Prupe.6G279700_v2.0.a1

Protein trichome birefringence-like 3

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
26185039 .. 26187246
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G279700.1

Sequence Viewer

Length: 1299 bp
ATGAGCTTAGCACCTTCCACTTCAGGCACAATGAAGGCCTTTAGAGGAAAGTTACATTTCCCAATTATCATGCTCTGCACTATTGCCTTCATCAGTTTTCTTTACACTGAAAGAATTAGTATACTTCTTTCTTCAAACCCTTTTTTCAAGATTAAGTCCTGTTCCAAAAGAGGTTCTGTCATAAAAAATGATGATCATAGAAATGCTACAGAGGATAAGATAGACGGTTCTGTAGTAGATGATAGATTTGTGTTTGACCCGGAGGAGTGCAGTGTTGAGAATGGAAAGTGGGTGTTCAACCGTTCTATCAAGCCTCTTTACACAGACAGAAGCTGCCCATATCTTGACAGGCAAGTTTCTTGTCACAAGAATGGACGGCCGGATTCTGACTATCTTCACTGGGAATGGCAGATAGAAGACTGCACCTTGCCAAGATTTGATCCAGAAGTTACTCTTGAGAAACTTAGGGGCAAGAGGCTATTGTTTGTTGGGGATTCATTGCAAAGAGGTCAATGGCAATCTTTGGTCTGCATGGTTGAATTCATCATACCTGAGGACCAAAAGTCCATTCGACGAGGGCGCGCTCATACAGTCTTCAAAGCCAAGGAATATAATGCTAGTATTGAATTCTACTGGGCTCCATTTCTGGTTGAGTCGAATTCTGACCTCCATATAATAGGAAATCCGAAGGAAAGAATACTAAAAGTGGATTCAATTGCCAAGCATGCCAAACACTGGGAAGGAGTTGATATCCTTGTGTTCAATACTTATGTATGGTGGATGAGCGGCTATACCATCAAATCATACTGGGGCTCATTTCCAAATGGGGAAGAAGGGTATGAAGAACTAGAAGCACCAGCTGCCTACAGAATAGCATTGAAAACATGGGCCAACTGGGTTGACTCAAATGTCAATCCCAACAAAACTCGAGTCTTTTTCACTACCATGTCCCCTACACACATGAGAAGTGCAGACTGGGACAACCCAGAAGGGATGAGATGCTTCAATGAGACAAAGCCATTCTTGAAGAAGGGGTTCTGGGGAACTGGTTCAGACAAGAGGGTCATGCGCGTCGTGGCTGAAGTGTTGAAGAGAATGAAAGTTCCTGTTTCAGTCCTGAACGTAACCCAGATGTCAAATCACAGAGTTGATGCTCACACAAAAGTTTACACCGAGACCGGAGGCAAAGTACTAACAGATGAGCAAAAAGCTGATGTGCTGCACAATTCAGATTGCATACATTGGTGTCTTCCAGGAGTTCCAGATACATGGAACCAAATATTTTTGGCACATTTGTAG

Protein Analysis

433

Amino Acids

49.9

Weight (kDa)

