Rh3DG122300

Protein trichome birefringence-like 3

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
10369136 .. 10371282
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG122300.1

Sequence Viewer

Length: 1308 bp
ATGAGCTCAGGTCAGTCCACCACTGCAGGCACAATGAAAGGTTTTAGAGGAAAGCTACATCTTCCTATTATCATGGTCTGTTCTATTGCCTTGATCAGTCTTTTGTTTACTGAAAGAATTAGTATTATTCTTTCTTCCAACCCTTTTTTCAAGCATAAATCCTGTTCCAGAAGAGCAGCATCTGTCACAAGAAAGAATGATAGAAATGCAACCAAGGAAAAGATAGATGATTCAATTGTAGATGATAGATTTGTGTTCGACCCGGAGGAGTGCAATGTTGAGAATGGAAAATGGGTGTTCAACCGTTCTATCAGGCCTTTTTACTCGGACAGAAGCTGCCCGTATCTTGATAGGCAAGTTTCTTGTGTCAAGAATGGAAGGCCGGATTCTGATTCTGATTACCGGCACTGGGAATGGCAGCCAGAAGATTGCACATTGCCTAGATTTAATCCAGAACTCATGCTTCAGAAACTTCGTAATAAGAGGCTGATGTTTGTTGGAGATTCTTTGCAAAGAGGTCAATGGCAATCTTTAGTCTGTATGGTTGAATCCATAATACCTCAAAACAAACAGTCCATGCGCCGGGGGCGCGCTCTTTCAGTCTTCAGAGCCAAGGAGTACAATGCTACAATTGAATTTTACTGGGATCCATTTCTGGTAGAGTCCAACTCTGACCTCCACATTGTTATCAATCCAAAGGATAGAATACTAAAAGTGGATTCAGTTGCCAAGCATGCAGAACACTGGACTGGAGTAGATTTCCTTGTGTTCAATACTTTTGTTTGGTGGATGAGCGGCCATACGATCAAGTCATACTGGGGTTCATTTCCAAATGGGGAAGAAGGATATGAAGAGTTGGAAGCAGTAGTAGCATACAGAATAGCATTGAAGACATGGGCCAACTGGGTCGACACAAATGTCAATCCCAACAATACTCGTGTCTTCTTCACTACTATGTCTCCTACACACATGAGGAGTGCAGACTGGAACAATCCAGAAGGGATGAAATGCTTCAATGAAACAAAGCCTTACATGAAAAAGGGATTCTGGAGTACTGGTGCTGATAAGAGGATCATGCGCGTGGTGGTCGAAGTAATAAAGAAAATGAAAGTTCCTGTTTCAGTTCTTAACATAACACAGATGTCAGACTATCGAGTTGACGCTCACACAAAAGTTTACACTGAGACTGGAGGCAAACTACTAACAGATGAGCAAAAGGCCGATGTGCTGCACAACTCAGATTGTATACATTGGTGTCTGCCAGGAGTTCCGGATACATGGAATCAAATTTTTTTGGCAAATTTGTAG

Protein Analysis

435

Amino Acids

50.39

Weight (kDa)

