MD12G1171500.v1.1

Protein trichome birefringence-like 3

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
25205465 .. 25207781
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1171500.v1.1.491

Sequence Viewer

Length: 1299 bp
ATGAGCTTCCCTCCATCTACTGCATCTGGCGCAATGAAAGCGTTTCGCGGAAAGCTACATTTTCCTATTATCATGGTCTGCGCTATCGCCTTCATCAGTCTCCTCTACACCGAACGGATTAGCATCATTCTTTCCTCCAACCCTTTTTTCAAAGTTAAATCATGTTCCAAAACCAATGCCACTTCGAAAAATAAAAATAGAAATGCTACACTGGATAAGTTGAGGGATACCATATTAGATGATAGGTTTGAGTTCGACCCTGAGGAGTGCAGTATTGAGAACGGAAAGTGGGTGTTCAACCGTTCGATCAAGCCTCTTTACTCTGATAGAAGTTGCCCGTATCTTGATAGGCAAGTTTCATGTGTCAAGAATGGACGTCCGGATTCTGGCTATCGCTACTGGCAATGGCAGATCCAAGATTGCACATTGCCAAGATTTAATCCAGAAGTTGTTCTTAAGAAACTTAGCGGAAAGAGGCTACTTTTTGTTGGGGATTCTTTGCAAAGAGGTCAATGGCAATCTCTAGTCTGTATGGTTGAATCCATCATACCAGAGGACCAAAAGTCCATGCGACGCGGGCACTCTCACACAGTCTTCAGAGCCAAGGAGTATAATGCAAGTATTGAATTCTACTGGGCTCCATTTCTCGTTGATTCCAATTCTGATGAACATATAATCGGAAATCCAAAGGAAAGAATACTAAAAGTGGATTCAGTTGCCAAGCATGCCAAATACTGGACAGGAGTTGACATCCTTGTGTTCAACACTTACGTTTGGTGGATGAGCGGCTACACGATCAAATCATACTGGGGCTCATTTCCAAACGGAGAAGAAGGGTACGAAGAATTGGAAGCACCTGCTGCCTACAGAATAGCATTGAAGACATGGGCTAACTGGGTCGACACAAATGTGAATCCGAACAAGACCCGTGTTTTTTTCACTACTATGTCCCCTACACACATGAGAAGTGCAGACTGGGAAAATCCAGATGGGATGCGATGCTTCAACGAAACAAAGCCATACATGAAAAAGGGATTCTGGGGAACTGGTTCGGACAAGAAGATCATGCGCGTGGTGTCCGAAGTAATAAACAAAATGAAATGTCCGGTTTCAGTACTCAATGTAACGCAGATGTCAAATTACAGAGTTGATGCTCACACAAAAGTGTACACCGAAACCGGAGGCAATGTACTAACTGATGAGCAAAAGGCTGATGTGCTGCACAATTCAGATTGCATACATTGGTGCCTTCCTGGAGTTCCAGACACATGGAATGAAATTTTTGTGGCACATTTGTAG

Protein Analysis

433

Amino Acids

49.77

Weight (kDa)

