FvH4_6g11230

Protein trichome birefringence-like 3

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
6688721 .. 6691396
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11230.t2

Sequence Viewer

Length: 1308 bp
ATGAGCTCAGGACAGTCTACCACTGCAGGCACAATGAAGGCCTTTAGAGGAAAACTACATCTTCCTATTATCATGGTCTGTGCTATTGCCTTGATCAGTCTCTTGTATACTGAAAGAATTAGTATTATTCTTTCTTCCAACCCTTTTTTCAAGCATAAATCCTGTTCCAGAAGAGCAGCATCTATAACAAAAAAGTATGATAGAAATGCTACAGAAGAAAAGATAGATGCTTCAATTGTAGATGATAGGTTTGTGTTCGACCCGGAGGAATGTAATGTTGAGCATGGAAAATGGGTGTTCAACCGTTCAATCAAGCCTTTTTACTCGGACAGAAGTTGTCCATATCTTGATAGGCAAGTTTCTTGTGTCAAAAATGGAAGACCGGATTCTGATTCTGACTACCGGCACTGGGAATGGCAGCCAGAAGATTGCACATTGCCTAGATTTAATCCAGAACTCATGCTTGAGAAAATTCGTAATAAGAGGCTAATGTTTGTTGGGGATTCTTTGCAAAGAGGTCAATGGCAATCTTTAGTCTGTATGGTTGAATCCATCATACCTCAAGACAAACAGTCCATGCGCCGGGGGCGCGCTCTTTCAGTCTTCACAGCCAAAGAATACAATGCTACAATTGAATTTTACTGGGATCCATTTCTGGTAGAGTCCAATTCTGACATCCACATAGTTGGAAATCCAAAGGAAAGAATACTAAAAGTGGATTCAGTTGACAAGCATGCAAAACACTGGACTGGAGTAGATATCCTTGTCTTCAATACTTATGTATGGTGGATGAGCGGCTATACGATCAAGTCATACTGGGGTTCATTTCCAAATGGGGAAGAAGGATATGAAGAGTTGGAAGCAGTAGTTGCATACAGAATAGCATTGAAGACATGGGCCAACTGGGTCGACACGAATGTCAATCCAAACAAGACTCGTGTCTTCTTCACTTCTATGTCTCCTACACACATAAGGAATGCAGACTGGAACAATCCAGAAGGGATGAGATGTTTCAATGAAACAAAGCCTTACTTGAAAAAGGGATTCTGGAGTACTGGTGCTGATAAGAGGATCATGCGCGTGGTGGTCGAAGTGATAAAGAAAATGAAAGTTCCTGTTTCAGTTCTTAACATAACACAGATGTCAGATCAACGAATTGACGCTCACACAAAAGTTTACACAGAGACTGGAGGCAAAGTACTAACAGATGAGCAAAAGGCAGATGTGCTACACAACTCAGATTGTATACATTGGTGTCTGCCAGGAGTTCCAGATACATGGAATCAAATTTTTTTGGCAAATTTGTAG

Protein Analysis

436

Amino Acids

50.33

Weight (kDa)

