Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014359

Physical Location & Seq

Genomic Coordinates Reverse (-)

147416 .. 149495

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGAGCTTCTTGATTCCTAATAGAGGAGTAGGAGGAACCAAGATTCCTCTCTCCATCATCGTTCTCGTTCTTTGTGGTTTCATGTTCTTCATTCTCTTATACACTGAAAGAATCAGCTTGTTGTCTTCTTCTTCCTCTTCGTCTTCATCTTTCTTCAAGCTAAAGTCTTGTCCGAGGAAAGATGTTAGCTCGAAACCTAAGGAGAAAATTCGAAAGGAAAGATCAGAGATATTGGAAGTGCTTGACGACAGGTTCGAATTCGATCCCGAAGAGTGTAACGTTGCAGCAGGGAAATGGGTTTACAATAGCTCAATTGAACCACTCTACACCGATAGATCATGTCCATACATCGATCGTCAATTCTCTTGTATGAAAAACGGACAGCCAGAAACTGATTATCTTCGGTGGGAATGGCAGCCTGATGACTGTACAATTCCACGATTTAGTCCGAAGTTAGCAATGAACAAACTCAGAGGAAAAAGACTACTTTTTGTGGGAGATTCGTTGCAACGAAGCCAATGGGAATCGTTCGTGTGTTTGGTGGAATCAATAATACCCGAAGGAGAAAAATCAATGAAGCGTAGCCAAAAATACTTTGTATTTAAAGCAAAGGAATACAATGCGACTATAGAGTTCTATTGGGCACCGTATATCGTCGAATCAAACACAGATATACCTGTGATTTCGGATCCAAAGAAACGGATAGTGAAAGTGGACTCAGTGAAAGATCGAGCTAAGTTTTGGGAAGGAGCTGATATTTTGGTTTTCAACACTTATGTTTGGTGGATGAGTGGTCTCCGCATGAAAGCTCTGTGGGGTTCTTTCGGAAATGGAGAGAGTGGTGCAGAGGCACTAGACACACAAGTGGCTTACAGGCTAGGACTCAAGACATGGGCTAATTGGGTAGACTCCACCGTTGACCCTAATAAGACCAGAGTCTTCTTCACCACCATGTCTCCTACTCATACTAGAAGTGCGGATTGGGGAAAGCCAAACGGCACGAAGTGTTTCAACGAGACGAAACCGATAAAAGATAAGAAGTTTTGGGGAACAGGCTCTAACAAGCAGATGATGAAAGTAGTGTCAAGCGTGATAAAGCACATGACTACGCATGTGACAGTCATCAACATCACGCAGCTCTCTGAGTATCGCATCGACGCTCACACATCAGTTTACACCGAGACAGGTGGCAAGATCCTAACCGCTGAGCAGAGGGCTGATCCAATGCATCACGCTGATTGTATACATTGGTGTTTACCTGGACTACCCGATACATGGAATCGGATCCTATTGGCTCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009827 GO:0009987 GO:0010383 GO:0010393 GO:0010410 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042545 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045491 GO:0045492 GO:0051273 GO:0051274 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

434

Amino Acids

49.83

Weight (kDa)