8.79

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 88 - 141 1.2e-18 PMR5 N terminal Domain
PC-Esterase PF13839 143 - 430 7e-95 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01360 AT5G01360
fragaria_vesca FvH4_6g11230 FvH4_6g11230
malus_domestica MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica Prupe.6G279700_v2.0.a1
pyrus_communis pycom04g14210 pycom12g16280
rosa_chinensis RchiOBHm_Chr3g0462741
rosa_laevigata RLG00000024836
rosa_multiflora Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii Rroxscaffold_6G00417240
rosa_rugosa Rorug03G0058900
rosa_samantha Rh3DG122300
rosa_wichuraiana Rw3G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 865
AatII GACGTC 1 cut(s) 379
Acc36I ACCTGC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 1245
AccB7I CCANNNNNTGG 1 cut(s) 735
AccBSI CCGCTC 1 cut(s) 786
AccI GTMKAC 1 cut(s) 900
AccII CGCG 3 cut(s) 48, 576, 1071
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 4 cut(s) 48, 468, 576, 786
AclWI GGATC 1 cut(s) 406
AcsI RAATTY 2 cut(s) 626, 1278
AcuI CTGAAG 1 cut(s) 580
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 4 cut(s) 839, 1116, 1169, 1191
AfiI CCNNNNNNNGG 2 cut(s) 386, 735
AflII CTTAAG 1 cut(s) 455
AgsI TTSAA 7 cut(s) 151, 298, 539, 626, 763, 880, 1006
AhdI GACNNNNNGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 1252
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AleI CACNNNNGTG 2 cut(s) 908, 1163
AluBI AGCT 2 cut(s) 6, 55
AluI AGCT 2 cut(s) 6, 55
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 406
Aor13HI TCCGGA 1 cut(s) 379
ApeKI GCWGC 2 cut(s) 860, 1219
ApoI RAATTY 2 cut(s) 626, 1278
Asp700I GAANNNNTTC 2 cut(s) 450, 1048
AspLEI GCGC 3 cut(s) 32, 83, 1071
AspS9I GGNCC 1 cut(s) 556
AsuII TTCGAA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 582
BanI GGYRCC 1 cut(s) 1245
BanII GRGCYC 2 cut(s) 640, 815
BbsI GAAGAC 2 cut(s) 586, 887
BbvI GCAGC 2 cut(s) 847, 1206
BccI CCATC 3 cut(s) 22, 551, 983
BciT130I CCWGG 1 cut(s) 1254
BciVI GTATCC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 865
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 865
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 3 cut(s) 787, 861, 1220
BlsI GCNGC 3 cut(s) 788, 862, 1221
BmcAI AGTACT 1 cut(s) 1116
Bme1390I CCNGG 1 cut(s) 1254
Bme18I GGWCC 1 cut(s) 556
BmeRI GACNNNNNGTC 1 cut(s) 562
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 2 cut(s) 639, 1247
BmrFI CCNGG 1 cut(s) 1254
BmrI ACTGGG 4 cut(s) 643, 817, 904, 985
BmsI GCATC 5 cut(s) 32, 132, 984, 989, 1141
BmuI ACTGGG 4 cut(s) 643, 817, 904, 985
BpiI GAAGAC 2 cut(s) 586, 887
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 1275
Bpu14I TTCGAA 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 3 cut(s) 379, 1105, 1178
BsaXI ACNNNNNCTCC 2 cut(s) 1173, 1203
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 735
Bse1I ACTGG 8 cut(s) 216, 404, 638, 740, 812, 899, 980, 1051
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 4 cut(s) 39, 410, 425, 1192
Bse8I GATNNNNATC 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 379
BseBI CCWGG 1 cut(s) 1254
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 3 cut(s) 750, 786, 999
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 386, 735
BseMI GCAATG 4 cut(s) 39, 410, 425, 1192
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 8 cut(s) 216, 404, 638, 740, 812, 899, 980, 1051
BseRI GAGGAG 2 cut(s) 92, 278
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 2 cut(s) 847, 1206
BsgI GTGCAG 3 cut(s) 289, 990, 1205
Bsh1236I CGCG 3 cut(s) 48, 576, 1071
BshNI GGYRCC 1 cut(s) 1245
BsiSI CCGG 3 cut(s) 380, 1106, 1179