8.78

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 89 - 144 2.1e-18 PMR5 N terminal Domain
PC-Esterase PF13839 146 - 433 2.6e-97 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01360 AT5G01360
fragaria_vesca FvH4_6g11230 FvH4_6g11230
malus_domestica MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica Prupe.6G279700_v2.0.a1
pyrus_communis pycom04g14210 pycom12g16280
rosa_chinensis RchiOBHm_Chr3g0462741
rosa_laevigata RLG00000024836
rosa_multiflora Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii Rroxscaffold_6G00417240
rosa_rugosa Rorug03G0058900
rosa_samantha Rh3DG122300
rosa_wichuraiana Rw3G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 917
AccBSI CCGCTC 1 cut(s) 795
AccI GTMKAC 2 cut(s) 909, 1246
AccII CGCG 2 cut(s) 591, 1080
AccIII TCCGGA 1 cut(s) 1270
AciI CCGC 1 cut(s) 795
AclWI GGATC 3 cut(s) 641, 654, 1079
AcoI YGGCCR 1 cut(s) 796
AcsI RAATTY 3 cut(s) 635, 1287, 1300
AcuI CTGAAG 2 cut(s) 449, 589
AfaI GTAC 2 cut(s) 620, 1054
AfiI CCNNNNNNNGG 2 cut(s) 409, 582
AgsI TTSAA 8 cut(s) 151, 234, 301, 548, 635, 772, 889, 1015
AjnI CCWGG 1 cut(s) 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 3 cut(s) 6, 55, 336
AluI AGCT 3 cut(s) 6, 55, 336
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 963, 1178
AlwI GGATC 3 cut(s) 641, 654, 1079
AlwNI CAGNNNCTG 2 cut(s) 182, 336
Aor13HI TCCGGA 1 cut(s) 1270
AoxI GGCC 5 cut(s) 314, 380, 796, 897, 1218
ApeKI GCWGC 4 cut(s) 176, 336, 418, 1228
ApoI RAATTY 3 cut(s) 635, 1287, 1300
Asp700I GAANNNNTTC 1 cut(s) 1010
AspLEI GCGC 4 cut(s) 582, 591, 593, 1080
AspS9I GGNCC 1 cut(s) 897
AsuC2I CCSGG 2 cut(s) 263, 584
BamHI GGATCC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 936
BbsI GAAGAC 3 cut(s) 595, 896, 934
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 188, 323, 430, 1215
BciT130I CCWGG 1 cut(s) 1263
BciVI GTATCC 1 cut(s) 1267
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 2 cut(s) 263, 584
BcoDI GTCTC 2 cut(s) 963, 1178
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 1267
BisI GCNGC 5 cut(s) 177, 337, 419, 796, 1229
BlsI GCNGC 5 cut(s) 178, 338, 420, 797, 1230
BmcAI AGTACT 1 cut(s) 1054
Bme1390I CCNGG 3 cut(s) 263, 584, 1263
BmgT120I GGNCC 1 cut(s) 897
BmiI GGNNCC 1 cut(s) 648
BmrFI CCNGG 3 cut(s) 263, 584, 1263
BmrI ACTGGG 4 cut(s) 418, 652, 826, 913
BmsI GCATC 1 cut(s) 188
BmuI ACTGGG 4 cut(s) 418, 652, 826, 913
BpiI GAAGAC 3 cut(s) 595, 896, 934
BplI GAGNNNNNCTC 2 cut(s) 653, 685
BpmI CTGGAG 3 cut(s) 771, 1069, 1209
Bpu10I CCTNAGC 1 cut(s) 7
BpuMI CCSGG 2 cut(s) 263, 584
BsaJI CCNNGG 3 cut(s) 213, 583, 612
BsaWI WCCGGW 1 cut(s) 1270
BsaXI ACNNNNNCTCC 4 cut(s) 943, 973, 1042, 1072
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 582
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 9 cut(s) 413, 647, 749, 754, 821, 908, 989, 1060, 1192
