Rw3G009900

Protein trichome birefringence-like 3

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
9511315 .. 9513386
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009900.1

Sequence Viewer

Length: 1311 bp
ATGAGCTCAGGACAGTCCACCACTGCAGGCACAATGAAAGGTTTTAGAGGAAAGCTACATCTTCCTATTATCATGGTCTGTTCTATTGCCTTGATCAGTCTTTTGTTTACTGAAAGAATTAGTATTATTCTTTCTTCCAACCCTTTTTTCAAGCATAAATCCTGTTCCAGAAGAGCAGCATCTGTCACAAGAAAGAATGATAGAAATGCAACCAAGGAAAAGATAGATGATTCAATTGTAGATGATAGATTTGTGTTCGACCCGGAGGAGTGCAATGTTGAGAATGGAAAATGGGTGTTCAACCGTTCTATCAGGCCTTTTTACTCGGACAGAAGCTGCCCGTATCTTGATAGGCAAGTTTCTTGTGTCAAGAATGGAAGGCCGGATTCTGATTCTGATTACCGGCACTGGGAATGGCAGCCAGAAGATTGCACATTGCCTAGATTTAATCCAGAACTCATGCTTCAGAAACTTCGTAATAAGAGGCTGATGTTTGTTGGAGATTCTTTGCAAAGAGGTCAATGGCAATCTTTAGTCTGTATGGTTGAATCCATAATACCTCAAAACAAACAGTCCATGCGCCGGGGCGCGCTCTTTCAGTCTTCAGAGCCAAGGTACGAGTACAATGCTACAATTGAATTTTACTGGGATCCATTTCTGGTAGAGTCCAACTCTGACCTCCACATTGTTATCAATCCAAAGGATAGAATACTAAAAGTGGATTCAGTTGCCAAGCATGCAGAACACTGGACTGGTGTAGATATCCTTGTGTTCAATACTTTTGTTTGGTGGATGAGCGGCTATACGATCAAGTCATACTGGGGTCAATTTCCAAATGGGGAAGAAGGATATGAAGAGTTGGAAGCAGTAGTTGCATACAGAATAGCATTGAAGACATGGGCCAACTGGGTCGACACAAATGTCAATCCCAACAAGACTCGTGTCTTCTTCACTACTATGTCTCCTACACACATGAGGAGTGCAGACTGGAACAATCCAGAAGGGATGAAATGCTTCAATGAAACAAAGCCCTACATGAAAAAGGGATTCTGGAGTACTGGTGCTGATAAGAGGATCATGCGCGTGGTGGTCGGAGTAATAAAGAAAATGAAAGTTCCTGTTTCAGTTCTTAACATAACACAGATGTCAGATTACCGAGTTGACGCTCACACAAAAGTTTACACTGAGACTGGAGGCAAACTACTAACAGATGAGCAAAAGGCCGATGTGCTACACAACTCAGATTGTATACATTGGTGTCTGCCAGGAGTTCCGGATACATGGAATCAAATTTTTTTGGCAAATTTGTAG

Protein Analysis

436

Amino Acids

50.51

Weight (kDa)