8.54

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 78 - 133 2e-18 PMR5 N terminal Domain
PC-Esterase PF13839 135 - 422 8.5e-98 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01360 AT5G01360
fragaria_vesca FvH4_6g11230 FvH4_6g11230
malus_domestica MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica Prupe.6G279700_v2.0.a1
pyrus_communis pycom04g14210 pycom12g16280
rosa_chinensis RchiOBHm_Chr3g0462741
rosa_laevigata RLG00000024836
rosa_multiflora Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii Rroxscaffold_6G00417240
rosa_rugosa Rorug03G0058900
rosa_samantha Rh3DG122300
rosa_wichuraiana Rw3G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 917
AccBSI CCGCTC 1 cut(s) 795
AccI GTMKAC 4 cut(s) 17, 107, 909, 1246
AccII CGCG 2 cut(s) 591, 1080
AciI CCGC 1 cut(s) 795
AclWI GGATC 3 cut(s) 641, 654, 1079
AcsI RAATTY 4 cut(s) 471, 635, 1287, 1300
AfaI GTAC 2 cut(s) 1054, 1200
AfiI CCNNNNNNNGG 2 cut(s) 409, 582
AhdI GACNNNNNGTC 1 cut(s) 571
AjnI CCWGG 1 cut(s) 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 104, 963, 1178
AlwI GGATC 3 cut(s) 641, 654, 1079
AlwNI CAGNNNCTG 1 cut(s) 1187
AoxI GGCC 2 cut(s) 39, 897
ApeKI GCWGC 2 cut(s) 176, 418
ApoI RAATTY 4 cut(s) 471, 635, 1287, 1300
AspLEI GCGC 4 cut(s) 582, 591, 593, 1080
AspS9I GGNCC 1 cut(s) 897
AsuC2I CCSGG 2 cut(s) 263, 584
BamHI GGATCC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 936
BbsI GAAGAC 5 cut(s) 385, 595, 760, 896, 934
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 188, 430
BccI CCATC 1 cut(s) 560
BciT130I CCWGG 1 cut(s) 1263
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 2 cut(s) 263, 584
BcoDI GTCTC 3 cut(s) 104, 963, 1178
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 2 cut(s) 24, 210
BisI GCNGC 3 cut(s) 177, 419, 796
BlsI GCNGC 3 cut(s) 178, 420, 797
BmcAI AGTACT 2 cut(s) 1054, 1200
Bme1390I CCNGG 3 cut(s) 263, 584, 1263
BmeRI GACNNNNNGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 897
BmiI GGNNCC 1 cut(s) 648
BmrFI CCNGG 3 cut(s) 263, 584, 1263
BmrI ACTGGG 4 cut(s) 418, 652, 826, 913
BmsI GCATC 2 cut(s) 188, 217
BmuI ACTGGG 4 cut(s) 418, 652, 826, 913
BoxI GACNNNNGTC 1 cut(s) 938
BpiI GAAGAC 5 cut(s) 385, 595, 760, 896, 934
BpmI CTGGAG 3 cut(s) 771, 1069, 1209
Bpu10I CCTNAGC 1 cut(s) 7
BpuEI CTTGAG 2 cut(s) 485, 546
BpuMI CCSGG 2 cut(s) 263, 584
BsaJI CCNNGG 1 cut(s) 583
BsaWI WCCGGW 1 cut(s) 382
BsaXI ACNNNNNCTCC 4 cut(s) 1042, 1072, 1182, 1212
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 582
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 9 cut(s) 413, 647, 749, 754, 821, 908, 989, 1060, 1192
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 1263
BseDI CCNNGG 1 cut(s) 583
BseGI GGATG 3 cut(s) 675, 795, 1008
BseLI CCNNNNNNNGG 2 cut(s) 409, 582
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 2 cut(s) 21, 1251
BseNI ACTGG 9 cut(s) 413, 647, 749, 754, 821, 908, 989, 1060, 1192
BsePI GCGCGC 1 cut(s) 589
BseXI GCAGC 2 cut(s) 188, 430
Bsh1236I CGCG 2 cut(s) 591, 1080
BshFI GGCC 2 cut(s) 41, 899
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 4 cut(s) 263, 383, 403, 583
BslI CCNNNNNNNGG 2 cut(s) 409, 582
BsmAI GTCTC 3 cut(s) 104, 963, 1178
BsmI GAATGC 1 cut(s) 982
BsnI GGCC 2 cut(s) 41, 899
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 93, 646, 804, 1071, 1147
BspACI CCGC 1 cut(s) 795
BspANI GGCC 2 cut(s) 41, 899
BspCNI CTCAG 2 cut(s) 20, 1250
BspFNI CGCG 2 cut(s) 591, 1080
BspLI GGNNCC 1 cut(s) 648
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 3 cut(s) 641, 654, 1079