Bse3DI GCAATG 2 cut(s) 280, 434
BseAI TCCGGA 1 cut(s) 1270
BseBI CCWGG 1 cut(s) 1263
BseDI CCNNGG 3 cut(s) 213, 583, 612
BseGI GGATG 2 cut(s) 795, 1008
BseLI CCNNNNNNNGG 2 cut(s) 409, 582
BseMI GCAATG 2 cut(s) 280, 434
BseMII CTCAG 3 cut(s) 21, 1173, 1251
BseNI ACTGG 9 cut(s) 413, 647, 749, 754, 821, 908, 989, 1060, 1192
BsePI GCGCGC 1 cut(s) 589
BseRI GAGGAG 2 cut(s) 281, 988
BseXI GCAGC 4 cut(s) 188, 323, 430, 1215
BsgI GTGCAG 2 cut(s) 999, 1214
Bsh1236I CGCG 2 cut(s) 591, 1080
BshFI GGCC 5 cut(s) 316, 382, 798, 899, 1220
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 5 cut(s) 263, 383, 403, 583, 1271
BslI CCNNNNNNNGG 2 cut(s) 409, 582
BsmAI GTCTC 2 cut(s) 963, 1178
BsnI GGCC 5 cut(s) 316, 382, 798, 899, 1220
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 1270
Bsp143I GATC 4 cut(s) 93, 646, 804, 1071
BspACI CCGC 1 cut(s) 795
BspANI GGCC 5 cut(s) 316, 382, 798, 899, 1220
BspCNI CTCAG 3 cut(s) 20, 1174, 1250
BspEI TCCGGA 1 cut(s) 1270
BspFNI CGCG 2 cut(s) 591, 1080
BspLI GGNNCC 1 cut(s) 648
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 3 cut(s) 641, 654, 1079
BspQI GCTCTTC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 795
BsrDI GCAATG 2 cut(s) 280, 434
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 9 cut(s) 413, 647, 749, 754, 821, 908, 989, 1060, 1192
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 213, 583, 612
BssHII GCGCGC 1 cut(s) 589
BssMI GATC 4 cut(s) 93, 646, 804, 1071
BssNAI GTATAC 1 cut(s) 1247
BssSI CACGAG 1 cut(s) 936
BssT1I CCWWGG 2 cut(s) 213, 612
Bst1107I GTATAC 1 cut(s) 1247
Bst2BI CACGAG 1 cut(s) 936
Bst2UI CCWGG 1 cut(s) 1263
Bst4CI ACNGT 2 cut(s) 305, 573
Bst6I CTCTTC 2 cut(s) 166, 846
BstC8I GCNNGC 3 cut(s) 28, 591, 735
BstDEI CTNAG 3 cut(s) 7, 1182, 1237
BstF5I GGATG 2 cut(s) 795, 1008
BstFNI CGCG 2 cut(s) 591, 1080
BstHHI GCGC 4 cut(s) 582, 591, 593, 1080
BstKTI GATC 4 cut(s) 96, 649, 807, 1074
BstMAI GTCTC 2 cut(s) 963, 1178
BstMBI GATC 4 cut(s) 93, 646, 804, 1071
BstMWI GCNNNNNNNGC 4 cut(s) 586, 588, 734, 869
BstNI CCWGG 1 cut(s) 1263
BstNSI RCATGY 1 cut(s) 737
BstSCI CCNGG 3 cut(s) 261, 582, 1261
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 2 cut(s) 591, 1080
BstV1I GCAGC 4 cut(s) 188, 323, 430, 1215
BstV2I GAAGAC 3 cut(s) 595, 896, 934
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BstZ17I GTATAC 1 cut(s) 1247
BsuI GTATCC 1 cut(s) 1267
BsuRI GGCC 5 cut(s) 316, 382, 798, 899, 1220
BtsCI GGATG 2 cut(s) 795, 1008
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 4 cut(s) 21, 406, 742, 1179
Cac8I GCNNGC 3 cut(s) 28, 591, 735
CaiI CAGNNNCTG 2 cut(s) 182, 336
CfoI GCGC 4 cut(s) 582, 591, 593, 1080
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 897