8.67

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 89 - 144 2.1e-18 PMR5 N terminal Domain
PC-Esterase PF13839 146 - 434 2.2e-93 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01360 AT5G01360
fragaria_vesca FvH4_6g11230 FvH4_6g11230
malus_domestica MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica Prupe.6G279700_v2.0.a1
pyrus_communis pycom04g14210 pycom12g16280
rosa_chinensis RchiOBHm_Chr3g0462741
rosa_laevigata RLG00000024836
rosa_multiflora Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii Rroxscaffold_6G00417240
rosa_rugosa Rorug03G0058900
rosa_samantha Rh3DG122300
rosa_wichuraiana Rw3G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 920
AccBSI CCGCTC 1 cut(s) 798
AccI GTMKAC 2 cut(s) 912, 1249
AccII CGCG 2 cut(s) 590, 1083
AccIII TCCGGA 1 cut(s) 1273
AciI CCGC 1 cut(s) 798
AclWI GGATC 3 cut(s) 644, 657, 1082
AcsI RAATTY 3 cut(s) 638, 1290, 1303
AcuI CTGAAG 2 cut(s) 449, 588
AfaI GTAC 3 cut(s) 617, 623, 1057
AfiI CCNNNNNNNGG 2 cut(s) 409, 582
AgsI TTSAA 8 cut(s) 151, 234, 301, 548, 638, 775, 892, 1018
AjnI CCWGG 1 cut(s) 1264
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 3 cut(s) 6, 55, 336
AluI AGCT 3 cut(s) 6, 55, 336
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 966, 1181
AlwI GGATC 3 cut(s) 644, 657, 1082
AlwNI CAGNNNCTG 2 cut(s) 182, 336
Aor13HI TCCGGA 1 cut(s) 1273
AoxI GGCC 4 cut(s) 314, 380, 900, 1221
ApeKI GCWGC 3 cut(s) 176, 336, 418
ApoI RAATTY 3 cut(s) 638, 1290, 1303
Asp700I GAANNNNTTC 1 cut(s) 1013
AspLEI GCGC 4 cut(s) 582, 590, 592, 1083
AspS9I GGNCC 1 cut(s) 900
AsuC2I CCSGG 2 cut(s) 263, 584
BamHI GGATCC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 939
BbsI GAAGAC 3 cut(s) 594, 899, 937
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 188, 323, 430
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 1 cut(s) 1266
BciVI GTATCC 1 cut(s) 1270
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 2 cut(s) 263, 584
BcoDI GTCTC 2 cut(s) 966, 1181
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 1270
BisI GCNGC 4 cut(s) 177, 337, 419, 799
BlsI GCNGC 4 cut(s) 178, 338, 420, 800
BmcAI AGTACT 1 cut(s) 1057
Bme1390I CCNGG 3 cut(s) 263, 584, 1266
BmgT120I GGNCC 1 cut(s) 900
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 3 cut(s) 263, 584, 1266
BmrI ACTGGG 4 cut(s) 418, 655, 829, 916
BmsI GCATC 1 cut(s) 188
BmuI ACTGGG 4 cut(s) 418, 655, 829, 916
BoxI GACNNNNGTC 1 cut(s) 941
BpiI GAAGAC 3 cut(s) 594, 899, 937
BplI GAGNNNNNCTC 2 cut(s) 656, 688
BpmI CTGGAG 2 cut(s) 1072, 1212
Bpu10I CCTNAGC 1 cut(s) 7
BpuMI CCSGG 2 cut(s) 263, 584
BsaJI CCNNGG 3 cut(s) 213, 583, 611
BsaWI WCCGGW 1 cut(s) 1273
BsaXI ACNNNNNCTCC 4 cut(s) 946, 976, 1045, 1075
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 582
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 9 cut(s) 413, 650, 752, 757, 824, 911, 992, 1063, 1195
Bse3DI GCAATG 2 cut(s) 280, 434
BseAI TCCGGA 1 cut(s) 1273
BseBI CCWGG 1 cut(s) 1266
BseDI CCNNGG 3 cut(s) 213, 583, 611
BseGI GGATG 2 cut(s) 798, 1011
BseLI CCNNNNNNNGG 2 cut(s) 409, 582
BseMI GCAATG 2 cut(s) 280, 434
BseMII CTCAG 3 cut(s) 21, 1176, 1254
BseNI ACTGG 9 cut(s) 413, 650, 752, 757, 824, 911, 992, 1063, 1195
BsePI GCGCGC 1 cut(s) 588
BseRI GAGGAG 2 cut(s) 281, 991
BseXI GCAGC 3 cut(s) 188, 323, 430
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 2 cut(s) 590, 1083
BshFI GGCC 4 cut(s) 316, 382, 902, 1223
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 5 cut(s) 263, 383, 403, 583, 1274
BslI CCNNNNNNNGG 2 cut(s) 409, 582
BsmAI GTCTC 2 cut(s) 966, 1181
BsnI GGCC 4 cut(s) 316, 382, 902, 1223
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 1273
Bsp143I GATC 4 cut(s) 93, 649, 807, 1074
BspACI CCGC 1 cut(s) 798
BspANI GGCC 4 cut(s) 316, 382, 902, 1223