BspQI GCTCTTC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 795
BsrDI GCAATG 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 9 cut(s) 413, 647, 749, 754, 821, 908, 989, 1060, 1192
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 583
BssHII GCGCGC 1 cut(s) 589
BssMI GATC 5 cut(s) 93, 646, 804, 1071, 1147
BssNAI GTATAC 2 cut(s) 108, 1247
BssSI CACGAG 1 cut(s) 936
Bst1107I GTATAC 2 cut(s) 108, 1247
Bst2BI CACGAG 1 cut(s) 936
Bst2UI CCWGG 1 cut(s) 1263
Bst4CI ACNGT 3 cut(s) 15, 305, 573
Bst6I CTCTTC 2 cut(s) 166, 846
BstAPI GCANNNNNTGC 1 cut(s) 869
BstC8I GCNNGC 3 cut(s) 28, 591, 735
BstDEI CTNAG 2 cut(s) 7, 1237
BstF5I GGATG 3 cut(s) 675, 795, 1008
BstFNI CGCG 2 cut(s) 591, 1080
BstHHI GCGC 4 cut(s) 582, 591, 593, 1080
BstKTI GATC 5 cut(s) 96, 649, 807, 1074, 1150
BstMAI GTCTC 3 cut(s) 104, 963, 1178
BstMBI GATC 5 cut(s) 93, 646, 804, 1071, 1147
BstMWI GCNNNNNNNGC 3 cut(s) 586, 588, 869
BstNI CCWGG 1 cut(s) 1263
BstNSI RCATGY 1 cut(s) 737
BstPAI GACNNNNGTC 1 cut(s) 938
BstSCI CCNGG 3 cut(s) 261, 582, 1261
BstSFI CTRYAG 2 cut(s) 24, 210
BstUI CGCG 2 cut(s) 591, 1080
BstV1I GCAGC 2 cut(s) 188, 430
BstV2I GAAGAC 5 cut(s) 385, 595, 760, 896, 934
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 2 cut(s) 686, 1278
BstYI RGATCY 1 cut(s) 646
BstZ17I GTATAC 2 cut(s) 108, 1247
BsuRI GGCC 2 cut(s) 41, 899
BtsCI GGATG 3 cut(s) 675, 795, 1008
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 406, 742
Cac8I GCNNGC 3 cut(s) 28, 591, 735
CaiI CAGNNNCTG 1 cut(s) 1187
CfoI GCGC 4 cut(s) 582, 591, 593, 1080
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 897
CseI GACGC 1 cut(s) 1169
Csp6I GTAC 2 cut(s) 1053, 1199
CviAII CATG 8 cut(s) 73, 284, 460, 577, 734, 894, 1075, 1278
CviJI RGCY 9 cut(s) 6, 41, 316, 421, 487, 611, 798, 899, 1027
CviKI_1 RGCY 9 cut(s) 6, 41, 316, 421, 487, 611, 798, 899, 1027
CviQI GTAC 2 cut(s) 1053, 1199
DdeI CTNAG 2 cut(s) 7, 1237
DpnI GATC 5 cut(s) 95, 648, 806, 1073, 1149
DpnII GATC 5 cut(s) 93, 646, 804, 1071, 1147
DrdI GACNNNNNNGTC 1 cut(s) 917
DriI GACNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 917
Eam1104I CTCTTC 2 cut(s) 166, 846
Eam1105I GACNNNNNGTC 1 cut(s) 571
EarI CTCTTC 2 cut(s) 166, 846
Ecl136II GAGCTC 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 8
Eco32I GATATC 1 cut(s) 760
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 1261
EcoRV GATATC 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 8 cut(s) 76, 287, 463, 580, 737, 897, 1078, 1281
FalI AAGNNNNNCTT 2 cut(s) 1016, 1048
FatI CATG 8 cut(s) 72, 283, 459, 576, 733, 893, 1074, 1277
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 4 cut(s) 17, 107, 909, 1246
Fnu4HI GCNGC 3 cut(s) 177, 419, 796
FokI GGATG 3 cut(s) 662, 802, 1015
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 177, 419, 796
FspBI CTAG 1 cut(s) 441
GlaI GCGC 4 cut(s) 581, 590, 592, 1079
GluI GCNGC 3 cut(s) 177, 419, 796
GsuI CTGGAG 3 cut(s) 771, 1069, 1209
HaeIII GGCC 2 cut(s) 41, 899
HapII CCGG 4 cut(s) 263, 383, 403, 583
HgaI GACGC 1 cut(s) 1169
HhaI GCGC 4 cut(s) 582, 591, 593, 1080
Hin1II CATG 8 cut(s) 76, 287, 463, 580, 737, 897, 1078, 1281
Hin6I GCGC 4 cut(s) 580, 589, 591, 1078
HinP1I GCGC 4 cut(s) 580, 589, 591, 1078
HincII GTYRAC 2 cut(s) 727, 910
HindII GTYRAC 2 cut(s) 727, 910
HinfI GANTC 9 cut(s) 386, 392, 503, 548, 662, 719, 934, 1044, 1282
HpaII CCGG 4 cut(s) 263, 383, 403, 583
Hpy166II GTNNAC 6 cut(s) 18, 108, 727, 910, 1177, 1247
Hpy188I TCNGA 6 cut(s) 328, 391, 397, 673, 1147, 1240
Hpy188III TCNNGA 8 cut(s) 9, 168, 347, 452, 563, 995, 1048, 1271
