pycom04g14210

Protein trichome birefringence-like 3

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
17090667 .. 17093070
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14210.2

Sequence Viewer

Length: 1491 bp
ATGCAAGATGTCAGCCTTTCCTCATCATTCTGTTTGTACACATCATTTCATATAATCCTCCCTTTTCTTTCTTCTCCCACAATCAAAAAGCTTTCTGCAGTACTCTACTCTCTCCCAACCATGAGCTTCCCTCCTTCTGCATCCGGCGCGATGAAAGCGGTTCGAGGAAAGCTACATTTTCCTGTTGTCATGGTCTGCGCTATCGCCTTTATCAGTCTCCTCTACGCCGAACGATCTAGCATCAGGCTTTCCTCCAACCCTTTTTTCAAAATTAAGTCATGTTCCAAACCCGAAGCCATTACGAAAAATAAAAACAGAAATGCTACCGAGGATAAGTTAAGGGATTCCATATTAGATGATAGGGATAAGTTAAGGGATCCCATATTAGATGATAGGTTTGCTTTCGACCCCGAGGAGTGCAGCGTTGAGAATGGAGAGTGGGTGTTCAACCGTTCGATCAAGCCTCTTTACTCGGATAGAAGTTGCCCGTATCTTGATAGACAAGTTTCGTGTGTCAAGAATGGACGTCCGGATTCTGGCTATCGCTACTGGCAATGGCAGATTGAAGATTGTACATTGCCAAGGTTGACAACTTACAATGTATTTGTTTCCAAGTTTATATGTAGGTTTGATCCAGAAGTTACACTTAAGAAACTCAGAGGAAAGAGACTACTTTTTGTTGGGGATTCTTTGCAAAGAGGTCAATGGCAATCTTTAGTCTGCATGGTCGAATCCATCATACCCAAGAACCAAAAATCCATTCAACGAGGGCGGTCTCATACAGTCTTCAGAGCCAAGGAGTATAATGCTACTATTGAATTCTATTGGGCGCCATTTCTGGTTGAGTCCAATTCTGATGAACATATAATAGGAAATCCAAGGGAAAGAATACTAAAAGTGGATTCAGTTGCCAAGCATGCGAAATACTGGACAGGAGTAGATATCCTTGCGTTCAACACTTACGTTTGGTGGATGAGCGGCTACACGATCAAATCATACTGGGGATCGTTTCCAAATGGTGAAGAAGGGTATGAAGAATTGGATGCACCGGTTGCCTACAGAATGGCGTTGAAGACCTGGGCAAACTGGGTCGACTTAAATATCAATCCGAACAAGACTCGTGTTTTTTTCACTACTATGTCCCCTACACACATGAGAAGTGCAGACTGGGAAAATCCAGATGGGATCAAATGCTTCAACGAAACAAAGCCGTACATGAAAAAGGGATTCTGGGGAACTGGTTCGGACAAGAGGGTCATGCGCGTGGTGTCCGAAGTAATCCGCAAAATGAAAGTTCCGGTTTCAGTACTTAATGTAACGCAGATGTCAAATCACAGAGTTGATGCTCACACAAAAGTTTACACCGAAACCGGAGGCAACCTACTAACTGATGAACAAAAGGCTGATGTGCTGCACAATTCAGATTGTATACATTGGTGCCTTCCTGGAGTTCCAGACGCATGGAATCAAATTTTTATGGCACATTTGTAG

Protein Analysis

497

Amino Acids

57.12

Weight (kDa)

