) 392, 730, 958
TatI WGTACW 1 cut(s) 867
TauI GCSGC 3 cut(s) 123, 257, 406
TfiI GAWTC 3 cut(s) 20, 544, 887
Tru1I TTAA 4 cut(s) 681, 843, 990, 1005
Tru9I TTAA 4 cut(s) 681, 843, 990, 1005
TscAI CASTG 1 cut(s) 936
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 361, 560
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 404, 527, 533
TspMI CCCGGG 1 cut(s) 328
TspRI CASTG 1 cut(s) 936
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 4 cut(s) 4, 342, 349, 418
VspI ATTAAT 1 cut(s) 843
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 2 cut(s) 730, 958
XmaI CCCGGG 1 cut(s) 328
XmiI GTMKAC 2 cut(s) 201, 324
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.