8.22

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01360 AT5G01360
fragaria_vesca FvH4_6g11230 FvH4_6g11230
malus_domestica MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica Prupe.6G279700_v2.0.a1
pyrus_communis pycom04g14210 pycom12g16280
rosa_chinensis RchiOBHm_Chr3g0462741
rosa_laevigata RLG00000024836
rosa_multiflora Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii Rroxscaffold_6G00417240
rosa_rugosa Rorug03G0058900
rosa_samantha Rh3DG122300
rosa_wichuraiana Rw3G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 908, 1061
AccB7I CCANNNNNTGG 1 cut(s) 735
AccBSI CCGCTC 1 cut(s) 786
AccI GTMKAC 1 cut(s) 121
AccII CGCG 2 cut(s) 582, 1071
AciI CCGC 1 cut(s) 786
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 3 cut(s) 539, 626, 658
AcuI CTGAAG 2 cut(s) 6, 1101
AfaI GTAC 1 cut(s) 1191
AfiI CCNNNNNNNGG 1 cut(s) 735
AhdI GACNNNNNGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 1252
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 4 cut(s) 6, 333, 860, 1211
AluI AGCT 4 cut(s) 6, 333, 860, 1211
Alw26I GTCTC 2 cut(s) 1004, 1169
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 927
AoxI GGCC 3 cut(s) 36, 377, 888
ApeKI GCWGC 3 cut(s) 333, 860, 1219
ApoI RAATTY 3 cut(s) 539, 626, 658
ArsI GACNNNNNNTTYG 2 cut(s) 915, 947
Asp700I GAANNNNTTC 2 cut(s) 1034, 1048
AspLEI GCGC 3 cut(s) 582, 584, 1071
AspS9I GGNCC 2 cut(s) 556, 888
AsuC2I CCSGG 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 927
AvaII GGWCC 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 552
BanII GRGCYC 2 cut(s) 640, 815
BbsI GAAGAC 3 cut(s) 423, 586, 1241
BbvI GCAGC 3 cut(s) 320, 847, 1206
BccI CCATC 1 cut(s) 803
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 1254
BclI TGATCA 1 cut(s) 193
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 1004, 1169
BfaI CTAG 2 cut(s) 618, 848
BfmI CTRYAG 3 cut(s) 207, 231, 865
BisI GCNGC 4 cut(s) 334, 787, 861, 1220
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 4 cut(s) 335, 788, 862, 1221
BmcAI AGTACT 1 cut(s) 1191
Bme1390I CCNGG 2 cut(s) 260, 1254
Bme18I GGWCC 1 cut(s) 556
BmeRI GACNNNNNGTC 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 927
BmgT120I GGNCC 2 cut(s) 556, 888
BmiI GGNNCC 2 cut(s) 639, 1274
BmrFI CCNGG 2 cut(s) 260, 1254
BmrI ACTGGG 6 cut(s) 409, 643, 745, 817, 904, 985
BmsI GCATC 2 cut(s) 989, 1141
BmuI ACTGGG 6 cut(s) 409, 643, 745, 817, 904, 985
BpiI GAAGAC 3 cut(s) 423, 586, 1241
Bpu1102I GCTNAGC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 1169
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 1 cut(s) 1178
BsaXI ACNNNNNCTCC 2 cut(s) 1173, 1203
Bsc4I CCNNNNNNNGG 1 cut(s) 735
Bse1I ACTGG 7 cut(s) 404, 638, 740, 812, 899, 980, 1051
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 497
BseBI CCWGG 1 cut(s) 1254
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 2 cut(s) 786, 999