9.01

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01360 AT5G01360
fragaria_vesca FvH4_6g11230 FvH4_6g11230
malus_domestica MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica Prupe.6G279700_v2.0.a1
pyrus_communis pycom04g14210 pycom12g16280
rosa_chinensis RchiOBHm_Chr3g0462741
rosa_laevigata RLG00000024836
rosa_multiflora Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii Rroxscaffold_6G00417240
rosa_rugosa Rorug03G0058900
rosa_samantha Rh3DG122300
rosa_wichuraiana Rw3G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1253
AatII GACGTC 1 cut(s) 529
AccB1I GGYRCC 2 cut(s) 829, 1437
AccBSI CCGCTC 1 cut(s) 978
AccI GTMKAC 2 cut(s) 1092, 1429
AccII CGCG 2 cut(s) 149, 1263
AccIII TCCGGA 1 cut(s) 529
AciI CCGC 4 cut(s) 158, 772, 978, 1282
AclWI GGATC 5 cut(s) 371, 384, 626, 1012, 1193
AcsI RAATTY 2 cut(s) 818, 1470
AcuI CTGAAG 1 cut(s) 772
AcyI GRCGYC 2 cut(s) 526, 830
AfaI GTAC 5 cut(s) 38, 102, 574, 1214, 1308
AfiI CCNNNNNNNGG 1 cut(s) 536
AflII CTTAAG 1 cut(s) 647
AgeI ACCGGT 1 cut(s) 1048
AgsI TTSAA 8 cut(s) 268, 448, 566, 764, 818, 955, 1072, 1198
AjnI CCWGG 2 cut(s) 1076, 1444
AjuI GAANNNNNNNTTGG 4 cut(s) 248, 280, 744, 776
AloI GAACNNNNNNTCC 2 cut(s) 740, 772
AluBI AGCT 3 cut(s) 91, 126, 172
AluI AGCT 3 cut(s) 91, 126, 172
Alw26I GTCTC 3 cut(s) 221, 661, 780
AlwI GGATC 5 cut(s) 371, 384, 626, 1012, 1193
Ama87I CYCGRG 1 cut(s) 410
Aor13HI TCCGGA 1 cut(s) 529
ApeKI GCWGC 2 cut(s) 420, 1411
ApoI RAATTY 2 cut(s) 818, 1470
AsiGI ACCGGT 1 cut(s) 1048
Asp700I GAANNNNTTC 1 cut(s) 1240
AspLEI GCGC 4 cut(s) 149, 200, 832, 1263
AsuHPI GGTGA 1 cut(s) 1031
AvaI CYCGRG 1 cut(s) 410
BamHI GGATCC 1 cut(s) 376
BanI GGYRCC 2 cut(s) 829, 1437
BauI CACGAG 1 cut(s) 1119
BbsI GAAGAC 2 cut(s) 778, 1079
BbvI GCAGC 2 cut(s) 432, 1398
BccI CCATC 2 cut(s) 743, 1175
BceAI ACGGC 1 cut(s) 1195
BciT130I CCWGG 2 cut(s) 1078, 1446
BcoDI GTCTC 3 cut(s) 221, 661, 780
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 2 cut(s) 96, 1057
BfoI RGCGCY 1 cut(s) 833
BfrI CTTAAG 1 cut(s) 647
BisI GCNGC 3 cut(s) 421, 979, 1412
BlsI GCNGC 3 cut(s) 422, 980, 1413
BmcAI AGTACT 2 cut(s) 102, 1308
Bme1390I CCNGG 2 cut(s) 1078, 1446
BmeT110I CYCGRG 1 cut(s) 410
BmiI GGNNCC 3 cut(s) 378, 831, 1439
BmrFI CCNGG 2 cut(s) 1078, 1446
BmrI ACTGGG 3 cut(s) 1009, 1096, 1177
BmsI GCATC 4 cut(s) 149, 249, 1033, 1333
BmuI ACTGGG 3 cut(s) 1009, 1096, 1177
BpiI GAAGAC 2 cut(s) 778, 1079
BplI GAGNNNNNCTC 2 cut(s) 115, 147
BpmI CTGGAG 1 cut(s) 1467
BsaHI GRCGYC 2 cut(s) 526, 830
BsaI GGTCTC 1 cut(s) 780
BsaJI CCNNGG 6 cut(s) 327, 411, 581, 795, 878, 1077
BsaWI WCCGGW 4 cut(s) 529, 1048, 1297, 1370
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse118I RCCGGY 1 cut(s) 1048
Bse1I ACTGG 6 cut(s) 554, 932, 1004, 1091, 1172, 1243
Bse3DI GCAATG 2 cut(s) 560, 575
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 2 cut(s) 1078, 1446