BslFI GGGAC 1 cut(s) 934
BslI CCNNNNNNNGG 2 cut(s) 386, 735
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 934
Bsp119I TTCGAA 1 cut(s) 185
Bsp1286I GDGCHC 3 cut(s) 582, 640, 815
Bsp13I TCCGGA 1 cut(s) 379
Bsp1407I TGTACA 1 cut(s) 1167
Bsp143I GATC 4 cut(s) 306, 411, 795, 1062
BspACI CCGC 4 cut(s) 48, 468, 576, 786
BspCNI CTCAG 1 cut(s) 253
BspEI TCCGGA 1 cut(s) 379
BspFNI CGCG 3 cut(s) 48, 576, 1071
BspLI GGNNCC 2 cut(s) 639, 1247
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 1 cut(s) 406
BspT104I TTCGAA 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 1245
BspTI CTTAAG 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 786
BsrDI GCAATG 4 cut(s) 39, 410, 425, 1192
BsrGI TGTACA 1 cut(s) 1167
BsrI ACTGG 8 cut(s) 216, 404, 638, 740, 812, 899, 980, 1051
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 4 cut(s) 306, 411, 795, 1062
BssNI GRCGYC 1 cut(s) 376
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 1254
Bst4CI ACNGT 2 cut(s) 302, 592
BstACI GRCGYC 1 cut(s) 376
BstAFI CTTAAG 1 cut(s) 455
BstAPI GCANNNNNTGC 1 cut(s) 860
BstAUI TGTACA 1 cut(s) 1167
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 578, 726
BstDEI CTNAG 2 cut(s) 261, 464
BstF5I GGATG 3 cut(s) 750, 786, 999
BstFNI CGCG 3 cut(s) 48, 576, 1071
BstHHI GCGC 3 cut(s) 32, 83, 1071
BstKTI GATC 4 cut(s) 309, 414, 798, 1065
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 4 cut(s) 306, 411, 795, 1062
BstMWI GCNNNNNNNGC 5 cut(s) 29, 38, 577, 725, 860
BstNI CCWGG 1 cut(s) 1254
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 1252
BstSFI CTRYAG 1 cut(s) 865
BstSLI GKGCMC 1 cut(s) 582
BstUI CGCG 3 cut(s) 48, 576, 1071
BstV1I GCAGC 2 cut(s) 847, 1206
BstV2I GAAGAC 2 cut(s) 586, 887
BstX2I RGATCY 1 cut(s) 411
BstXI CCANNNNNNTGG 1 cut(s) 1269
BstYI RGATCY 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 261
BsuI GTATCC 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 1012
BtsCI GGATG 3 cut(s) 750, 786, 999
BtsIMutI CAGTG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 2 cut(s) 578, 726
CfoI GCGC 3 cut(s) 32, 83, 1071
Cfr13I GGNCC 1 cut(s) 556
CseI GACGC 1 cut(s) 582
Csp6I GTAC 4 cut(s) 838, 1115, 1168, 1190
CviQI GTAC 4 cut(s) 838, 1115, 1168, 1190
DdeI CTNAG 2 cut(s) 261, 464
DpnI GATC 4 cut(s) 308, 413, 797, 1064
DpnII GATC 4 cut(s) 306, 411, 795, 1062
DriI GACNNNNNGTC 1 cut(s) 562
Eam1105I GACNNNNNGTC 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 2 cut(s) 640, 815
Eco47I GGWCC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 580
Eco81I CCTNAGG 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 1252
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 2 cut(s) 640, 815
ErhI CCWWGG 1 cut(s) 603
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FaqI GGGAC 1 cut(s) 934
FauI CCCGC 1 cut(s) 569
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 3 cut(s) 787, 861, 1220
FokI GGATG 3 cut(s) 737, 793, 1006
FriOI GRGCYC 2 cut(s) 640, 815
Fsp4HI GCNGC 3 cut(s) 787, 861, 1220
FspBI CTAG 1 cut(s) 524
GlaI GCGC 3 cut(s) 31, 82, 1070
GluI GCNGC 3 cut(s) 787, 861, 1220
GsuI CTGGAG 1 cut(s) 1275
HapII CCGG 3 cut(s) 380, 1106, 1179
HgaI GACGC 1 cut(s) 582
HhaI GCGC 3 cut(s) 32, 83, 1071
Hin1I GRCGYC 1 cut(s) 376
Hin6I GCGC 3 cut(s) 30, 81, 1069
HinP1I GCGC 3 cut(s) 30, 81, 1069
HincII GTYRAC 2 cut(s) 748, 901
HindII GTYRAC 2 cut(s) 748, 901
HinfI GANTC 7 cut(s) 383, 494, 539, 653, 710, 913, 1035
HpaII CCGG 3 cut(s) 380, 1106, 1179
Hpy166II GTNNAC 4 cut(s) 748, 901, 1168, 1170
Hpy188I TCNGA 8 cut(s) 325, 599, 664, 680, 918, 1054, 1081, 1231
Hpy188III TCNNGA 6 cut(s) 344, 367, 380, 443, 986, 1262