BseLI CCNNNNNNNGG 1 cut(s) 735
BseMI GCAATG 1 cut(s) 497
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 7 cut(s) 404, 638, 740, 812, 899, 980, 1051
BsePI GCGCGC 1 cut(s) 580
BseRI GAGGAG 1 cut(s) 278
BseX3I CGGCCG 1 cut(s) 377
BseXI GCAGC 3 cut(s) 320, 847, 1206
BsgI GTGCAG 5 cut(s) 61, 289, 406, 990, 1205
Bsh1236I CGCG 2 cut(s) 582, 1071
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 3 cut(s) 38, 379, 890
BsiEI CGRYCG 1 cut(s) 380
BsiHKCI CYCGRG 1 cut(s) 927
BsiSI CCGG 3 cut(s) 260, 380, 1179
BslFI GGGAC 2 cut(s) 934, 992
BslI CCNNNNNNNGG 1 cut(s) 735
BsmAI GTCTC 2 cut(s) 1004, 1169
BsmFI GGGAC 2 cut(s) 934, 992
BsnI GGCC 3 cut(s) 38, 379, 890
Bso31I GGTCTC 1 cut(s) 1169
BsoBI CYCGRG 1 cut(s) 927
Bsp1286I GDGCHC 2 cut(s) 640, 815
Bsp143I GATC 2 cut(s) 193, 439
Bsp1720I GCTNAGC 1 cut(s) 7
BspACI CCGC 1 cut(s) 786
BspANI GGCC 3 cut(s) 38, 379, 890
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 2 cut(s) 582, 1071
BspLI GGNNCC 2 cut(s) 639, 1274
BspPI GGATC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 1169
BsrBI CCGCTC 1 cut(s) 786
BsrDI GCAATG 1 cut(s) 497
BsrI ACTGG 7 cut(s) 404, 638, 740, 812, 899, 980, 1051
BssECI CCNNGG 1 cut(s) 603
BssHII GCGCGC 1 cut(s) 580
BssMI GATC 2 cut(s) 193, 439
BssNAI GTATAC 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 603
Bst1107I GTATAC 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 1254
Bst4CI ACNGT 3 cut(s) 227, 302, 592
Bst6I CTCTTC 1 cut(s) 1085
BstAPI GCANNNNNTGC 1 cut(s) 860
BstC8I GCNNGC 2 cut(s) 582, 726
BstDEI CTNAG 3 cut(s) 7, 464, 552
BstF5I GGATG 2 cut(s) 786, 999
BstFNI CGCG 2 cut(s) 582, 1071
BstHHI GCGC 3 cut(s) 582, 584, 1071
BstKTI GATC 2 cut(s) 196, 442
BstMAI GTCTC 2 cut(s) 1004, 1169
BstMBI GATC 2 cut(s) 193, 439
BstMCI CGRYCG 1 cut(s) 380
BstMWI GCNNNNNNNGC 2 cut(s) 725, 860
BstNI CCWGG 1 cut(s) 1254
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 2 cut(s) 258, 1252
BstSFI CTRYAG 3 cut(s) 207, 231, 865
BstUI CGCG 2 cut(s) 582, 1071
BstV1I GCAGC 3 cut(s) 320, 847, 1206
BstV2I GAAGAC 3 cut(s) 423, 586, 1241
BstXI CCANNNNNNTGG 1 cut(s) 1269
BstZ17I GTATAC 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 377
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 3 cut(s) 38, 379, 890
BtsCI GGATG 2 cut(s) 786, 999
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 4 cut(s) 105, 277, 397, 733
Cac8I GCNNGC 2 cut(s) 582, 726
CaiI CAGNNNCTG 1 cut(s) 333
CfoI GCGC 3 cut(s) 582, 584, 1071
Cfr13I GGNCC 2 cut(s) 556, 888
CseI GACGC 1 cut(s) 1060
Csp6I GTAC 1 cut(s) 1190
CviAII CATG 8 cut(s) 70, 532, 725, 885, 946, 961, 1066, 1269
CviQI GTAC 1 cut(s) 1190
DdeI CTNAG 3 cut(s) 7, 464, 552
DpnI GATC 2 cut(s) 195, 441
DpnII GATC 2 cut(s) 193, 439
DrdI GACNNNNNNGTC 2 cut(s) 908, 1061
DriI GACNNNNNGTC 1 cut(s) 562
DseDI GACNNNNNNGTC 2 cut(s) 908, 1061