CseI GACGC 1 cut(s) 1169
Csp6I GTAC 2 cut(s) 619, 1053
CviAII CATG 9 cut(s) 73, 460, 577, 734, 894, 970, 1033, 1075, 1278
CviQI GTAC 2 cut(s) 619, 1053
DdeI CTNAG 3 cut(s) 7, 1182, 1237
DpnI GATC 4 cut(s) 95, 648, 806, 1073
DpnII GATC 4 cut(s) 93, 646, 804, 1071
DrdI GACNNNNNNGTC 1 cut(s) 917
DseDI GACNNNNNNGTC 1 cut(s) 917
EaeI YGGCCR 1 cut(s) 796
Eam1104I CTCTTC 2 cut(s) 166, 846
EarI CTCTTC 2 cut(s) 166, 846
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 213, 612
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 449, 589
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 1261
EcoT14I CCWWGG 2 cut(s) 213, 612
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 213, 612
FaeI CATG 9 cut(s) 76, 463, 580, 737, 897, 973, 1036, 1078, 1281
FatI CATG 9 cut(s) 72, 459, 576, 733, 893, 969, 1032, 1074, 1277
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 2 cut(s) 909, 1246
Fnu4HI GCNGC 5 cut(s) 177, 337, 419, 796, 1229
FokI GGATG 2 cut(s) 802, 1015
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 5 cut(s) 177, 337, 419, 796, 1229
FspBI CTAG 1 cut(s) 441
GlaI GCGC 4 cut(s) 581, 590, 592, 1079
GluI GCNGC 5 cut(s) 177, 337, 419, 796, 1229
GsuI CTGGAG 3 cut(s) 771, 1069, 1209
HaeIII GGCC 5 cut(s) 316, 382, 798, 899, 1220
HapII CCGG 5 cut(s) 263, 383, 403, 583, 1271
HgaI GACGC 1 cut(s) 1169
HhaI GCGC 4 cut(s) 582, 591, 593, 1080
Hin1II CATG 9 cut(s) 76, 463, 580, 737, 897, 973, 1036, 1078, 1281
Hin6I GCGC 4 cut(s) 580, 589, 591, 1078
HinP1I GCGC 4 cut(s) 580, 589, 591, 1078
HincII GTYRAC 2 cut(s) 910, 1159
HindII GTYRAC 2 cut(s) 910, 1159
HinfI GANTC 9 cut(s) 230, 386, 392, 503, 548, 662, 719, 1044, 1282
HpaII CCGG 5 cut(s) 263, 383, 403, 583, 1271
Hpy166II GTNNAC 6 cut(s) 18, 108, 910, 1159, 1177, 1247
Hpy188I TCNGA 8 cut(s) 328, 391, 397, 468, 608, 673, 1147, 1240
Hpy188III TCNNGA 7 cut(s) 168, 347, 370, 452, 995, 1048, 1271
Hpy8I GTNNAC 6 cut(s) 18, 108, 910, 1159, 1177, 1247
HpyAV CCTTC 3 cut(s) 372, 836, 992
HpyCH4III ACNGT 2 cut(s) 305, 573
HpyCH4V TGCA 8 cut(s) 26, 209, 273, 432, 511, 737, 980, 1231
HpyF10VI GCNNNNNNNGC 4 cut(s) 586, 588, 734, 869
HpyF3I CTNAG 3 cut(s) 7, 1182, 1237
Hsp92II CATG 9 cut(s) 76, 463, 580, 737, 897, 973, 1036, 1078, 1281
HspAI GCGC 4 cut(s) 580, 589, 591, 1078
Kpn2I TCCGGA 1 cut(s) 1270
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 4 cut(s) 93, 646, 804, 1071
LguI GCTCTTC 1 cut(s) 166
Lsp1109I GCAGC 4 cut(s) 188, 323, 430, 1215
LweI GCATC 1 cut(s) 188
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 95, 648, 806, 1073
MbiI CCGCTC 1 cut(s) 795
MboI GATC 4 cut(s) 93, 646, 804, 1071
MfeI CAATTG 2 cut(s) 234, 630
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 6 cut(s) 117, 234, 630, 635, 1287, 1300
MlyI GAGTC 1 cut(s) 671
MmeI TCCRAC 4 cut(s) 162, 478, 690, 837