BseDI CCNNGG 6 cut(s) 327, 411, 581, 795, 878, 1077
BseGI GGATG 3 cut(s) 140, 978, 1048
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMI GCAATG 2 cut(s) 560, 575
BseMII CTCAG 1 cut(s) 670
BseNI ACTGG 6 cut(s) 554, 932, 1004, 1091, 1172, 1243
BseRI GAGGAG 2 cut(s) 209, 428
BseXI GCAGC 2 cut(s) 432, 1398
BsgI GTGCAG 3 cut(s) 439, 1182, 1397
Bsh1236I CGCG 2 cut(s) 149, 1263
BshNI GGYRCC 2 cut(s) 829, 1437
BshTI ACCGGT 1 cut(s) 1048
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 5 cut(s) 144, 530, 1049, 1298, 1371
BslFI GGGAC 1 cut(s) 1126
BslI CCNNNNNNNGG 1 cut(s) 536
BsmAI GTCTC 3 cut(s) 221, 661, 780
BsmFI GGGAC 1 cut(s) 1126
Bso31I GGTCTC 1 cut(s) 780
BsoBI CYCGRG 1 cut(s) 410
Bsp13I TCCGGA 1 cut(s) 529
Bsp1407I TGTACA 2 cut(s) 36, 572
Bsp143I GATC 7 cut(s) 233, 376, 456, 631, 987, 1004, 1185
BspACI CCGC 4 cut(s) 158, 772, 978, 1282
BspCNI CTCAG 1 cut(s) 669
BspEI TCCGGA 1 cut(s) 529
BspFNI CGCG 2 cut(s) 149, 1263
BspLI GGNNCC 3 cut(s) 378, 831, 1439
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 5 cut(s) 371, 384, 626, 1012, 1193
BspT107I GGYRCC 2 cut(s) 829, 1437
BspTI CTTAAG 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 780
BsrBI CCGCTC 1 cut(s) 978
BsrDI GCAATG 2 cut(s) 560, 575
BsrFI RCCGGY 1 cut(s) 1048
BsrGI TGTACA 2 cut(s) 36, 572
BsrI ACTGG 6 cut(s) 554, 932, 1004, 1091, 1172, 1243
BssAI RCCGGY 1 cut(s) 1048
BssECI CCNNGG 6 cut(s) 327, 411, 581, 795, 878, 1077
BssMI GATC 7 cut(s) 233, 376, 456, 631, 987, 1004, 1185
BssNAI GTATAC 1 cut(s) 1430
BssNI GRCGYC 2 cut(s) 526, 830
BssSI CACGAG 1 cut(s) 1119
BssT1I CCWWGG 3 cut(s) 581, 795, 878
Bst1107I GTATAC 1 cut(s) 1430
Bst2BI CACGAG 1 cut(s) 1119
Bst2UI CCWGG 2 cut(s) 1078, 1446
Bst4CI ACNGT 2 cut(s) 452, 784
BstACI GRCGYC 2 cut(s) 526, 830
BstAFI CTTAAG 1 cut(s) 647
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstAUI TGTACA 2 cut(s) 36, 572
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 1 cut(s) 656
BstF5I GGATG 3 cut(s) 140, 978, 1048
BstFNI CGCG 2 cut(s) 149, 1263
BstH2I RGCGCY 1 cut(s) 833
BstHHI GCGC 4 cut(s) 149, 200, 832, 1263
BstKTI GATC 7 cut(s) 236, 379, 459, 634, 990, 1007, 1188
BstMAI GTCTC 3 cut(s) 221, 661, 780
BstMBI GATC 7 cut(s) 233, 376, 456, 631, 987, 1004, 1185
BstMWI GCNNNNNNNGC 4 cut(s) 146, 155, 917, 1052
BstNI CCWGG 2 cut(s) 1078, 1446
BstNSI RCATGY 1 cut(s) 920
BstSCI CCNGG 2 cut(s) 1076, 1444
BstSFI CTRYAG 2 cut(s) 96, 1057
BstUI CGCG 2 cut(s) 149, 1263
BstV1I GCAGC 2 cut(s) 432, 1398
BstV2I GAAGAC 2 cut(s) 778, 1079
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 1461
BstYI RGATCY 1 cut(s) 376
BstZ17I GTATAC 1 cut(s) 1430
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 3 cut(s) 140, 978, 1048
Cac8I GCNNGC 1 cut(s) 918
CfoI GCGC 4 cut(s) 149, 200, 832, 1263
Cfr10I RCCGGY 1 cut(s) 1048
CseI GACGC 1 cut(s) 1466
Csp6I GTAC 5 cut(s) 37, 101, 573, 1213, 1307