Hpy8I GTNNAC 6 cut(s) 18, 108, 727, 910, 1177, 1247
HpyAV CCTTC 3 cut(s) 31, 836, 992
HpyCH4III ACNGT 3 cut(s) 15, 305, 573
HpyCH4V TGCA 6 cut(s) 26, 432, 511, 737, 872, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 586, 588, 869
HpyF3I CTNAG 2 cut(s) 7, 1237
Hsp92II CATG 8 cut(s) 76, 287, 463, 580, 737, 897, 1078, 1281
HspAI GCGC 4 cut(s) 580, 589, 591, 1078
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 5 cut(s) 93, 646, 804, 1071, 1147
LguI GCTCTTC 1 cut(s) 166
Lsp1109I GCAGC 2 cut(s) 188, 430
LweI GCATC 2 cut(s) 188, 217
MaeI CTAG 1 cut(s) 441
MalI GATC 5 cut(s) 95, 648, 806, 1073, 1149
MbiI CCGCTC 1 cut(s) 795
MboI GATC 5 cut(s) 93, 646, 804, 1071, 1147
MfeI CAATTG 2 cut(s) 234, 630
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 9 cut(s) 117, 234, 471, 630, 635, 667, 1155, 1287, 1300
MlyI GAGTC 2 cut(s) 671, 928
MmeI TCCRAC 3 cut(s) 162, 667, 837
MnlI CCTC 7 cut(s) 41, 259, 477, 509, 570, 1062, 1184
MseI TTAA 2 cut(s) 447, 1128
MslI CAYNNNNRTG 2 cut(s) 953, 1079
MspI CCGG 4 cut(s) 263, 383, 403, 583
MspR9I CCNGG 3 cut(s) 263, 584, 1263
MunI CAATTG 2 cut(s) 234, 630
Mva1269I GAATGC 1 cut(s) 982
MvaI CCWGG 1 cut(s) 1263
MvnI CGCG 2 cut(s) 591, 1080
MwoI GCNNNNNNNGC 3 cut(s) 586, 588, 869
NciI CCSGG 2 cut(s) 263, 584
NdeII GATC 5 cut(s) 93, 646, 804, 1071, 1147
NlaIII CATG 8 cut(s) 76, 287, 463, 580, 737, 897, 1078, 1281
NlaIV GGNNCC 1 cut(s) 648
NspI RCATGY 1 cut(s) 737
PaeI GCATGC 1 cut(s) 737
PauI GCGCGC 1 cut(s) 589
PceI AGGCCT 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 166
PctI GAATGC 1 cut(s) 982
PfeI GAWTC 7 cut(s) 386, 392, 503, 548, 719, 1044, 1282
PkrI GCNGC 3 cut(s) 178, 420, 797
PleI GAGTC 2 cut(s) 670, 928
PpsI GAGTC 2 cut(s) 670, 928
PshAI GACNNNNGTC 1 cut(s) 938
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 1261
PspGI CCWGG 1 cut(s) 1261
PspN4I GGNNCC 1 cut(s) 648
PspPI GGNCC 1 cut(s) 897
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 1187
PsuI RGATCY 1 cut(s) 646
PteI GCGCGC 1 cut(s) 589
RsaI GTAC 2 cut(s) 1054, 1200
RsaNI GTAC 2 cut(s) 1053, 1199
RseI CAYNNNNRTG 2 cut(s) 953, 1079
SacI GAGCTC 1 cut(s) 8
SalI GTCGAC 1 cut(s) 908
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 447, 1128
SatI GCNGC 3 cut(s) 177, 419, 796
Sau3AI GATC 5 cut(s) 93, 646, 804, 1071, 1147
Sau96I GGNCC 1 cut(s) 897
ScaI AGTACT 2 cut(s) 1054, 1200
SchI GAGTC 2 cut(s) 671, 928
ScrFI CCNGG 3 cut(s) 263, 584, 1263
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 8, 251, 520, 562
SfaNI GCATC 2 cut(s) 188, 217
SfcI CTRYAG 2 cut(s) 24, 210
SmiMI CAYNNNNRTG 2 cut(s) 953, 1079
SmlI CTYRAG 2 cut(s) 464, 561
SmoI CTYRAG 2 cut(s) 464, 561
SphI GCATGC 1 cut(s) 737
Sse9I AATT 9 cut(s) 117, 234, 471, 630, 635, 667, 1155, 1287, 1300
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 1 cut(s) 795
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 3 cut(s) 261, 582, 1261
TaaI ACNGT 3 cut(s) 15, 305, 573
TaqI TCGA 3 cut(s) 258, 909, 1089
TasI AATT 9 cut(s) 117, 234, 471, 630, 635, 667, 1155, 1287, 1300
TatI WGTACW 2 cut(s) 1052, 1198
TauI GCSGC 1 cut(s) 798
TfiI GAWTC 7 cut(s) 386, 392, 503, 548, 719, 1044, 1282
Tru1I TTAA 2 cut(s) 447, 1128
Tru9I TTAA 2 cut(s) 447, 1128
TscAI CASTG 3 cut(s) 28, 413, 749
TseI GCWGC 2 cut(s) 176, 418
TspDTI ATGAA 5 cut(s) 50, 813, 864, 1032, 1121
TspRI CASTG 3 cut(s) 28, 413, 749
XapI RAATTY 4 cut(s) 471, 635, 1287, 1300
XceI RCATGY 1 cut(s) 737
XmiI GTMKAC 4 cut(s) 17, 107, 909, 1246
XspI CTAG 1 cut(s) 441
ZrmI AGTACT 2 cut(s) 1054, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.