BspCNI CTCAG 3 cut(s) 20, 1177, 1253
BspEI TCCGGA 1 cut(s) 1273
BspFNI CGCG 2 cut(s) 590, 1083
BspLI GGNNCC 1 cut(s) 651
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 3 cut(s) 644, 657, 1082
BspQI GCTCTTC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 798
BsrDI GCAATG 2 cut(s) 280, 434
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 9 cut(s) 413, 650, 752, 757, 824, 911, 992, 1063, 1195
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 213, 583, 611
BssHII GCGCGC 1 cut(s) 588
BssMI GATC 4 cut(s) 93, 649, 807, 1074
BssNAI GTATAC 1 cut(s) 1250
BssSI CACGAG 1 cut(s) 939
BssT1I CCWWGG 2 cut(s) 213, 611
Bst1107I GTATAC 1 cut(s) 1250
Bst2BI CACGAG 1 cut(s) 939
Bst2UI CCWGG 1 cut(s) 1266
Bst4CI ACNGT 3 cut(s) 15, 305, 573
Bst6I CTCTTC 2 cut(s) 166, 849
BstAPI GCANNNNNTGC 1 cut(s) 872
BstC8I GCNNGC 3 cut(s) 28, 590, 738
BstDEI CTNAG 3 cut(s) 7, 1185, 1240
BstF5I GGATG 2 cut(s) 798, 1011
BstFNI CGCG 2 cut(s) 590, 1083
BstHHI GCGC 4 cut(s) 582, 590, 592, 1083
BstKTI GATC 4 cut(s) 96, 652, 810, 1077
BstMAI GTCTC 2 cut(s) 966, 1181
BstMBI GATC 4 cut(s) 93, 649, 807, 1074
BstMWI GCNNNNNNNGC 2 cut(s) 737, 872
BstNI CCWGG 1 cut(s) 1266
BstNSI RCATGY 1 cut(s) 740
BstPAI GACNNNNGTC 1 cut(s) 941
BstSCI CCNGG 3 cut(s) 261, 582, 1264
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 2 cut(s) 590, 1083
BstV1I GCAGC 3 cut(s) 188, 323, 430
BstV2I GAAGAC 3 cut(s) 594, 899, 937
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BstZ17I GTATAC 1 cut(s) 1250
BsuI GTATCC 1 cut(s) 1270
BsuRI GGCC 4 cut(s) 316, 382, 902, 1223
BtsCI GGATG 2 cut(s) 798, 1011
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 4 cut(s) 21, 406, 745, 1182
Cac8I GCNNGC 3 cut(s) 28, 590, 738
CaiI CAGNNNCTG 2 cut(s) 182, 336
CfoI GCGC 4 cut(s) 582, 590, 592, 1083
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 900
CseI GACGC 1 cut(s) 1172
Csp6I GTAC 3 cut(s) 616, 622, 1056
CviAII CATG 9 cut(s) 73, 460, 577, 737, 897, 973, 1036, 1078, 1281
CviQI GTAC 3 cut(s) 616, 622, 1056
DdeI CTNAG 3 cut(s) 7, 1185, 1240
DpnI GATC 4 cut(s) 95, 651, 809, 1076
DpnII GATC 4 cut(s) 93, 649, 807, 1074
DrdI GACNNNNNNGTC 1 cut(s) 920
DseDI GACNNNNNNGTC 1 cut(s) 920
Eam1104I CTCTTC 2 cut(s) 166, 849
EarI CTCTTC 2 cut(s) 166, 849
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 213, 611
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 8
Eco32I GATATC 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 449, 588
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 1264
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 2 cut(s) 213, 611
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 213, 611
FaeI CATG 9 cut(s) 76, 463, 580, 740, 900, 976, 1039, 1081, 1284
FatI CATG 9 cut(s) 72, 459, 576, 736, 896, 972, 1035, 1077, 1280
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 2 cut(s) 912, 1249
Fnu4HI GCNGC 4 cut(s) 177, 337, 419, 799
FokI GGATG 2 cut(s) 805, 1018
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 177, 337, 419, 799
FspBI CTAG 1 cut(s) 441
GlaI GCGC 4 cut(s) 581, 589, 591, 1082
GluI GCNGC 4 cut(s) 177, 337, 419, 799
GsuI CTGGAG 2 cut(s) 1072, 1212
HaeIII GGCC 4 cut(s) 316, 382, 902, 1223
HapII CCGG 5 cut(s) 263, 383, 403, 583, 1274
HgaI GACGC 1 cut(s) 1172
HhaI GCGC 4 cut(s) 582, 590, 592, 1083
Hin1II CATG 9 cut(s) 76, 463, 580, 740, 900, 976, 1039, 1081, 1284
Hin6I GCGC 4 cut(s) 580, 588, 590, 1081
HinP1I GCGC 4 cut(s) 580, 588, 590, 1081
HincII GTYRAC 2 cut(s) 913, 1162
HindII GTYRAC 2 cut(s) 913, 1162
HpaII CCGG 5 cut(s) 263, 383, 403, 583, 1274
Hpy166II GTNNAC 6 cut(s) 18, 108, 913, 1162, 1180, 1250
Hpy188I TCNGA 9 cut(s) 328, 391, 397, 468, 607, 676, 1094, 1150, 1243
Hpy188III TCNNGA 8 cut(s) 9, 168, 347, 370, 452, 998, 1051, 1274