EaeI YGGCCR 1 cut(s) 377
EagI CGGCCG 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 1085
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 1085
EclXI CGGCCG 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 38
Eco24I GRGCYC 2 cut(s) 640, 815
Eco31I GGTCTC 1 cut(s) 1169
Eco32I GATATC 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 556
Eco52I CGGCCG 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 6, 1101
Eco81I CCTNAGG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 927
EcoRI GAATTC 3 cut(s) 539, 626, 658
EcoRII CCWGG 1 cut(s) 1252
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 2 cut(s) 640, 815
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 8 cut(s) 73, 535, 728, 888, 949, 964, 1069, 1272
FalI AAGNNNNNCTT 4 cut(s) 438, 470, 1007, 1039
FaqI GGGAC 2 cut(s) 934, 992
FatI CATG 8 cut(s) 69, 531, 724, 884, 945, 960, 1065, 1268
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 4 cut(s) 334, 787, 861, 1220
FokI GGATG 2 cut(s) 793, 1006
FriOI GRGCYC 2 cut(s) 640, 815
Fsp4HI GCNGC 4 cut(s) 334, 787, 861, 1220
FspBI CTAG 2 cut(s) 618, 848
GlaI GCGC 3 cut(s) 581, 583, 1070
GluI GCNGC 4 cut(s) 334, 787, 861, 1220
HaeIII GGCC 3 cut(s) 38, 379, 890
HapII CCGG 3 cut(s) 260, 380, 1179
HgaI GACGC 1 cut(s) 1060
HhaI GCGC 3 cut(s) 582, 584, 1071
Hin1II CATG 8 cut(s) 73, 535, 728, 888, 949, 964, 1069, 1272
Hin6I GCGC 3 cut(s) 580, 582, 1069
HinP1I GCGC 3 cut(s) 580, 582, 1069
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HinfI GANTC 6 cut(s) 383, 494, 653, 710, 902, 930
HpaII CCGG 3 cut(s) 260, 380, 1179
Hpy166II GTNNAC 3 cut(s) 122, 901, 1168
Hpy188I TCNGA 5 cut(s) 388, 664, 687, 1054, 1231
Hpy188III TCNNGA 7 cut(s) 148, 344, 443, 455, 1024, 1117, 1262
Hpy8I GTNNAC 3 cut(s) 122, 901, 1168
Hpy99I CGWCG 2 cut(s) 576, 1076
HpyAV CCTTC 8 cut(s) 24, 28, 97, 682, 734, 827, 983, 1024
HpyCH4III ACNGT 3 cut(s) 227, 302, 592
HpyCH4IV ACGT 1 cut(s) 1122
HpyCH4V TGCA 8 cut(s) 78, 270, 423, 502, 531, 971, 1222, 1236
HpyF10VI GCNNNNNNNGC 2 cut(s) 725, 860
HpyF3I CTNAG 3 cut(s) 7, 464, 552
HpySE526I ACGT 1 cut(s) 1122
Hsp92II CATG 8 cut(s) 73, 535, 728, 888, 949, 964, 1069, 1272
HspAI GCGC 3 cut(s) 580, 582, 1069
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 193, 439
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 3 cut(s) 320, 847, 1206
LweI GCATC 2 cut(s) 989, 1141
MaeI CTAG 2 cut(s) 618, 848
MaeII ACGT 1 cut(s) 1122
MaeIII GTNAC 4 cut(s) 51, 362, 448, 1123
MalI GATC 2 cut(s) 195, 441
MbiI CCGCTC 1 cut(s) 786
MboI GATC 2 cut(s) 193, 439
MboII GAAGA 9 cut(s) 123, 386, 428, 586, 842, 854, 1039, 1102, 1241
MfeI CAATTG 1 cut(s) 714
MhlI GDGCHC 2 cut(s) 640, 815
MluCI AATT 7 cut(s) 63, 114, 539, 626, 658, 714, 1225
MlyI GAGTC 3 cut(s) 662, 896, 939
MroXI GAANNNNTTC 2 cut(s) 1034, 1048