CspAI ACCGGT 1 cut(s) 1048
CviAII CATG 9 cut(s) 121, 190, 279, 724, 917, 1153, 1216, 1258, 1461
CviQI GTAC 5 cut(s) 37, 101, 573, 1213, 1307
DdeI CTNAG 1 cut(s) 656
DinI GGCGCC 1 cut(s) 831
DpnI GATC 7 cut(s) 235, 378, 458, 633, 989, 1006, 1187
DpnII GATC 7 cut(s) 233, 376, 456, 631, 987, 1004, 1185
DrdI GACNNNNNNGTC 1 cut(s) 1253
DseDI GACNNNNNNGTC 1 cut(s) 1253
Eco130I CCWWGG 3 cut(s) 581, 795, 878
Eco31I GGTCTC 1 cut(s) 780
Eco32I GATATC 1 cut(s) 943
Eco57I CTGAAG 1 cut(s) 772
Eco88I CYCGRG 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 1076, 1444
EcoRV GATATC 1 cut(s) 943
EcoT14I CCWWGG 3 cut(s) 581, 795, 878
EgeI GGCGCC 1 cut(s) 831
EheI GGCGCC 1 cut(s) 831
ErhI CCWWGG 3 cut(s) 581, 795, 878
FaeI CATG 9 cut(s) 124, 193, 282, 727, 920, 1156, 1219, 1261, 1464
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FaqI GGGAC 1 cut(s) 1126
FatI CATG 9 cut(s) 120, 189, 278, 723, 916, 1152, 1215, 1257, 1460
FblI GTMKAC 2 cut(s) 1092, 1429
Fnu4HI GCNGC 3 cut(s) 421, 979, 1412
FokI GGATG 3 cut(s) 127, 985, 1055
Fsp4HI GCNGC 3 cut(s) 421, 979, 1412
FspBI CTAG 1 cut(s) 237
GlaI GCGC 4 cut(s) 148, 199, 831, 1262
GluI GCNGC 3 cut(s) 421, 979, 1412
GsuI CTGGAG 1 cut(s) 1467
HaeII RGCGCY 1 cut(s) 833
HapII CCGG 5 cut(s) 144, 530, 1049, 1298, 1371
HgaI GACGC 1 cut(s) 1466
HhaI GCGC 4 cut(s) 149, 200, 832, 1263
Hin1I GRCGYC 2 cut(s) 526, 830
Hin1II CATG 9 cut(s) 124, 193, 282, 727, 920, 1156, 1219, 1261, 1464
Hin6I GCGC 4 cut(s) 147, 198, 830, 1261
HinP1I GCGC 4 cut(s) 147, 198, 830, 1261
HincII GTYRAC 2 cut(s) 588, 1093
HindII GTYRAC 2 cut(s) 588, 1093
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 9 cut(s) 344, 533, 686, 731, 845, 902, 1117, 1227, 1465
HpaII CCGG 5 cut(s) 144, 530, 1049, 1298, 1371
HphI GGTGA 1 cut(s) 1031
Hpy166II GTNNAC 5 cut(s) 39, 588, 1093, 1360, 1430
Hpy188I TCNGA 8 cut(s) 475, 659, 791, 856, 1110, 1246, 1273, 1423
Hpy188III TCNNGA 6 cut(s) 494, 517, 530, 635, 1178, 1454
Hpy8I GTNNAC 5 cut(s) 39, 588, 1093, 1360, 1430
HpyAV CCTTC 3 cut(s) 144, 1019, 1451
HpyCH4III ACNGT 2 cut(s) 452, 784
HpyCH4IV ACGT 2 cut(s) 526, 963
HpyCH4V TGCA 9 cut(s) 4, 98, 140, 420, 694, 723, 1046, 1163, 1414
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 155, 917, 1052
HpyF3I CTNAG 1 cut(s) 656
HpySE526I ACGT 2 cut(s) 526, 963
Hsp92I GRCGYC 2 cut(s) 526, 830
Hsp92II CATG 9 cut(s) 124, 193, 282, 727, 920, 1156, 1219, 1261, 1464
HspAI GCGC 4 cut(s) 147, 198, 830, 1261
KasI GGCGCC 1 cut(s) 829
Kpn2I TCCGGA 1 cut(s) 529
Kzo9I GATC 7 cut(s) 233, 376, 456, 631, 987, 1004, 1185
Lsp1109I GCAGC 2 cut(s) 432, 1398
LweI GCATC 4 cut(s) 149, 249, 1033, 1333
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 526, 963
MaeIII GTNAC 2 cut(s) 640, 1315
MalI GATC 7 cut(s) 235, 378, 458, 633, 989, 1006, 1187
MbiI CCGCTC 1 cut(s) 978
MboI GATC 7 cut(s) 233, 376, 456, 631, 987, 1004, 1185