8.97

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	34 - 87	2.4e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	89 - 376	3.4e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01360 AT5G01360
fragaria_vesca	FvH4_6g11230 FvH4_6g11230
malus_domestica	MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica	Prupe.6G279700_v2.0.a1
pyrus_communis	pycom04g14210 pycom12g16280
rosa_chinensis	RchiOBHm_Chr3g0462741
rosa_laevigata	RLG00000024836
rosa_multiflora	Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii	Rroxscaffold_6G00417240
rosa_rugosa	Rorug03G0058900
rosa_samantha	Rh3DG122300
rosa_wichuraiana	Rw3G009900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccI	GTMKAC	2 cut(s)	906, 1243
AciI	CCGC	3 cut(s)	799, 977, 1203
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	7 cut(s)	257, 683, 696, 1189, 1214, 1279, 1292
AcsI	RAATTY	2 cut(s)	207, 257
AdeI	CACNNNGTG	1 cut(s)	1005
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	2 cut(s)	23, 1275
AgsI	TTSAA	4 cut(s)	157, 317, 769, 1012
AjnI	CCWGG	1 cut(s)	1258
AjuI	GAANNNNNNNTTGG	2 cut(s)	964, 996
AleI	CACNNNNGTG	1 cut(s)	863
AloI	GAACNNNNNNTCC	2 cut(s)	28, 60
AluBI	AGCT	9 cut(s)	6, 117, 160, 189, 309, 734, 752, 809, 1138
AluI	AGCT	9 cut(s)	6, 117, 160, 189, 309, 734, 752, 809, 1138
Alw26I	GTCTC	4 cut(s)	800, 960, 1010, 1175
AlwI	GGATC	7 cut(s)	257, 683, 696, 1189, 1214, 1279, 1292
AlwNI	CAGNNNCTG	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	284, 415, 1135
ApoI	RAATTY	2 cut(s)	207, 257
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	1007
AsuHPI	GGTGA	1 cut(s)	937
AsuII	TTCGAA	2 cut(s)	211, 255
AxyI	CCTNAGG	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	646
BamHI	GGATCC	2 cut(s)	688, 1284
BanI	GGYRCC	1 cut(s)	643
BbsI	GAAGAC	3 cut(s)	117, 135, 931
BbvI	GCAGC	3 cut(s)	296, 427, 1147
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	1012
BciT130I	CCWGG	1 cut(s)	1260
BcoDI	GTCTC	4 cut(s)	800, 960, 1010, 1175
BfaI	CTAG	3 cut(s)	854, 878, 969
BfmI	CTRYAG	1 cut(s)	627
BisI	GCNGC	3 cut(s)	285, 416, 1136
BlpI	GCTNAGC	1 cut(s)	1206
BlsI	GCNGC	3 cut(s)	286, 417, 1137
Bme1390I	CCNGG	1 cut(s)	1260
BmiI	GGNNCC	4 cut(s)	37, 645, 690, 1286
BmrFI	CCNGG	1 cut(s)	1260
BmsI	GCATC	2 cut(s)	1161, 1237
BoxI	GACNNNNGTC	1 cut(s)	935
BpiI	GAAGAC	3 cut(s)	117, 135, 931
Bpu1102I	GCTNAGC	1 cut(s)	1206
Bpu14I	TTCGAA	2 cut(s)	211, 255
BpuEI	CTTGAG	1 cut(s)	869
Bsa29I	ATCGAT	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	940, 970
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 1275
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	1260
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	792
BseLI	CCNNNNNNNGG	2 cut(s)	23, 1275
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	4 cut(s)	484, 732, 1134, 1197
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	646
BseXI	GCAGC	3 cut(s)	296, 427, 1147
BsgI	GTGCAG	1 cut(s)	864
Bsh1285I	CGRYCG	1 cut(s)	355
BshNI	GGYRCC	1 cut(s)	643
BshVI	ATCGAT	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	23, 1275
BsmAI	GTCTC	4 cut(s)	800, 960, 1010, 1175
BsmBI	CGTCTC	1 cut(s)	1010
Bso31I	GGTCTC	1 cut(s)	800
Bsp119I	TTCGAA	2 cut(s)	211, 255
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	428