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 3 cut(s) 201, 369, 944
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 3 cut(s) 260, 380, 1179
MspR9I CCNGG 2 cut(s) 260, 1254
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 1 cut(s) 1254
MvnI CGCG 2 cut(s) 582, 1071
MwoI GCNNNNNNNGC 2 cut(s) 725, 860
NciI CCSGG 1 cut(s) 260
NdeII GATC 2 cut(s) 193, 439
NlaIII CATG 8 cut(s) 73, 535, 728, 888, 949, 964, 1069, 1272
NlaIV GGNNCC 2 cut(s) 639, 1274
NmuCI GTSAC 1 cut(s) 362
NspI RCATGY 1 cut(s) 728
PaeI GCATGC 1 cut(s) 728
PaeR7I CTCGAG 1 cut(s) 927
PauI GCGCGC 1 cut(s) 580
PceI AGGCCT 1 cut(s) 38
PdmI GAANNNNTTC 2 cut(s) 1034, 1048
PfeI GAWTC 3 cut(s) 383, 494, 710
PflMI CCANNNNNTGG 1 cut(s) 735
PfoI TCCNGGA 1 cut(s) 1252
PkrI GCNGC 4 cut(s) 335, 788, 862, 1221
PleI GAGTC 3 cut(s) 661, 896, 938
PpsI GAGTC 3 cut(s) 661, 896, 938
Psp6I CCWGG 1 cut(s) 1252
PspGI CCWGG 1 cut(s) 1252
PspN4I GGNNCC 2 cut(s) 639, 1274
PspPI GGNCC 2 cut(s) 556, 888
PspXI VCTCGAGB 1 cut(s) 927
PstNI CAGNNNCTG 1 cut(s) 333
PteI GCGCGC 1 cut(s) 580
PvuII CAGCTG 1 cut(s) 860
RsaI GTAC 1 cut(s) 1191
RsaNI GTAC 1 cut(s) 1190
RseI CAYNNNNRTG 3 cut(s) 201, 369, 944
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 4 cut(s) 334, 787, 861, 1220
Sau3AI GATC 2 cut(s) 193, 439
Sau96I GGNCC 2 cut(s) 556, 888
ScaI AGTACT 1 cut(s) 1191
SchI GAGTC 3 cut(s) 662, 896, 939
ScrFI CCNGG 2 cut(s) 260, 1254
SduI GDGCHC 2 cut(s) 640, 815
SfaNI GCATC 2 cut(s) 989, 1141
SfcI CTRYAG 3 cut(s) 207, 231, 865
Sfr274I CTCGAG 1 cut(s) 927
SinI GGWCC 1 cut(s) 556
SlaI CTCGAG 1 cut(s) 927
SmiMI CAYNNNNRTG 3 cut(s) 201, 369, 944
SmlI CTYRAG 2 cut(s) 455, 927
SmoI CTYRAG 2 cut(s) 455, 927
SphI GCATGC 1 cut(s) 728
Sse9I AATT 7 cut(s) 63, 114, 539, 626, 658, 714, 1225
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 1 cut(s) 786
SspI AATATT 1 cut(s) 1281
SspMI CTAG 2 cut(s) 618, 848
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 258, 1252
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 3 cut(s) 227, 302, 592
TaiI ACGT 1 cut(s) 1125
TaqI TCGA 3 cut(s) 571, 656, 928
TasI AATT 7 cut(s) 63, 114, 539, 626, 658, 714, 1225
TatI WGTACW 1 cut(s) 1189
TauI GCSGC 1 cut(s) 789
TfiI GAWTC 3 cut(s) 383, 494, 710
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 4 cut(s) 112, 277, 404, 740
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 3 cut(s) 333, 860, 1219
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 6 cut(s) 47, 79, 486, 532, 855, 1112
TspRI CASTG 4 cut(s) 112, 277, 404, 740
Van91I CCANNNNNTGG 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 3 cut(s) 539, 626, 658
XceI RCATGY 1 cut(s) 728
XhoI CTCGAG 1 cut(s) 927
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 2 cut(s) 1034, 1048
XspI CTAG 2 cut(s) 618, 848
ZrmI AGTACT 1 cut(s) 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.