MboII GAAGA 6 cut(s) 63, 578, 778, 1034, 1046, 1084
MflI RGATCY 1 cut(s) 376
MluCI AATT 6 cut(s) 270, 818, 850, 1037, 1417, 1470
Mly113I GGCGCC 1 cut(s) 830
MlyI GAGTC 2 cut(s) 854, 1111
MmeI TCCRAC 1 cut(s) 279
MroI TCCGGA 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 1240
MseI TTAA 6 cut(s) 273, 338, 371, 648, 1097, 1311
MslI CAYNNNNRTG 2 cut(s) 1136, 1262
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 5 cut(s) 144, 530, 1049, 1298, 1371
MspR9I CCNGG 2 cut(s) 1078, 1446
MvaI CCWGG 2 cut(s) 1078, 1446
MvnI CGCG 2 cut(s) 149, 1263
MwoI GCNNNNNNNGC 4 cut(s) 146, 155, 917, 1052
NarI GGCGCC 1 cut(s) 830
NdeII GATC 7 cut(s) 233, 376, 456, 631, 987, 1004, 1185
NlaIII CATG 9 cut(s) 124, 193, 282, 727, 920, 1156, 1219, 1261, 1464
NlaIV GGNNCC 3 cut(s) 378, 831, 1439
NspI RCATGY 1 cut(s) 920
PaeI GCATGC 1 cut(s) 920
PdmI GAANNNNTTC 1 cut(s) 1240
PfeI GAWTC 7 cut(s) 344, 533, 686, 731, 902, 1227, 1465
PfoI TCCNGGA 1 cut(s) 1444
PinAI ACCGGT 1 cut(s) 1048
PkrI GCNGC 3 cut(s) 422, 980, 1413
PleI GAGTC 2 cut(s) 853, 1111
PluTI GGCGCC 1 cut(s) 833
PpsI GAGTC 2 cut(s) 853, 1111
Psp6I CCWGG 2 cut(s) 1076, 1444
PspGI CCWGG 2 cut(s) 1076, 1444
PspN4I GGNNCC 3 cut(s) 378, 831, 1439
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 5 cut(s) 38, 102, 574, 1214, 1308
RsaNI GTAC 5 cut(s) 37, 101, 573, 1213, 1307
RseI CAYNNNNRTG 2 cut(s) 1136, 1262
SalI GTCGAC 1 cut(s) 1091
SaqAI TTAA 6 cut(s) 273, 338, 371, 648, 1097, 1311
SatI GCNGC 3 cut(s) 421, 979, 1412
Sau3AI GATC 7 cut(s) 233, 376, 456, 631, 987, 1004, 1185
ScaI AGTACT 2 cut(s) 102, 1308
SchI GAGTC 2 cut(s) 854, 1111
ScrFI CCNGG 2 cut(s) 1078, 1446
SfaNI GCATC 4 cut(s) 149, 249, 1033, 1333
SfcI CTRYAG 2 cut(s) 96, 1057
SfoI GGCGCC 1 cut(s) 831
SmiMI CAYNNNNRTG 2 cut(s) 1136, 1262
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
SphI GCATGC 1 cut(s) 920
Sse9I AATT 6 cut(s) 270, 818, 850, 1037, 1417, 1470
SsiI CCGC 4 cut(s) 158, 772, 978, 1282
SspDI GGCGCC 1 cut(s) 829
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 1076, 1444
StyI CCWWGG 3 cut(s) 581, 795, 878
TaaI ACNGT 2 cut(s) 452, 784
TaiI ACGT 2 cut(s) 529, 966
TaqI TCGA 5 cut(s) 163, 405, 455, 729, 1092
TasI AATT 6 cut(s) 270, 818, 850, 1037, 1417, 1470
TatI WGTACW 4 cut(s) 36, 100, 572, 1306
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 7 cut(s) 344, 533, 686, 731, 902, 1227, 1465
Tru1I TTAA 6 cut(s) 273, 338, 371, 648, 1097, 1311
Tru9I TTAA 6 cut(s) 273, 338, 371, 648, 1097, 1311
TseI GCWGC 2 cut(s) 420, 1411
TspDTI ATGAA 7 cut(s) 38, 167, 873, 1047, 1232, 1304, 1407
Vha464I CTTAAG 1 cut(s) 647
XapI RAATTY 2 cut(s) 818, 1470
XceI RCATGY 1 cut(s) 920
XmiI GTMKAC 2 cut(s) 1092, 1429
XmnI GAANNNNTTC 1 cut(s) 1240
XspI CTAG 1 cut(s) 237
ZraI GACGTC 1 cut(s) 527
ZrmI AGTACT 2 cut(s) 102, 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.