Bsp143I	GATC	9 cut(s)	221, 262, 335, 352, 688, 727, 1194, 1219, 1284
Bsp1720I	GCTNAGC	1 cut(s)	1206
BspACI	CCGC	3 cut(s)	799, 977, 1203
BspCNI	CTCAG	4 cut(s)	483, 731, 1135, 1198
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	4 cut(s)	37, 645, 690, 1286
BspPI	GGATC	7 cut(s)	257, 683, 696, 1189, 1214, 1279, 1292
BspT104I	TTCGAA	2 cut(s)	211, 255
BspT107I	GGYRCC	1 cut(s)	643
BspTNI	GGTCTC	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	9 cut(s)	221, 262, 335, 352, 688, 727, 1194, 1219, 1284
BssNAI	GTATAC	1 cut(s)	1244
Bst1107I	GTATAC	1 cut(s)	1244
Bst2UI	CCWGG	1 cut(s)	1260
Bst4CI	ACNGT	4 cut(s)	428, 648, 916, 1120
Bst6I	CTCTTC	2 cut(s)	142, 264
BstAUI	TGTACA	1 cut(s)	428
BstBI	TTCGAA	2 cut(s)	211, 255
BstDEI	CTNAG	6 cut(s)	198, 470, 718, 735, 1143, 1206
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	792
BstKTI	GATC	9 cut(s)	224, 265, 338, 355, 691, 730, 1197, 1222, 1287
BstMAI	GTCTC	4 cut(s)	800, 960, 1010, 1175
BstMBI	GATC	9 cut(s)	221, 262, 335, 352, 688, 727, 1194, 1219, 1284
BstMCI	CGRYCG	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	1260
BstNSI	RCATGY	1 cut(s)	1115
BstPAI	GACNNNNGTC	1 cut(s)	935
BstSCI	CCNGG	1 cut(s)	1258
BstSFI	CTRYAG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	646
BstV1I	GCAGC	3 cut(s)	296, 427, 1147
BstV2I	GAAGAC	3 cut(s)	117, 135, 931
BstX2I	RGATCY	3 cut(s)	688, 1194, 1284
BstYI	RGATCY	3 cut(s)	688, 1194, 1284
BstZ17I	GTATAC	1 cut(s)	1244
Bsu15I	ATCGAT	1 cut(s)	351
Bsu36I	CCTNAGG	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	792
BtsIMutI	CAGTG	2 cut(s)	102, 726
CaiI	CAGNNNCTG	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	1166
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	8 cut(s)	82, 339, 802, 891, 952, 1102, 1112, 1275
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	6 cut(s)	198, 470, 718, 735, 1143, 1206
DpnI	GATC	9 cut(s)	223, 264, 337, 354, 690, 729, 1196, 1221, 1286
DpnII	GATC	9 cut(s)	221, 262, 335, 352, 688, 727, 1194, 1219, 1284
DraI	TTTAAA	1 cut(s)	604
DraIII	CACNNNGTG	1 cut(s)	1005
Eam1104I	CTCTTC	2 cut(s)	142, 264
EarI	CTCTTC	2 cut(s)	142, 264
Eco31I	GGTCTC	1 cut(s)	800
Eco81I	CCTNAGG	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	1258
EcoT22I	ATGCAT	1 cut(s)	1230
Esp3I	CGTCTC	1 cut(s)	1010
FaeI	CATG	8 cut(s)	85, 342, 805, 894, 955, 1105, 1115, 1278
FatI	CATG	8 cut(s)	81, 338, 801, 890, 951, 1101, 1111, 1274
FblI	GTMKAC	2 cut(s)	906, 1243
Fnu4HI	GCNGC	3 cut(s)	285, 416, 1136
FokI	GGATG	1 cut(s)	799
Fsp4HI	GCNGC	3 cut(s)	285, 416, 1136
FspBI	CTAG	3 cut(s)	854, 878, 969
GluI	GCNGC	3 cut(s)	285, 416, 1136
HgaI	GACGC	1 cut(s)	1166
Hin1II	CATG	8 cut(s)	85, 342, 805, 894, 955, 1105, 1115, 1278
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HphI	GGTGA	1 cut(s)	937
Hpy166II	GTNNAC	7 cut(s)	301, 715, 907, 919, 1174, 1244, 1256
Hpy188I	TCNGA	8 cut(s)	174, 226, 450, 473, 688, 827, 1144, 1284
Hpy188III	TCNNGA	3 cut(s)	10, 266, 886
Hpy8I	GTNNAC	7 cut(s)	301, 715, 907, 919, 1174, 1244, 1256
Hpy99I	CGWCG	2 cut(s)	659, 1160
HpyAV	CCTTC	2 cut(s)	554, 740
HpyCH4III	ACNGT	4 cut(s)	428, 648, 916, 1120
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	284, 508, 845, 1228
HpyF3I	CTNAG	6 cut(s)	198, 470, 718, 735, 1143, 1206
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	8 cut(s)	85, 342, 805, 894, 955, 1105, 1115, 1278