Hpy8I GTNNAC 6 cut(s) 18, 108, 913, 1162, 1180, 1250
HpyAV CCTTC 3 cut(s) 372, 839, 995
HpyCH4III ACNGT 3 cut(s) 15, 305, 573
HpyCH4V TGCA 8 cut(s) 26, 209, 273, 432, 511, 740, 875, 983
HpyF10VI GCNNNNNNNGC 2 cut(s) 737, 872
HpyF3I CTNAG 3 cut(s) 7, 1185, 1240
Hsp92II CATG 9 cut(s) 76, 463, 580, 740, 900, 976, 1039, 1081, 1284
HspAI GCGC 4 cut(s) 580, 588, 590, 1081
Kpn2I TCCGGA 1 cut(s) 1273
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 4 cut(s) 93, 649, 807, 1074
LguI GCTCTTC 1 cut(s) 166
Lsp1109I GCAGC 3 cut(s) 188, 323, 430
LweI GCATC 1 cut(s) 188
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 95, 651, 809, 1076
MbiI CCGCTC 1 cut(s) 798
MboI GATC 4 cut(s) 93, 649, 807, 1074
MfeI CAATTG 2 cut(s) 234, 633
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 7 cut(s) 117, 234, 633, 638, 827, 1290, 1303
MlyI GAGTC 2 cut(s) 674, 931
MmeI TCCRAC 5 cut(s) 162, 478, 693, 840, 1072
MnlI CCTC 9 cut(s) 41, 259, 477, 509, 570, 689, 969, 1065, 1187
MroI TCCGGA 1 cut(s) 1273
MroXI GAANNNNTTC 1 cut(s) 1013
MseI TTAA 2 cut(s) 447, 1131
MslI CAYNNNNRTG 2 cut(s) 956, 1082
MspI CCGG 5 cut(s) 263, 383, 403, 583, 1274
MspR9I CCNGG 3 cut(s) 263, 584, 1266
MunI CAATTG 2 cut(s) 234, 633
MvaI CCWGG 1 cut(s) 1266
MvnI CGCG 2 cut(s) 590, 1083
MwoI GCNNNNNNNGC 2 cut(s) 737, 872
NciI CCSGG 2 cut(s) 263, 584
NdeII GATC 4 cut(s) 93, 649, 807, 1074
NlaIII CATG 9 cut(s) 76, 463, 580, 740, 900, 976, 1039, 1081, 1284
NlaIV GGNNCC 1 cut(s) 651
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 740
PaeI GCATGC 1 cut(s) 740
PauI GCGCGC 1 cut(s) 588
PceI AGGCCT 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 1013
PfeI GAWTC 8 cut(s) 230, 386, 392, 503, 548, 722, 1047, 1285
PkrI GCNGC 4 cut(s) 178, 338, 420, 800
PleI GAGTC 2 cut(s) 673, 931
PpsI GAGTC 2 cut(s) 673, 931
PshAI GACNNNNGTC 1 cut(s) 941
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 1264
PspGI CCWGG 1 cut(s) 1264
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 1 cut(s) 900
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 2 cut(s) 182, 336
PsuI RGATCY 1 cut(s) 649
PteI GCGCGC 1 cut(s) 588
RsaI GTAC 3 cut(s) 617, 623, 1057
RsaNI GTAC 3 cut(s) 616, 622, 1056
RseI CAYNNNNRTG 2 cut(s) 956, 1082
SacI GAGCTC 1 cut(s) 8
SalI GTCGAC 1 cut(s) 911
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 447, 1131
SatI GCNGC 4 cut(s) 177, 337, 419, 799
Sau3AI GATC 4 cut(s) 93, 649, 807, 1074
Sau96I GGNCC 1 cut(s) 900
ScaI AGTACT 1 cut(s) 1057
SchI GAGTC 2 cut(s) 674, 931
ScrFI CCNGG 3 cut(s) 263, 584, 1266
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 8, 43, 57, 338, 520, 562, 617, 681
SfaNI GCATC 1 cut(s) 188
SfcI CTRYAG 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 956, 1082
SphI GCATGC 1 cut(s) 740
Sse9I AATT 7 cut(s) 117, 234, 633, 638, 827, 1290, 1303
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 1 cut(s) 798
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 3 cut(s) 261, 582, 1264
StyI CCWWGG 2 cut(s) 213, 611
TaaI ACNGT 3 cut(s) 15, 305, 573
TaqI TCGA 2 cut(s) 258, 912
TasI AATT 7 cut(s) 117, 234, 633, 638, 827, 1290, 1303
TatI WGTACW 2 cut(s) 621, 1055
TauI GCSGC 1 cut(s) 801
TfiI GAWTC 8 cut(s) 230, 386, 392, 503, 548, 722, 1047, 1285
Tru1I TTAA 2 cut(s) 447, 1131
Tru9I TTAA 2 cut(s) 447, 1131
TscAI CASTG 4 cut(s) 28, 413, 752, 1189
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 176, 336, 418
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 6 cut(s) 50, 867, 1022, 1035, 1052, 1124
TspRI CASTG 4 cut(s) 28, 413, 752, 1189
XapI RAATTY 3 cut(s) 638, 1290, 1303
XceI RCATGY 1 cut(s) 740
XmiI GTMKAC 2 cut(s) 912, 1249
XmnI GAANNNNTTC 1 cut(s) 1013
XspI CTAG 1 cut(s) 441
ZrmI AGTACT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.