MnlI CCTC 9 cut(s) 41, 259, 477, 509, 570, 686, 966, 1062, 1184
MroI TCCGGA 1 cut(s) 1270
MroXI GAANNNNTTC 1 cut(s) 1010
MseI TTAA 2 cut(s) 447, 1128
MslI CAYNNNNRTG 2 cut(s) 953, 1079
MspI CCGG 5 cut(s) 263, 383, 403, 583, 1271
MspR9I CCNGG 3 cut(s) 263, 584, 1263
MunI CAATTG 2 cut(s) 234, 630
MvaI CCWGG 1 cut(s) 1263
MvnI CGCG 2 cut(s) 591, 1080
MwoI GCNNNNNNNGC 4 cut(s) 586, 588, 734, 869
NciI CCSGG 2 cut(s) 263, 584
NdeII GATC 4 cut(s) 93, 646, 804, 1071
NlaIII CATG 9 cut(s) 76, 463, 580, 737, 897, 973, 1036, 1078, 1281
NlaIV GGNNCC 1 cut(s) 648
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 737
PaeI GCATGC 1 cut(s) 737
PauI GCGCGC 1 cut(s) 589
PceI AGGCCT 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 1010
PfeI GAWTC 8 cut(s) 230, 386, 392, 503, 548, 719, 1044, 1282
PkrI GCNGC 5 cut(s) 178, 338, 420, 797, 1230
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 1261
PspGI CCWGG 1 cut(s) 1261
PspN4I GGNNCC 1 cut(s) 648
PspPI GGNCC 1 cut(s) 897
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 2 cut(s) 182, 336
PsuI RGATCY 1 cut(s) 646
PteI GCGCGC 1 cut(s) 589
RsaI GTAC 2 cut(s) 620, 1054
RsaNI GTAC 2 cut(s) 619, 1053
RseI CAYNNNNRTG 2 cut(s) 953, 1079
SacI GAGCTC 1 cut(s) 8
SalI GTCGAC 1 cut(s) 908
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 447, 1128
SatI GCNGC 5 cut(s) 177, 337, 419, 796, 1229
Sau3AI GATC 4 cut(s) 93, 646, 804, 1071
Sau96I GGNCC 1 cut(s) 897
ScaI AGTACT 1 cut(s) 1054
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 3 cut(s) 263, 584, 1263
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 8, 13, 43, 57, 338, 520, 562, 678
SfaNI GCATC 1 cut(s) 188
SfcI CTRYAG 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 953, 1079
SphI GCATGC 1 cut(s) 737
Sse9I AATT 6 cut(s) 117, 234, 630, 635, 1287, 1300
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 1 cut(s) 795
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 3 cut(s) 261, 582, 1261
StyI CCWWGG 2 cut(s) 213, 612
TaaI ACNGT 2 cut(s) 305, 573
TaqI TCGA 4 cut(s) 258, 909, 1089, 1153
TasI AATT 6 cut(s) 117, 234, 630, 635, 1287, 1300
TatI WGTACW 2 cut(s) 618, 1052
TauI GCSGC 1 cut(s) 798
TfiI GAWTC 8 cut(s) 230, 386, 392, 503, 548, 719, 1044, 1282
Tru1I TTAA 2 cut(s) 447, 1128
Tru9I TTAA 2 cut(s) 447, 1128
TscAI CASTG 4 cut(s) 28, 413, 749, 1186
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 4 cut(s) 176, 336, 418, 1228
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 7 cut(s) 50, 813, 864, 1019, 1032, 1049, 1121
TspRI CASTG 4 cut(s) 28, 413, 749, 1186
XapI RAATTY 3 cut(s) 635, 1287, 1300
XceI RCATGY 1 cut(s) 737
XmiI GTMKAC 2 cut(s) 909, 1246
XmnI GAANNNNTTC 1 cut(s) 1010
XspI CTAG 1 cut(s) 441
ZrmI AGTACT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.