Kzo9I	GATC	9 cut(s)	221, 262, 335, 352, 688, 727, 1194, 1219, 1284
LmnI	GCTCC	1 cut(s)	749
Lsp1109I	GCAGC	3 cut(s)	296, 427, 1147
LweI	GCATC	2 cut(s)	1161, 1237
MaeI	CTAG	3 cut(s)	854, 878, 969
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	275, 1114
MalI	GATC	9 cut(s)	223, 264, 337, 354, 690, 729, 1196, 1221, 1286
MboI	GATC	9 cut(s)	221, 262, 335, 352, 688, 727, 1194, 1219, 1284
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	3 cut(s)	688, 1194, 1284
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	6 cut(s)	207, 257, 312, 359, 432, 898
MlyI	GAGTC	4 cut(s)	710, 876, 902, 945
MnlI	CCTC	8 cut(s)	17, 26, 57, 145, 168, 467, 841, 1206
Mph1103I	ATGCAT	1 cut(s)	1230
MroXI	GAANNNNTTC	1 cut(s)	1007
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	2 cut(s)	863, 950
MspA1I	CMGCKG	1 cut(s)	1205
MspR9I	CCNGG	1 cut(s)	1260
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	1260
NdeII	GATC	9 cut(s)	221, 262, 335, 352, 688, 727, 1194, 1219, 1284
NlaIII	CATG	8 cut(s)	85, 342, 805, 894, 955, 1105, 1115, 1278
NlaIV	GGNNCC	4 cut(s)	37, 645, 690, 1286
NmuCI	GTSAC	1 cut(s)	1114
NsiI	ATGCAT	1 cut(s)	1230
NspI	RCATGY	1 cut(s)	1115
NspV	TTCGAA	2 cut(s)	211, 255
OliI	CACNNNNGTG	1 cut(s)	863
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	1007
PfeI	GAWTC	8 cut(s)	13, 43, 111, 500, 524, 545, 659, 1279
PkrI	GCNGC	3 cut(s)	286, 417, 1137
Ple19I	CGATCG	1 cut(s)	355
PleI	GAGTC	4 cut(s)	710, 876, 902, 944
PpsI	GAGTC	4 cut(s)	710, 876, 902, 944
PshAI	GACNNNNGTC	1 cut(s)	935
Psp1406I	AACGTT	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	1258
PspGI	CCWGG	1 cut(s)	1258
PspN4I	GGNNCC	4 cut(s)	37, 645, 690, 1286
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	3 cut(s)	688, 1194, 1284
PvuI	CGATCG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	863, 950
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	3 cut(s)	285, 416, 1136
Sau3AI	GATC	9 cut(s)	221, 262, 335, 352, 688, 727, 1194, 1219, 1284
SchI	GAGTC	4 cut(s)	710, 876, 902, 945
ScrFI	CCNGG	1 cut(s)	1260
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	1161, 1237
SfcI	CTRYAG	1 cut(s)	627
SfuI	TTCGAA	2 cut(s)	211, 255
SmiMI	CAYNNNNRTG	2 cut(s)	863, 950
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	6 cut(s)	207, 257, 312, 359, 432, 898
SsiI	CCGC	3 cut(s)	799, 977, 1203
SspMI	CTAG	3 cut(s)	854, 878, 969
StyD4I	CCNGG	1 cut(s)	1258
TaaI	ACNGT	4 cut(s)	428, 648, 916, 1120
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	8 cut(s)	191, 211, 255, 261, 351, 657, 730, 1155
TasI	AATT	6 cut(s)	207, 257, 312, 359, 432, 898
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	8 cut(s)	13, 43, 111, 500, 524, 545, 659, 1279
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	109, 726
TseFI	GTSAC	1 cut(s)	1114
TseI	GCWGC	3 cut(s)	284, 415, 1135
Tsp45I	GTSAC	1 cut(s)	1114
TspDTI	ATGAA	8 cut(s)	70, 79, 135, 386, 476, 590, 818, 1088
TspGWI	ACGGA	2 cut(s)	393, 715
TspRI	CASTG	2 cut(s)	109, 726
XagI	CCTNNNNNAGG	1 cut(s)	21
XapI	RAATTY	2 cut(s)	207, 257
XceI	RCATGY	1 cut(s)	1115
XmiI	GTMKAC	2 cut(s)	906, 1243
XmnI	GAANNNNTTC	1 cut(s)	1007
XspI	CTAG	3 cut(s)	854, 878, 969
Zsp2I	ATGCAT	1 cut(s)	1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.