Hpy8I GTNNAC 4 cut(s) 748, 901, 1168, 1170
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 3 cut(s) 100, 827, 1259
HpyCH4III ACNGT 2 cut(s) 302, 592
HpyCH4IV ACGT 2 cut(s) 376, 771
HpyCH4V TGCA 8 cut(s) 23, 270, 423, 502, 617, 971, 1222, 1236
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 38, 577, 725, 860
HpyF3I CTNAG 2 cut(s) 261, 464
HpySE526I ACGT 2 cut(s) 376, 771
Hsp92I GRCGYC 1 cut(s) 376
HspAI GCGC 3 cut(s) 30, 81, 1069
Kpn2I TCCGGA 1 cut(s) 379
Kzo9I GATC 4 cut(s) 306, 411, 795, 1062
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 2 cut(s) 847, 1206
LweI GCATC 5 cut(s) 32, 132, 984, 989, 1141
MaeI CTAG 1 cut(s) 524
MaeII ACGT 2 cut(s) 376, 771
MaeIII GTNAC 1 cut(s) 1123
MalI GATC 4 cut(s) 308, 413, 797, 1064
MbiI CCGCTC 1 cut(s) 786
MboI GATC 4 cut(s) 306, 411, 795, 1062
MboII GAAGA 5 cut(s) 586, 842, 854, 892, 1072
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 3 cut(s) 582, 640, 815
MluCI AATT 6 cut(s) 626, 658, 845, 1138, 1225, 1278
MmeI TCCRAC 1 cut(s) 162
MroI TCCGGA 1 cut(s) 379
MroXI GAANNNNTTC 2 cut(s) 450, 1048
MseI TTAA 3 cut(s) 156, 438, 456
MslI CAYNNNNRTG 5 cut(s) 755, 908, 944, 1070, 1163
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 3 cut(s) 380, 1106, 1179
MspR9I CCNGG 1 cut(s) 1254
MvaI CCWGG 1 cut(s) 1254
MvnI CGCG 3 cut(s) 48, 576, 1071
MwoI GCNNNNNNNGC 5 cut(s) 29, 38, 577, 725, 860
NdeII GATC 4 cut(s) 306, 411, 795, 1062
NlaIV GGNNCC 2 cut(s) 639, 1247
NspI RCATGY 1 cut(s) 728
NspV TTCGAA 1 cut(s) 185
OliI CACNNNNGTG 2 cut(s) 908, 1163
PaeI GCATGC 1 cut(s) 728
PaqCI CACCTGC 1 cut(s) 865
PdmI GAANNNNTTC 2 cut(s) 450, 1048
PfeI GAWTC 7 cut(s) 383, 494, 539, 653, 710, 913, 1035
PflMI CCANNNNNTGG 1 cut(s) 735
PfoI TCCNGGA 1 cut(s) 1252
PkrI GCNGC 3 cut(s) 788, 862, 1221
Psp6I CCWGG 1 cut(s) 1252
PspGI CCWGG 1 cut(s) 1252
PspN4I GGNNCC 2 cut(s) 639, 1247
PspPI GGNCC 1 cut(s) 556
PsuI RGATCY 1 cut(s) 411
RsaI GTAC 4 cut(s) 839, 1116, 1169, 1191
RsaNI GTAC 4 cut(s) 838, 1115, 1168, 1190
RseI CAYNNNNRTG 5 cut(s) 755, 908, 944, 1070, 1163
SalI GTCGAC 1 cut(s) 899
SaqAI TTAA 3 cut(s) 156, 438, 456
SatI GCNGC 3 cut(s) 787, 861, 1220
Sau3AI GATC 4 cut(s) 306, 411, 795, 1062
Sau96I GGNCC 1 cut(s) 556
ScaI AGTACT 1 cut(s) 1116
ScrFI CCNGG 1 cut(s) 1254
SduI GDGCHC 3 cut(s) 582, 640, 815
SetI ASST 7 cut(s) 8, 57, 248, 379, 511, 774, 859
SfaNI GCATC 5 cut(s) 32, 132, 984, 989, 1141
SfcI CTRYAG 1 cut(s) 865
SfuI TTCGAA 1 cut(s) 185
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 5 cut(s) 755, 908, 944, 1070, 1163
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SphI GCATGC 1 cut(s) 728
Sse9I AATT 6 cut(s) 626, 658, 845, 1138, 1225, 1278
SsiI CCGC 4 cut(s) 48, 468, 576, 786
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 1 cut(s) 1252
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 2 cut(s) 302, 592
TaiI ACGT 2 cut(s) 379, 774
TaqI TCGA 4 cut(s) 185, 255, 305, 900
TasI AATT 6 cut(s) 626, 658, 845, 1138, 1225, 1278
TatI WGTACW 3 cut(s) 1114, 1167, 1189
TauI GCSGC 1 cut(s) 789
TfiI GAWTC 7 cut(s) 383, 494, 539, 653, 710, 913, 1035
Tru1I TTAA 3 cut(s) 156, 438, 456
Tru9I TTAA 3 cut(s) 156, 438, 456
TscAI CASTG 1 cut(s) 216
TseI GCWGC 2 cut(s) 860, 1219
TspDTI ATGAA 7 cut(s) 50, 82, 348, 681, 1040, 1112, 1290
TspGWI ACGGA 3 cut(s) 130, 297, 840
TspRI CASTG 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 735
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 2 cut(s) 626, 1278
XceI RCATGY 1 cut(s) 728
XmiI GTMKAC 1 cut(s) 900
XmnI GAANNNNTTC 2 cut(s) 450, 1048
XspI CTAG 1 cut(s) 524
ZraI GACGTC 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.